Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

10253581 .. 10254153

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGTTTACTAGATCCGGTGACTAGTTCGCCTCTCAGGTATTCTCCCAATACTTCTTTAAAGGAATTAAACTTATTGGAGTATCGGATTGTAGAGCTACACAAGTCGTATGGACTTAAATTTGGCGAGAACAATGTTACTATTAATTCTGTGCACAAATTGGTAGTCCTCCCTCGTAACAATTTGGATTTTGGTGATGTGTGTGCTGTTTTTATGATTTATAATGAAGGCAAGCTGGGTTTTATGAGATTTGGAGATGATGAGTTGACCCATGTGGATGAGGAAAACTCCTACTCTGATGATATTATTGTGTACAAGGGTCAATCCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCTCTATTGTCGTGTGGATTTGGTGGGCAGAAGCATTTGGTTGAGTCTTGTGGTGATCTTTATGGGGTCGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGATGAGTACATTTTCGGGAAGTATCACAATTCGCGCTATGATTCTGATGCAATCGATTTTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

190

Amino Acids

21.73

Weight (kDa)

5.09

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	1 - 164	5.2e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccII	CGCG	1 cut(s)	538
AclWI	GGATC	2 cut(s)	8, 376
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	3 cut(s)	314, 470, 512
AhlI	ACTAGT	1 cut(s)	23
AluBI	AGCT	3 cut(s)	97, 235, 371
AluI	AGCT	3 cut(s)	97, 235, 371
Alw21I	GWGCWC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	8, 376
ApaLI	GTGCAC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	540
AsuHPI	GGTGA	5 cut(s)	31, 206, 391, 458, 493
BaeGI	GKGCMC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BceAI	ACGGC	1 cut(s)	511
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	11, 24
BmcAI	AGTACT	1 cut(s)	470
BmsI	GCATC	1 cut(s)	541
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	558
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bse1I	ACTGG	1 cut(s)	385
BseCI	ATCGAT	1 cut(s)	558
BseGI	GGATG	2 cut(s)	283, 511
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	4 cut(s)	13, 381, 448, 463
BspCNI	CTCAG	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	538
BspPI	GGATC	2 cut(s)	8, 376
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	13, 381, 448, 463
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	283, 511
BstFNI	CGCG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	16, 384, 451, 466
BstMBI	GATC	4 cut(s)	13, 381, 448, 463
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	283, 511
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	540
ClaI	ATCGAT	1 cut(s)	558
Csp6I	GTAC	3 cut(s)	313, 469, 511
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	3 cut(s)	97, 235, 371
CviKI_1	RGCY	3 cut(s)	97, 235, 371
CviQI	GTAC	3 cut(s)	313, 469, 511
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	4 cut(s)	15, 383, 450, 465
DpnII	GATC	4 cut(s)	13, 381, 448, 463
DraI	TTTAAA	2 cut(s)	60, 565
FaeI	CATG	1 cut(s)	275
FaiI	YATR	9 cut(s)	111, 215, 222, 245, 273, 330, 456, 474, 543
FatI	CATG	1 cut(s)	271
FokI	GGATG	2 cut(s)	290, 518
FspBI	CTAG	2 cut(s)	11, 24
GlaI	GCGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	395
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	437, 545
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	5 cut(s)	31, 206, 391, 458, 493
Hpy166II	GTNNAC	4 cut(s)	8, 154, 267, 313
Hpy188I	TCNGA	3 cut(s)	87, 298, 550
Hpy188III	TCNNGA	2 cut(s)	374, 520
Hpy8I	GTNNAC	4 cut(s)	8, 154, 267, 313
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	154, 554
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	13, 381, 448, 463
LpnPI	CCDG	6 cut(s)	22, 30, 221, 359, 398, 484
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	11, 24
MaeIII	GTNAC	4 cut(s)	19, 136, 176, 491
MalI	GATC	4 cut(s)	15, 383, 450, 465
MboI	GATC	4 cut(s)	13, 381, 448, 463
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	7 cut(s)	65, 119, 145, 158, 181, 364, 532
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	9 cut(s)	42, 179, 183, 274, 367, 370, 405, 471, 496
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	5 cut(s)	59, 68, 117, 144, 564
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	538
NdeII	GATC	4 cut(s)	13, 381, 448, 463
NlaIII	CATG	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	19, 491
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PshBI	ATTAAT	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	3 cut(s)	314, 470, 512
RsaNI	GTAC	3 cut(s)	313, 469, 511
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	5 cut(s)	59, 68, 117, 144, 564
Sau3AI	GATC	4 cut(s)	13, 381, 448, 463
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	5 cut(s)	41, 99, 237, 373, 381
SfaNI	GCATC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	7 cut(s)	65, 119, 145, 158, 181, 364, 532
SspMI	CTAG	2 cut(s)	11, 24
TaqI	TCGA	2 cut(s)	462, 558
TasI	AATT	7 cut(s)	65, 119, 145, 158, 181, 364, 532
TatI	WGTACW	3 cut(s)	312, 468, 510
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	5 cut(s)	59, 68, 117, 144, 564
Tru9I	TTAA	5 cut(s)	59, 68, 117, 144, 564
TseFI	GTSAC	2 cut(s)	19, 491
Tsp45I	GTSAC	2 cut(s)	19, 491
TspDTI	ATGAA	1 cut(s)	240
VneI	GTGCAC	1 cut(s)	152
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	11, 24
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.