Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

43311341 .. 43313576

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCGTCATGGAAGACACCAAAGATATCAGTCTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATCGAGCATTTTTCTTGGCTATCGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAGAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGAGATCTTCCCTAGGCGATTCCCAAATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCTGGGTCTTCTGCTAACAACACTGTCAGTGGTGCTCCCATTGCTGGTGCTCCGTCTCGGTCAACCTATGTCCCCCCGCATCTTCGTCACCTTCCACAATCATCGGACCCACCTGCTCCGGCGTATAATGCGCTTGCTGGGAATGATCGAGGTGGGTATGGAGGGAGTGGCGGCGGTGGTGGGTTTTCGGGTAATTTTGGGTTTCGGAGAAAGAATTGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

220

Amino Acids

24.11

Weight (kDa)

6.52

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	33 - 99	2.6e-18	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	3 cut(s)	515, 609, 612
AcoI	YGGCCR	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	250, 482
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	154, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	2 cut(s)	189, 424
AluI	AGCT	2 cut(s)	189, 424
Alw21I	GWGCWC	3 cut(s)	426, 475, 490
Alw26I	GTCTC	1 cut(s)	498
AoxI	GGCC	2 cut(s)	240, 407
AspA2I	CCTAGG	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	3 cut(s)	241, 355, 544
AsuHPI	GGTGA	3 cut(s)	119, 206, 518
AvaII	GGWCC	2 cut(s)	355, 544
AvrII	CCTAGG	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	91, 438
Bbv12I	GWGCWC	3 cut(s)	426, 475, 490
BccI	CCATC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	324, 386
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	1 cut(s)	610
BlnI	CCTAGG	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	611
Bme18I	GGWCC	2 cut(s)	355, 544
BmgT120I	GGNCC	3 cut(s)	241, 355, 544
BmiI	GGNNCC	2 cut(s)	430, 546
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	2 cut(s)	91, 438
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpuEI	CTTGAG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 482
Bse3DI	GCAATG	1 cut(s)	477
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	250, 482
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	297
BseYI	CCCAGC	2 cut(s)	254, 575
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	242, 409
BshVI	ATCGAT	1 cut(s)	219
BsiHKAI	GWGCWC	3 cut(s)	426, 475, 490
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	250, 482
BsmAI	GTCTC	1 cut(s)	498
BsmBI	CGTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	242, 409
Bsp1286I	GDGCHC	3 cut(s)	426, 475, 490
Bsp143I	GATC	4 cut(s)	10, 196, 377, 583
BspACI	CCGC	3 cut(s)	515, 609, 612
BspANI	GGCC	2 cut(s)	242, 409
BspCNI	CTCAG	1 cut(s)	296
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	430, 546
BspMI	ACCTGC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	4 cut(s)	10, 196, 377, 583
BssNI	GRCGYC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	150, 463
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	283, 311, 349
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	4 cut(s)	13, 199, 380, 586
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	4 cut(s)	10, 196, 377, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 566
BstNSI	RCATGY	1 cut(s)	438
BstV2I	GAAGAC	2 cut(s)	91, 438
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	242, 409
BsuTUI	ATCGAT	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	459, 472
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	3 cut(s)	241, 355, 544
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	65
CviAII	CATG	3 cut(s)	80, 340, 435
CviJI	RGCY	8 cut(s)	38, 189, 215, 242, 254, 409, 424, 429
CviKI_1	RGCY	8 cut(s)	38, 189, 215, 242, 254, 409, 424, 429
DdeI	CTNAG	3 cut(s)	283, 311, 349
DpnI	GATC	4 cut(s)	12, 198, 379, 585
DpnII	GATC	4 cut(s)	10, 196, 377, 583
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	98
Eco47I	GGWCC	2 cut(s)	355, 544
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	3 cut(s)	83, 343, 438
FaiI	YATR	7 cut(s)	81, 341, 360, 436, 507, 564, 597
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	3 cut(s)	79, 339, 434
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	610
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	2 cut(s)	324, 386
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	1 cut(s)	610
GsaI	CCCAGC	2 cut(s)	258, 579
HaeIII	GGCC	2 cut(s)	242, 409
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	83, 343, 438
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	3 cut(s)	119, 206, 518
Hpy166II	GTNNAC	2 cut(s)	110, 501
Hpy188I	TCNGA	4 cut(s)	286, 369, 544, 645
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	2 cut(s)	110, 501
HpyAV	CCTTC	2 cut(s)	26, 539
HpyCH4III	ACNGT	2 cut(s)	150, 463
HpyCH4V	TGCA	3 cut(s)	138, 261, 273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 566
HpyF3I	CTNAG	3 cut(s)	283, 311, 349
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	83, 343, 438
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 196, 377, 583
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	4 cut(s)	434, 478, 493, 559
LpnPI	CCDG	9 cut(s)	24, 90, 240, 342, 426, 468, 561, 564, 570
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	324, 386
MaeIII	GTNAC	2 cut(s)	319, 524
MalI	GATC	4 cut(s)	12, 198, 379, 585
MboI	GATC	4 cut(s)	10, 196, 377, 583
MboII	GAAGA	5 cut(s)	96, 196, 372, 438, 512
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	3 cut(s)	426, 475, 490
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	5 cut(s)	248, 268, 417, 631, 652
MluNI	TGGCCA	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	257, 346, 423, 581, 593
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	2 cut(s)	129, 300
Msp20I	TGGCCA	1 cut(s)	409
MspI	CCGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	479, 566
NdeII	GATC	4 cut(s)	10, 196, 377, 583
NlaIII	CATG	3 cut(s)	83, 343, 438
NlaIV	GGNNCC	2 cut(s)	430, 546
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	559
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	179
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	611
PscI	ACATGT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	426
PspFI	CCCAGC	2 cut(s)	254, 575
PspN4I	GGNNCC	2 cut(s)	430, 546
PspPI	GGNCC	3 cut(s)	241, 355, 544
PsuI	RGATCY	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	129, 300
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	4 cut(s)	10, 196, 377, 583
Sau96I	GGNCC	3 cut(s)	241, 355, 544
SduI	GDGCHC	3 cut(s)	426, 475, 490
SetI	ASST	9 cut(s)	120, 135, 191, 415, 426, 506, 531, 553, 592
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	2 cut(s)	355, 544
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	248, 268, 417, 631, 652
SsiI	CCGC	3 cut(s)	515, 609, 612
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	2 cut(s)	324, 386
SstI	GAGCTC	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	150, 463
TaqI	TCGA	3 cut(s)	199, 219, 586
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	5 cut(s)	248, 268, 417, 631, 652
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	2 cut(s)	129, 300
Tru9I	TTAA	2 cut(s)	129, 300
TscAI	CASTG	2 cut(s)	466, 472
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	303, 328
TspGWI	ACGGA	2 cut(s)	59, 480
TspRI	CASTG	2 cut(s)	466, 472
Van91I	CCANNNNNTGG	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	355, 544
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	385
XspI	CTAG	2 cut(s)	324, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.