RLG00000016754

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
9754966 .. 9756822
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016754

Sequence Viewer

Length: 1164 bp
ATGGACACCGTGAAATGGTCCGATCTTCCCAAGGAGATCTGGCCGATCATCGGAAAATTCCTCCACAGCCGCATCGACGTACTCCGCTTCCGCAGCGTCTGCTCCTTATGGCGTTCTTCTCGCCCTCCTTTCCAGCGACCTCTTCCTCCTCCTCCTCTCCCCCTCACGTTCTCTCCCTCCGGCGCCGGCAATCCCAAACACCAAGCTCTACTCTTCCAAAGTACGACCTACCGCATGGAGTCAATCATCGACAAAAAACGCAGCGGTTCTTCACGATCAAAGCCGTGGTTGATGAAGCTTGAGCAGGACCCCAACTCCGGTAAAATGCGGTTAGTACATCCGGTGACCAGTTCGCCGCTCAGGTACTTCCCTAACGCTACTTCAAAGGAGTTCAGTTTACTGGAGTTTCGGGTTGTTGAGTTGCGAAAATCGTATGCTCTTAAATTTGGGAGGAACAATGTTACTGTCAAGTCTGTGCAGAGATTGGCAGTCATGCCTTGTGACTTTTTGAACATTGATGATGTGTACGGGGTTTTAATGGTTTATAACGAAGGGAAGCTGGGTTTTGTGAGATTTGGAGATGAGAAGTTGACTCGTGTGGATGAACAGAATGCTTACTATGATGATATCATTGTGTATAAGGGTCAATGCTATGTTGTTGATAAGTGGGGAACAATTTCATGGGTTAGTTCAGCTTTGCAGGTGATTCAGTTTTCGCCTCCGCTATGTGGGTTTGGCGGGCGGAAGTATTTGGTGGAATGTTGTGATGATCTTTATGTGGTTGATCAGTTCTTTGAAAAGGTGACTCAGCAGAGCAATAGAGTAGGGGCCCCATTTCTGGATAATGAGTTACTTTGGTGGCATTATCATAAAATGCGTTCTGATGCAGAAGCAATTGATTTCAAAGTTTATAAGCTGGATCAAGAATGGGGTAAATGGGTCGATGTGAAAGACTTGGGAGATGACATCTTTATTTTAAGCAATGATGGATCTTTCTGTGTCTCCGCCAGAGAGTTTGCTGGAGTGAAGGGAAATTGCATTTTCTTTACTGAAAGTGCGTTAACTACTGGAAGATGTTCCACCCACCTTCAACTTGGCTCACCCCTGATTGAAGTTTGTCTGCATGTTCAGAATGGAAGTTGGTTACTGCTTACGACCATTTGA

Protein Analysis

388

Amino Acids

44.33

Weight (kDa)

8.57

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 86 - 351 6.6e-36 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 546, 912
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 691
AccB1I GGYRCC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 358
AclWI GGATC 2 cut(s) 927, 997
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 2 cut(s) 56, 443
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 5 cut(s) 81, 223, 336, 365, 527
AfiI CCNNNNNNNGG 5 cut(s) 15, 50, 317, 728, 838
AgsI TTSAA 6 cut(s) 384, 511, 797, 904, 1091, 1112
AluBI AGCT 5 cut(s) 206, 298, 559, 695, 916
AluI AGCT 5 cut(s) 206, 298, 559, 695, 916
Alw26I GTCTC 1 cut(s) 1006
AlwI GGATC 2 cut(s) 927, 997
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 2 cut(s) 41, 828
ApaI GGGCCC 1 cut(s) 832
ApeKI GCWGC 2 cut(s) 93, 261
ApoI RAATTY 2 cut(s) 56, 443
Asp700I GAANNNNTTC 2 cut(s) 676, 1075
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 4 cut(s) 18, 307, 828, 829
AsuHPI GGTGA 4 cut(s) 355, 715, 814, 1092
AvaII GGWCC 2 cut(s) 18, 307
BaeGI GKGCMC 1 cut(s) 832
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 832
BauI CACGAG 1 cut(s) 594
BbvI GCAGC 2 cut(s) 105, 273
BccI CCATC 1 cut(s) 980
BceAI ACGGC 1 cut(s) 268
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 1006
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 691
BglII AGATCT 1 cut(s) 36
BisI GCNGC 4 cut(s) 70, 94, 262, 356
BlsI GCNGC 4 cut(s) 71, 95, 263, 357
Bme18I GGWCC 2 cut(s) 18, 307
BmgT120I GGNCC 4 cut(s) 18, 307, 828, 829
BmiI GGNNCC 5 cut(s) 184, 309, 829, 830, 831
BmsI GCATC 2 cut(s) 81, 874
BpmI CTGGAG 2 cut(s) 422, 1041
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 30, 284
BsaWI WCCGGW 2 cut(s) 317, 340
BsaXI ACNNNNNCTCC 4 cut(s) 157, 187, 299, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 50, 317, 728, 838
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 348, 405, 1072
Bse3DI GCAATG 1 cut(s) 988
BseDI CCNNGG 2 cut(s) 30, 284
BseGI GGATG 2 cut(s) 337, 607
BseLI CCNNNNNNNGG 5 cut(s) 15, 50, 317, 728, 838
BseMI GCAATG 1 cut(s) 988
BseMII CTCAG 2 cut(s) 373, 821
BseNI ACTGG 3 cut(s) 348, 405, 1072
BseRI GAGGAG 3 cut(s) 138, 141, 144
BseSI GKGCMC 1 cut(s) 832
BseXI GCAGC 2 cut(s) 105, 273
BseYI CCCAGC 1 cut(s) 559
BsgI GTGCAG 1 cut(s) 497
BshFI GGCC 2 cut(s) 43, 830
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 4 cut(s) 180, 186, 318, 341
BslI CCNNNNNNNGG 5 cut(s) 15, 50, 317, 728, 838
BsmAI GTCTC 1 cut(s) 1006
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 2 cut(s) 43, 830
Bsp120I GGGCCC 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 832
Bsp143I GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
BspANI GGCC 2 cut(s) 43, 830
BspCNI CTCAG 2 cut(s) 372, 820
BspLI GGNNCC 5 cut(s) 184, 309, 829, 830, 831
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 2 cut(s) 927, 997
BspT107I GGYRCC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 988
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 3 cut(s) 348, 405, 1072
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 30, 284
BssMI GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 10, 466
Bst6I CTCTTC 2 cut(s) 147, 218
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 187, 740
BstDEI CTNAG 2 cut(s) 359, 807
BstDSI CCRYGG 1 cut(s) 284
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 2 cut(s) 337, 607
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 8 cut(s) 25, 39, 48, 278, 772, 787, 922, 992
BstMAI GTCTC 1 cut(s) 1006
BstMBI GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
BstMWI GCNNNNNNNGC 2 cut(s) 93, 99
BstNSI RCATGY 1 cut(s) 1127
BstPI GGTNACC 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 832
BstV1I GCAGC 2 cut(s) 105, 273
BstX2I RGATCY 2 cut(s) 36, 989
BstYI RGATCY 2 cut(s) 36, 989
BsuRI GGCC 2 cut(s) 43, 830
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 337, 607
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 2 cut(s) 187, 740
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 4 cut(s) 18, 307, 828, 829
CseI GACGC 1 cut(s) 85
Csp6I GTAC 5 cut(s) 80, 222, 335, 364, 526
CviAII CATG 4 cut(s) 235, 493, 681, 1124
CviQI GTAC 5 cut(s) 80, 222, 335, 364, 526
DdeI CTNAG 2 cut(s) 359, 807
DinI GGCGCC 1 cut(s) 184
DpnI GATC 8 cut(s) 24, 38, 47, 277, 771, 786, 921, 991
DpnII GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 147, 218
EarI CTCTTC 2 cut(s) 147, 218
EciI GGCGGA 2 cut(s) 757, 994
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 832
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 18, 307
Eco91I GGTNACC 1 cut(s) 343
EcoO109I RGGNCCY 3 cut(s) 307, 828, 829
EcoO65I GGTNACC 1 cut(s) 343
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 832
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 238, 496, 684, 1127
FatI CATG 4 cut(s) 234, 492, 680, 1123
FauI CCCGC 1 cut(s) 731
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 4 cut(s) 70, 94, 262, 356
FokI GGATG 2 cut(s) 324, 614
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 4 cut(s) 70, 94, 262, 356
GlaI GCGC 1 cut(s) 184
GluI GCNGC 4 cut(s) 70, 94, 262, 356
GsaI CCCAGC 1 cut(s) 563
GsuI CTGGAG 2 cut(s) 422, 1041
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 43, 830
HapII CCGG 4 cut(s) 180, 186, 318, 341
HgaI GACGC 1 cut(s) 85
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 238, 496, 684, 1127
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 2 cut(s) 591, 1062
HindII GTYRAC 2 cut(s) 591, 1062
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 4 cut(s) 239, 592, 706, 805
HpaI GTTAAC 1 cut(s) 1062
HpaII CCGG 4 cut(s) 180, 186, 318, 341
HphI GGTGA 4 cut(s) 355, 715, 814, 1092
Hpy166II GTNNAC 4 cut(s) 398, 526, 591, 1062
Hpy188I TCNGA 4 cut(s) 22, 53, 883, 1131
Hpy188III TCNNGA 3 cut(s) 273, 839, 923
Hpy8I GTNNAC 4 cut(s) 398, 526, 591, 1062
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 545, 1021, 1097
HpyCH4III ACNGT 2 cut(s) 10, 466
HpyCH4IV ACGT 2 cut(s) 78, 167
HpyCH4V TGCA 5 cut(s) 478, 700, 887, 1038, 1123
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 99
HpyF3I CTNAG 2 cut(s) 359, 807
HpySE526I ACGT 2 cut(s) 78, 167
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 238, 496, 684, 1127
HspAI GCGC 1 cut(s) 183
KasI GGCGCC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 784
KspAI GTTAAC 1 cut(s) 1062
Kzo9I GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 105, 273
LweI GCATC 2 cut(s) 81, 874
MaeII ACGT 2 cut(s) 78, 167
MaeIII GTNAC 6 cut(s) 343, 460, 500, 802, 849, 1143
MalI GATC 8 cut(s) 24, 38, 47, 277, 771, 786, 921, 991
MbiI CCGCTC 1 cut(s) 358
MboI GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
MboII GAAGA 6 cut(s) 17, 108, 134, 205, 261, 1083
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 2 cut(s) 36, 989
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 5 cut(s) 56, 443, 675, 894, 1033
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 3 cut(s) 248, 586, 799
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 2 cut(s) 676, 1075
MseI TTAA 4 cut(s) 441, 536, 977, 1061
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 4 cut(s) 180, 186, 318, 341
MunI CAATTG 1 cut(s) 894
Mva1269I GAATGC 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 93, 99
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 183
NdeII GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 238, 496, 684, 1127
NlaIV GGNNCC 5 cut(s) 184, 309, 829, 830, 831
NmuCI GTSAC 3 cut(s) 343, 500, 802
NspI RCATGY 1 cut(s) 1127
PaqCI CACCTGC 1 cut(s) 691
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 676, 1075
PfeI GAWTC 1 cut(s) 706
PkrI GCNGC 4 cut(s) 71, 95, 263, 357
PleI GAGTC 3 cut(s) 247, 586, 799
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 3 cut(s) 247, 586, 799
PpuMI RGGWCCY 1 cut(s) 307
PsiI TTATAA 2 cut(s) 546, 912
Psp5II RGGWCCY 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 559
PspN4I GGNNCC 5 cut(s) 184, 309, 829, 830, 831
PspOMI GGGCCC 1 cut(s) 828
PspPI GGNCC 4 cut(s) 18, 307, 828, 829
PspPPI RGGWCCY 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 99
PsuI RGATCY 2 cut(s) 36, 989
RsaI GTAC 5 cut(s) 81, 223, 336, 365, 527
RsaNI GTAC 5 cut(s) 80, 222, 335, 364, 526
SaqAI TTAA 4 cut(s) 441, 536, 977, 1061
SatI GCNGC 4 cut(s) 70, 94, 262, 356
Sau3AI GATC 8 cut(s) 22, 36, 45, 275, 769, 784, 919, 989
Sau96I GGNCC 4 cut(s) 18, 307, 828, 829
SchI GAGTC 3 cut(s) 248, 586, 799
SduI GDGCHC 1 cut(s) 832
SfaNI GCATC 2 cut(s) 81, 874
SfoI GGCGCC 1 cut(s) 184
SinI GGWCC 2 cut(s) 18, 307
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 56, 443, 675, 894, 1033
SspDI GGCGCC 1 cut(s) 182
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 10, 466
TaiI ACGT 2 cut(s) 81, 170
TaqI TCGA 3 cut(s) 75, 249, 942
TasI AATT 5 cut(s) 56, 443, 675, 894, 1033
TatI WGTACW 1 cut(s) 334
TauI GCSGC 2 cut(s) 72, 358
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 4 cut(s) 441, 536, 977, 1061
Tru9I TTAA 4 cut(s) 441, 536, 977, 1061
TseFI GTSAC 3 cut(s) 343, 500, 802
TseI GCWGC 2 cut(s) 93, 261
Tsp45I GTSAC 3 cut(s) 343, 500, 802
TspDTI ATGAA 3 cut(s) 308, 618, 669
VpaK11BI GGWCC 2 cut(s) 18, 307
XapI RAATTY 2 cut(s) 56, 443
XceI RCATGY 1 cut(s) 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XmnI GAANNNNTTC 2 cut(s) 676, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.