Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

6570240 .. 6570915

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTGTGGTTCTTTTCATGACACATAGTGAAGGAAGGTTGGGTTTTGTGAGATTTGGGGATGAGAAAGGGACCCATGTGGATGAACAAAACTGTTACTACGATGATATCATTGTTTATAAGGGTCAATCCTATGTTGTTGATAGATGGGGAACAATTTCAAGGTTAAATTCTGAGTTGAAGGTGATTCAACTTTCGCCTCCATTATGTGGGTTTGGTGGGCTGAAGCATTTGGTTGAGTCTTGTGGTGACCTTTACGTGGTTGATCGGTACCTCGAGAAGGAAAGGTTGGATATGGCTCCTCCTAATCCTTTCTGTGTTCCTTGTGGTGCTGAGGCAATGGATTTTAAAGTTTTTAAGTTGGATCAAGAATCGGGTATATTGATCGATGTGAAAAACTTGGGAGATCAAGTGTTTACCTTGAGCAACGAATGGTGTTTCTCCATCGCCGCAGGAGGCCTTGCTGGAGTGGAGGGGAATTGCATTTTATTCAACGACCGTAGGCCTGCTCATAGTCGTGTGTTCAACTTAGAGGATGACGGCATTAAGAACCTAGAAGCTTTCCCTGGCTGTTCTCGGATTCTCTCACCGCCCTCAACTTGGCTCAGCTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

206

Amino Acids

22.88

Weight (kDa)

4.87

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	2 cut(s)	450, 590
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	4 cut(s)	209, 259, 280, 600
AgsI	TTSAA	5 cut(s)	162, 181, 191, 493, 526
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	2 cut(s)	560, 609
AluI	AGCT	2 cut(s)	560, 609
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	457, 503
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	157
Asp718I	GGTACC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	196, 260, 579
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	333
BccI	CCATC	2 cut(s)	141, 452
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	567
BfaI	CTAG	1 cut(s)	554
BisI	GCNGC	1 cut(s)	450
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	4 cut(s)	73, 74, 272, 300
BmrFI	CCNGG	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 259, 280, 600
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	67, 88, 541
BseLI	CCNNNNNNNGG	4 cut(s)	209, 259, 280, 600
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	165, 324
BseRI	GAGGAG	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	459, 505
BshNI	GGYRCC	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	4 cut(s)	209, 259, 280, 600
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	459, 505
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	265, 364, 384, 406
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	2 cut(s)	450, 590
BspANI	GGCC	2 cut(s)	459, 505
BspCNI	CTCAG	3 cut(s)	166, 325, 618
BspDI	ATCGAT	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	4 cut(s)	73, 74, 272, 300
BspPI	GGATC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	4 cut(s)	265, 364, 384, 406
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	2 cut(s)	95, 500
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	174, 333, 529, 605
BstEII	GGTNACC	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	67, 88, 541
BstKTI	GATC	4 cut(s)	268, 367, 387, 409
BstMBI	GATC	4 cut(s)	265, 364, 384, 406
BstMCI	CGRYCG	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	567
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	565
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	459, 505
BsuTUI	ATCGAT	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	67, 88, 541
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	19, 77
CviJI	RGCY	8 cut(s)	223, 299, 459, 505, 560, 570, 604, 609
CviKI_1	RGCY	8 cut(s)	223, 299, 459, 505, 560, 570, 604, 609
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	174, 333, 529, 605
DpnI	GATC	4 cut(s)	267, 366, 386, 408
DpnII	GATC	4 cut(s)	265, 364, 384, 406
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	29
Eco147I	AGGCCT	2 cut(s)	459, 505
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	72
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	109
FaeI	CATG	2 cut(s)	22, 80
FaiI	YATR	9 cut(s)	20, 27, 78, 120, 135, 208, 296, 380, 513
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	18, 76
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	3 cut(s)	74, 95, 548
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	459, 505
Hin1II	CATG	2 cut(s)	22, 80
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	4 cut(s)	187, 239, 371, 580
HphI	GGTGA	3 cut(s)	196, 260, 579
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	3 cut(s)	175, 579, 613
Hpy188III	TCNNGA	3 cut(s)	19, 277, 368
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	4 cut(s)	26, 30, 175, 274
HpyCH4III	ACNGT	2 cut(s)	95, 500
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	483
HpyF3I	CTNAG	4 cut(s)	174, 333, 529, 605
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	22, 80
KflI	GGGWCCC	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	265, 364, 384, 406
LmnI	GCTCC	2 cut(s)	304, 614
LpnPI	CCDG	5 cut(s)	438, 450, 519, 552, 579
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	95, 248
MalI	GATC	4 cut(s)	267, 366, 386, 408
MboI	GATC	4 cut(s)	265, 364, 384, 406
MluCI	AATT	3 cut(s)	156, 169, 478
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	270, 342
MnlI	CCTC	8 cut(s)	210, 284, 312, 328, 449, 466, 526, 604
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	4 cut(s)	167, 348, 357, 546
MslI	CAYNNNNRTG	2 cut(s)	81, 516
MspR9I	CCNGG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	567
NdeII	GATC	4 cut(s)	265, 364, 384, 406
NlaIII	CATG	2 cut(s)	22, 80
NlaIV	GGNNCC	4 cut(s)	73, 74, 272, 300
NmuCI	GTSAC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	275
PagI	TCATGA	1 cut(s)	18
PceI	AGGCCT	2 cut(s)	459, 505
PdmI	GAANNNNTTC	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	187, 371, 580
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	565
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	4 cut(s)	73, 74, 272, 300
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	81, 516
SaqAI	TTAA	4 cut(s)	167, 348, 357, 546
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	4 cut(s)	265, 364, 384, 406
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	81, 516
SmlI	CTYRAG	2 cut(s)	275, 421
SmoI	CTYRAG	2 cut(s)	275, 421
Sse9I	AATT	3 cut(s)	156, 169, 478
SseBI	AGGCCT	2 cut(s)	459, 505
SsiI	CCGC	2 cut(s)	450, 590
SspMI	CTAG	1 cut(s)	554
StuI	AGGCCT	2 cut(s)	459, 505
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	95, 500
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	276, 387
TasI	AATT	3 cut(s)	156, 169, 478
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	187, 371, 580
Tru1I	TTAA	4 cut(s)	167, 348, 357, 546
Tru9I	TTAA	4 cut(s)	167, 348, 357, 546
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	7, 99
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	157
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.