FvH4_1g10860

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000246
Physical Location & Seq
Reverse (-)
5923484 .. 5925558
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10860.t1

Sequence Viewer

Length: 1170 bp
ATGGACATCACCGTCGACTGGTCCAATCTTCCCGTCGTACTCTGGCCACTCATCGGAGAAAAACTCAAACTCCGCATCGAGTTTCTCCGCTTCCGCAGCGTCTGCAATCCATGGCGTTCATATTTACCTCCCTTCCACCCTTCAACTACTCCTCCACCACAGTTCCCTCTCCCTTCCTCCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTCCGACCCCCCGCCACGTCATCACCGCCTTCCTCCGGTGGTTGGCTGGTCAAGGTCGAAGAGTGCGACAGAATGCTTCTAAGGAATCCCATCACCTCCCGGCGCATCAGGTCGGGGTGTTTCAATTTGTTGGAGTTTGATATGGTCGAGTTGGGGAAGTCGTACTTTCTGAGGTACATACGTGGTTCTGGTTCGGCTTGTGGGTTGAAGAAAGTGGTTGTGATGCCTTCTGAGATCGGTGAGTGTGCGATTCTGGTTATATCCGACAAAGGAAACTTGGGTTTTGCTAGAAGTGGAGATCAGAAGCTCAGATGGTTTAGTCATGAAGGTTCTGTTATTGATGATGTTGGTTTTTATAAGGGTCAGTCATATGTGGTGGATAGCTTGGGTTGTGTGTTTAGGATTACTATGTCTTCACATGAGATGGTGAAGATTTCGTCCAAGGTGGTTGGATTAGGTGGGAGGAAGCATTTGGTGGAGAGTTGGGGAGAGCTTTATGTGGTGGATAGGTATTTTGATGAAGAACAAAGTAAGCAAGAAGGGAATGGTCTTGAGTTAGATCTTAGGATCTTTGGTCGTCGTCGTGGGAGATACCGAAGATTTCGGAGTGGTGAACTCAAGGTAGTTGATTTTAAGGTTTACAAGCTGGAATGGGGTGATGGGGAGTTGAGCAGATGGGTTGAAGTGAACAGCTTGGATGATCAAGTGTTCTTCTTGGCTAATGACTGCTCTTTCGCTGTTTCGGCGCAAGAGTTAGCTGGGTACAAAGGGAATTGCATTTACTTTACTGATGAAAATGATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCGGAGAGCTTTGTGTTCGACTTGGAGAACCGTAGCATTCAGAAGCTGGAATCTTCCCAGATATTTTGGCCACCTCCAATTGAGTTTGGCTGCACATCGTCTTCTCTGGATTGA

Protein Analysis

390

Amino Acids

44.19

Weight (kDa)

6.2

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 69 - 343 3.6e-42 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AasI GACNNNNNNGTC 1 cut(s) 11
AccI GTMKAC 2 cut(s) 15, 219
AciI CCGC 5 cut(s) 73, 88, 94, 237, 251
AclWI GGATC 1 cut(s) 800
AcoI YGGCCR 2 cut(s) 44, 1124
AfaI GTAC 4 cut(s) 39, 389, 401, 989
AfiI CCNNNNNNNGG 4 cut(s) 18, 53, 260, 267
AgsI TTSAA 4 cut(s) 144, 349, 433, 908
AjiI CACGTC 1 cut(s) 243
AluBI AGCT 8 cut(s) 532, 609, 718, 871, 918, 983, 1065, 1102
AluI AGCT 8 cut(s) 532, 609, 718, 871, 918, 983, 1065, 1102
AlwI GGATC 1 cut(s) 800
AlwNI CAGNNNCTG 2 cut(s) 102, 1102
AoxI GGCC 2 cut(s) 44, 1124
ApeKI GCWGC 2 cut(s) 96, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AspLEI GCGC 2 cut(s) 330, 973
AspS9I GGNCC 2 cut(s) 21, 188
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 6 cut(s) 240, 310, 476, 664, 848, 893
AvaII GGWCC 2 cut(s) 21, 188
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BalI TGGCCA 2 cut(s) 46, 1126
BbsI GAAGAC 2 cut(s) 630, 1149
BbvI GCAGC 2 cut(s) 108, 1133
BccI CCATC 6 cut(s) 179, 323, 531, 643, 878, 894
BclI TGATCA 1 cut(s) 925
BcnI CCSGG 1 cut(s) 325
BfaI CTAG 2 cut(s) 513, 1053
BglII AGATCT 1 cut(s) 784
BisI GCNGC 2 cut(s) 97, 1147
BlsI GCNGC 2 cut(s) 98, 1148
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 2 cut(s) 21, 188
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 2 cut(s) 21, 188
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 3 cut(s) 84, 339, 438
BpiI GAAGAC 2 cut(s) 630, 1149
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpuEI CTTGAG 2 cut(s) 797, 827
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 1029
BsaJI CCNNGG 2 cut(s) 110, 666
BsaWI WCCGGW 2 cut(s) 260, 1057
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 136, 166
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 53, 260, 267
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 1029
BseDI CCNNGG 2 cut(s) 110, 666
BseGI GGATG 1 cut(s) 928
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 4 cut(s) 18, 53, 260, 267
BseMII CTCAG 3 cut(s) 386, 447, 547
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 3 cut(s) 141, 169, 215
BseXI GCAGC 2 cut(s) 108, 1133
BseYI CCCAGC 1 cut(s) 983
BsgI GTGCAG 1 cut(s) 1132
BshFI GGCC 2 cut(s) 46, 1126
BsiSI CCGG 3 cut(s) 261, 325, 1058
BslI CCNNNNNNNGG 4 cut(s) 18, 53, 260, 267
BsmI GAATGC 2 cut(s) 303, 1092
BsnI GGCC 2 cut(s) 46, 1126
Bsp143I GATC 5 cut(s) 459, 523, 784, 792, 925
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 5 cut(s) 73, 88, 94, 237, 251
BspANI GGCC 2 cut(s) 46, 1126
BspCNI CTCAG 3 cut(s) 387, 448, 546
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 800
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 110, 666
BssMI GATC 5 cut(s) 459, 523, 784, 792, 925
BssT1I CCWWGG 2 cut(s) 110, 666
Bst4CI ACNGT 4 cut(s) 13, 162, 217, 1088
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 6 cut(s) 305, 395, 456, 533, 788, 1040
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 928
BstHHI GCGC 2 cut(s) 330, 973
BstKTI GATC 5 cut(s) 462, 526, 787, 795, 928
BstMBI GATC 5 cut(s) 459, 523, 784, 792, 925
BstMWI GCNNNNNNNGC 3 cut(s) 96, 102, 968
BstSCI CCNGG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 108, 1133
BstV2I GAAGAC 2 cut(s) 630, 1149
BstX2I RGATCY 2 cut(s) 784, 792
BstYI RGATCY 2 cut(s) 784, 792
BsuRI GGCC 2 cut(s) 46, 1126
BtgI CCRYGG 1 cut(s) 110
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 928
CaiI CAGNNNCTG 2 cut(s) 102, 1102
CciI TCATGA 1 cut(s) 547
CfoI GCGC 2 cut(s) 330, 973
Cfr13I GGNCC 2 cut(s) 21, 188
CseI GACGC 1 cut(s) 88
Csp6I GTAC 4 cut(s) 38, 388, 400, 988
CviAII CATG 3 cut(s) 111, 548, 644
CviQI GTAC 4 cut(s) 38, 388, 400, 988
DdeI CTNAG 6 cut(s) 305, 395, 456, 533, 788, 1040
DpnI GATC 5 cut(s) 461, 525, 786, 794, 927
DpnII GATC 5 cut(s) 459, 523, 784, 792, 925
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 44, 1124
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 110, 666
Eco47I GGWCC 2 cut(s) 21, 188
EcoT14I CCWWGG 2 cut(s) 110, 666
ErhI CCWWGG 2 cut(s) 110, 666
FaeI CATG 3 cut(s) 114, 551, 647
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 3 cut(s) 110, 547, 643
FauI CCCGC 1 cut(s) 244
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 2 cut(s) 15, 219
Fnu4HI GCNGC 2 cut(s) 97, 1147
FokI GGATG 1 cut(s) 935
Fsp4HI GCNGC 2 cut(s) 97, 1147
FspBI CTAG 2 cut(s) 513, 1053
GlaI GCGC 2 cut(s) 329, 972
GluI GCNGC 2 cut(s) 97, 1147
GsaI CCCAGC 1 cut(s) 987
HaeIII GGCC 2 cut(s) 46, 1126
HapII CCGG 3 cut(s) 261, 325, 1058
HgaI GACGC 1 cut(s) 88
HhaI GCGC 2 cut(s) 330, 973
Hin1II CATG 3 cut(s) 114, 551, 647
Hin6I GCGC 2 cut(s) 328, 971
HinP1I GCGC 2 cut(s) 328, 971
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 3 cut(s) 310, 475, 1106
HpaII CCGG 3 cut(s) 261, 325, 1058
HphI GGTGA 6 cut(s) 240, 310, 476, 664, 848, 893
Hpy166II GTNNAC 5 cut(s) 16, 220, 839, 865, 913
Hpy188III TCNNGA 3 cut(s) 548, 776, 1163
Hpy8I GTNNAC 5 cut(s) 16, 220, 839, 865, 913
Hpy99I CGWCG 4 cut(s) 17, 38, 807, 810
HpyAV CCTTC 8 cut(s) 142, 150, 183, 208, 264, 462, 545, 758
HpyCH4III ACNGT 4 cut(s) 13, 162, 217, 1088
HpyCH4IV ACGT 2 cut(s) 242, 406
HpyCH4V TGCA 3 cut(s) 105, 1002, 1149
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 102, 968
HpyF3I CTNAG 6 cut(s) 305, 395, 456, 533, 788, 1040
HpySE526I ACGT 2 cut(s) 242, 406
Hsp92II CATG 3 cut(s) 114, 551, 647
HspAI GCGC 2 cut(s) 328, 971
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 5 cut(s) 459, 523, 784, 792, 925
Lsp1109I GCAGC 2 cut(s) 108, 1133
LweI GCATC 3 cut(s) 84, 339, 438
MaeI CTAG 2 cut(s) 513, 1053
MaeII ACGT 2 cut(s) 242, 406
MaeIII GTNAC 1 cut(s) 1048
MalI GATC 5 cut(s) 461, 525, 786, 794, 927
MboI GATC 5 cut(s) 459, 523, 784, 792, 925
MfeI CAATTG 1 cut(s) 1134
MflI RGATCY 2 cut(s) 784, 792
MlsI TGGCCA 2 cut(s) 46, 1126
MluCI AATT 3 cut(s) 349, 997, 1134
MluNI TGGCCA 2 cut(s) 46, 1126
MmeI TCCRAC 4 cut(s) 253, 336, 513, 655
Mox20I TGGCCA 2 cut(s) 46, 1126
MscI TGGCCA 2 cut(s) 46, 1126
MseI TTAA 2 cut(s) 858, 1029
Msp20I TGGCCA 2 cut(s) 46, 1126
MspI CCGG 3 cut(s) 261, 325, 1058
MspR9I CCNGG 1 cut(s) 325
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 2 cut(s) 303, 1092
MwoI GCNNNNNNNGC 3 cut(s) 96, 102, 968
NciI CCSGG 1 cut(s) 325
NcoI CCATGG 1 cut(s) 110
NdeI CATATG 1 cut(s) 595
NdeII GATC 5 cut(s) 459, 523, 784, 792, 925
NlaIII CATG 3 cut(s) 114, 551, 647
NlaIV GGNNCC 1 cut(s) 190
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 2 cut(s) 303, 1092
PfeI GAWTC 3 cut(s) 310, 475, 1106
PkrI GCNGC 2 cut(s) 98, 1148
Ppu21I YACGTR 1 cut(s) 407
PsiI TTATAA 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 983
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 21, 188
PstNI CAGNNNCTG 2 cut(s) 102, 1102
PsuI RGATCY 2 cut(s) 784, 792
RsaI GTAC 4 cut(s) 39, 389, 401, 989
RsaNI GTAC 4 cut(s) 38, 388, 400, 988
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 858, 1029
SatI GCNGC 2 cut(s) 97, 1147
Sau3AI GATC 5 cut(s) 459, 523, 784, 792, 925
Sau96I GGNCC 2 cut(s) 21, 188
ScrFI CCNGG 1 cut(s) 325
SfaNI GCATC 3 cut(s) 84, 339, 438
SinI GGWCC 2 cut(s) 21, 188
SmlI CTYRAG 2 cut(s) 776, 842
SmoI CTYRAG 2 cut(s) 776, 842
Sse9I AATT 3 cut(s) 349, 997, 1134
SsiI CCGC 5 cut(s) 73, 88, 94, 237, 251
SspMI CTAG 2 cut(s) 513, 1053
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 2 cut(s) 110, 666
TaaI ACNGT 4 cut(s) 13, 162, 217, 1088
TaiI ACGT 2 cut(s) 245, 409
TaqI TCGA 5 cut(s) 15, 78, 282, 372, 1074
TasI AATT 3 cut(s) 349, 997, 1134
TfiI GAWTC 3 cut(s) 310, 475, 1106
Tru1I TTAA 2 cut(s) 858, 1029
Tru9I TTAA 2 cut(s) 858, 1029
TseI GCWGC 2 cut(s) 96, 1146
TspDTI ATGAA 4 cut(s) 108, 564, 759, 1032
VpaK11BI GGWCC 2 cut(s) 21, 188
XmiI GTMKAC 2 cut(s) 15, 219
XspI CTAG 2 cut(s) 513, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.