AT1G65770

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000246
Physical Location & Seq
Reverse (-)
24460656 .. 24461738
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G65770.1

Sequence Viewer

Length: 1083 bp
ATGGCTGATTGGTCTACCTTACCAGTGGATCTCCTCAACATGATCGCCGGTCGCTTGTTCTCTAACATTGAACTCAAACGTTTCCGTAGCATCTGCCGTTCATGGCGCTCCTCCGTTCCCGGCGCCGGCAAGAAAAACCCTTTCAGGACCCGTCCTCTAATCCTCCTCAATCCTAACCCAAACAAACCTCTCACCGACCATCGCCGACGCGGCGAGTTTCTCTCACGCTCTGCCTTCTTCCGTGTAACTCTCTCCTCCTCTCCTAGCCAGGGCTGGCTTATCAAATCCGACGTGGACGTCAGCTCCGGGAAACTCCATCTCCTCGACCCGCTCTCTCGCCTTCCGATGGAGCATTCGCGCAAGCGTGTCGATCTTTCAGAGTTCACTATCACCGAGATTCGAGAAGCTTATCAGGTTCATGACTGGCGTACGAGAAAAGAAACAAGGCCTATATTCAAAAGAGTGGCTCTTGTTAAAGACAAGGAAGGAGATAATCAGGTTCTTGGAATTCGCAGTACCGGGAAGATGATGTACTGGGACATAAAAACATGGAAAGCCAAAGAAGAGGGTTATGAATTCTCTGACATTATAGTTCACAAAGGGCAAACATACGCCTTGGATTCAATTGGCATTGTTTACTGGATTCGTTCTGATCTTAAATTCATTAGGTTTGGACCTCTAGTTGGTGACTGGACCGGAGATAGGAGACTTGTGGAATGTTGTGGAGAGTTTTACATTGTGGAAAGACTTGTTGGAGAGAGTACTTGGAAGAGAAAAGCTGACGACACCGGGTATGAGTATGCGAAAACGGTCGGTTTCAAGGTTTATAAGTTTGATGATGAACAAGGAAAAATGATGGAGGTTAAGTCCTTGGGAGATAAGGCATTTGTGATAGCTACCGATACTTGTTTCTCGGTTTTGGCTCATGAGTTTTACGGATGTCTTGAAAACGCTATTTACTTCACCGACGATACCATGATTAAGGTGTTCAAGCTAGATAATGGTAATGGAAGTAGTATCGAGACAACGATATATCCTTATGCTCAGAGTTGTTTCCAAATGTTTGTTCCTAGCTTTCTCTGA

Protein Analysis

360

Amino Acids

41.59

Weight (kDa)

9.03

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 86 - 330 1.5e-30 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AasI GACNNNNNNGTC 1 cut(s) 296
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 14
AccII CGCG 2 cut(s) 210, 358
AciI CCGC 2 cut(s) 210, 329
AclI AACGTT 1 cut(s) 79
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 3 cut(s) 507, 575, 659
AcyI GRCGYC 2 cut(s) 123, 297
AfaI GTAC 4 cut(s) 430, 517, 533, 763
AfiI CCNNNNNNNGG 5 cut(s) 125, 269, 346, 683, 702
AgsI TTSAA 6 cut(s) 71, 457, 624, 820, 947, 991
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 4 cut(s) 735, 767, 1050, 1082
AluBI AGCT 6 cut(s) 303, 407, 779, 896, 994, 1074
AluI AGCT 6 cut(s) 303, 407, 779, 896, 994, 1074
Alw26I GTCTC 2 cut(s) 700, 1016
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 446
ApoI RAATTY 3 cut(s) 507, 575, 659
AspLEI GCGC 3 cut(s) 108, 125, 360
AspS9I GGNCC 3 cut(s) 147, 674, 693
AsuC2I CCSGG 4 cut(s) 120, 307, 520, 790
AsuHPI GGTGA 4 cut(s) 184, 382, 698, 955
AvaII GGWCC 3 cut(s) 147, 674, 693
BanI GGYRCC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BccI CCATC 4 cut(s) 207, 324, 340, 850
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 4 cut(s) 120, 307, 520, 790
BcoDI GTCTC 2 cut(s) 700, 1016
BfaI CTAG 4 cut(s) 264, 680, 995, 1071
BfoI RGCGCY 2 cut(s) 109, 126
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
BmcAI AGTACT 1 cut(s) 763
Bme1390I CCNGG 5 cut(s) 120, 269, 307, 520, 790
Bme18I GGWCC 3 cut(s) 147, 674, 693
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 147, 674, 693
BmiI GGNNCC 2 cut(s) 124, 149
BmrFI CCNGG 5 cut(s) 120, 269, 307, 520, 790
BmrI ACTGGG 1 cut(s) 544
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 544
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpuMI CCSGG 4 cut(s) 120, 307, 520, 790
BsaHI GRCGYC 2 cut(s) 123, 297
BsaJI CCNNGG 3 cut(s) 268, 615, 870
BsaWI WCCGGW 1 cut(s) 695
BsaXI ACNNNNNCTCC 6 cut(s) 287, 303, 317, 333, 851, 881
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 269, 346, 683, 702
Bse118I RCCGGY 2 cut(s) 47, 125
Bse1I ACTGG 5 cut(s) 23, 428, 539, 644, 695
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 268, 615, 870
BseGI GGATG 1 cut(s) 944
BseLI CCNNNNNNNGG 5 cut(s) 125, 269, 346, 683, 702
BseMII CTCAG 1 cut(s) 1058
BseNI ACTGG 5 cut(s) 23, 428, 539, 644, 695
BseRI GAGGAG 6 cut(s) 23, 100, 155, 244, 247, 311
Bsh1236I CGCG 2 cut(s) 210, 358
Bsh1285I CGRYCG 2 cut(s) 52, 813
BshFI GGCC 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 2 cut(s) 52, 813
BsiSI CCGG 7 cut(s) 48, 120, 126, 306, 519, 696, 789
BsiWI CGTACG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 5 cut(s) 125, 269, 346, 683, 702
BsmAI GTCTC 2 cut(s) 700, 1016
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 448
Bsp143I GATC 4 cut(s) 28, 42, 370, 652
BspACI CCGC 2 cut(s) 210, 329
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 1057
BspFNI CGCG 2 cut(s) 210, 358
BspHI TCATGA 2 cut(s) 418, 925
BspLI GGNNCC 2 cut(s) 124, 149
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 2 cut(s) 47, 125
BsrI ACTGG 5 cut(s) 23, 428, 539, 644, 695
BssAI RCCGGY 2 cut(s) 47, 125
BssECI CCNNGG 3 cut(s) 268, 615, 870
BssMI GATC 4 cut(s) 28, 42, 370, 652
BssNI GRCGYC 2 cut(s) 123, 297
BssT1I CCWWGG 2 cut(s) 615, 870
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 811
Bst6I CTCTTC 2 cut(s) 558, 764
BstACI GRCGYC 2 cut(s) 123, 297
BstC8I GCNNGC 3 cut(s) 127, 275, 362
BstDEI CTNAG 1 cut(s) 1044
BstF5I GGATG 1 cut(s) 944
BstFNI CGCG 2 cut(s) 210, 358
BstH2I RGCGCY 2 cut(s) 109, 126
BstHHI GCGC 3 cut(s) 108, 125, 360
BstKTI GATC 4 cut(s) 31, 45, 373, 655
BstMAI GTCTC 2 cut(s) 700, 1016
BstMBI GATC 4 cut(s) 28, 42, 370, 652
BstMCI CGRYCG 2 cut(s) 52, 813
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 5 cut(s) 118, 267, 305, 518, 788
BstUI CGCG 2 cut(s) 210, 358
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 185
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 944
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 127, 275, 362
CciI TCATGA 2 cut(s) 418, 925
CfoI GCGC 3 cut(s) 108, 125, 360
Cfr10I RCCGGY 2 cut(s) 47, 125
Cfr13I GGNCC 3 cut(s) 147, 674, 693
CseI GACGC 1 cut(s) 216
Csp6I GTAC 4 cut(s) 429, 516, 532, 762
CviAII CATG 6 cut(s) 40, 102, 419, 549, 926, 976
CviQI GTAC 4 cut(s) 429, 516, 532, 762
DdeI CTNAG 1 cut(s) 1044
DinI GGCGCC 1 cut(s) 124
DpnI GATC 4 cut(s) 30, 44, 372, 654
DpnII GATC 4 cut(s) 28, 42, 370, 652
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 2 cut(s) 558, 764
EarI CTCTTC 2 cut(s) 558, 764
Eco130I CCWWGG 2 cut(s) 615, 870
Eco147I AGGCCT 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 147, 674, 693
EcoO109I RGGNCCY 1 cut(s) 147
EcoRI GAATTC 2 cut(s) 507, 575
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 615, 870
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 2 cut(s) 615, 870
FaeI CATG 6 cut(s) 43, 105, 422, 552, 929, 979
FaqI GGGAC 1 cut(s) 551
FatI CATG 6 cut(s) 39, 101, 418, 548, 925, 975
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 951
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 4 cut(s) 264, 680, 995, 1071
GlaI GCGC 3 cut(s) 107, 124, 359
GluI GCNGC 1 cut(s) 211
HaeII RGCGCY 2 cut(s) 109, 126
HaeIII GGCC 1 cut(s) 448
HapII CCGG 7 cut(s) 48, 120, 126, 306, 519, 696, 789
HgaI GACGC 1 cut(s) 216
HhaI GCGC 3 cut(s) 108, 125, 360
Hin1I GRCGYC 2 cut(s) 123, 297
Hin1II CATG 6 cut(s) 43, 105, 422, 552, 929, 979
Hin6I GCGC 3 cut(s) 106, 123, 358
HinP1I GCGC 3 cut(s) 106, 123, 358
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 3 cut(s) 397, 620, 643
HpaII CCGG 7 cut(s) 48, 120, 126, 306, 519, 696, 789
HphI GGTGA 4 cut(s) 184, 382, 698, 955
Hpy166II GTNNAC 5 cut(s) 15, 295, 384, 595, 637
Hpy188I TCNGA 7 cut(s) 289, 345, 379, 583, 652, 1047, 1082
Hpy188III TCNNGA 6 cut(s) 145, 401, 419, 926, 944, 1021
Hpy8I GTNNAC 5 cut(s) 15, 295, 384, 595, 637
Hpy99I CGWCG 3 cut(s) 210, 293, 971
HpyAV CCTTC 3 cut(s) 244, 350, 479
HpyCH4III ACNGT 1 cut(s) 811
HpyCH4IV ACGT 3 cut(s) 79, 291, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 1044
HpySE526I ACGT 3 cut(s) 79, 291, 297
Hsp92I GRCGYC 2 cut(s) 123, 297
Hsp92II CATG 6 cut(s) 43, 105, 422, 552, 929, 979
HspAI GCGC 3 cut(s) 106, 123, 358
KasI GGCGCC 1 cut(s) 122
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 4 cut(s) 28, 42, 370, 652
LmnI GCTCC 3 cut(s) 113, 308, 349
LweI GCATC 1 cut(s) 99
MaeI CTAG 4 cut(s) 264, 680, 995, 1071
MaeII ACGT 3 cut(s) 79, 291, 297
MaeIII GTNAC 2 cut(s) 244, 686
MalI GATC 4 cut(s) 30, 44, 372, 654
MbiI CCGCTC 1 cut(s) 331
MboI GATC 4 cut(s) 28, 42, 370, 652
MboII GAAGA 4 cut(s) 229, 535, 575, 781
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 28
MluCI AATT 4 cut(s) 507, 575, 624, 659
Mly113I GGCGCC 1 cut(s) 123
MmeI TCCRAC 2 cut(s) 312, 733
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 4 cut(s) 474, 657, 864, 981
MspI CCGG 7 cut(s) 48, 120, 126, 306, 519, 696, 789
MspR9I CCNGG 5 cut(s) 120, 269, 307, 520, 790
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 2 cut(s) 210, 358
MwoI GCNNNNNNNGC 1 cut(s) 210
NaeI GCCGGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 4 cut(s) 120, 307, 520, 790
NdeII GATC 4 cut(s) 28, 42, 370, 652
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 6 cut(s) 43, 105, 422, 552, 929, 979
NlaIV GGNNCC 2 cut(s) 124, 149
NmuCI GTSAC 1 cut(s) 686
PagI TCATGA 2 cut(s) 418, 925
PceI AGGCCT 1 cut(s) 448
PctI GAATGC 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 397, 620, 643
Pfl23II CGTACG 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 305
PkrI GCNGC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 147
PsiI TTATAA 1 cut(s) 828
Psp1406I AACGTT 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspLI CGTACG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 124, 149
PspPI GGNCC 3 cut(s) 147, 674, 693
PspPPI RGGWCCY 1 cut(s) 147
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 4 cut(s) 430, 517, 533, 763
RsaNI GTAC 4 cut(s) 429, 516, 532, 762
SaqAI TTAA 4 cut(s) 474, 657, 864, 981
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 4 cut(s) 28, 42, 370, 652
Sau96I GGNCC 3 cut(s) 147, 674, 693
ScaI AGTACT 1 cut(s) 763
ScrFI CCNGG 5 cut(s) 120, 269, 307, 520, 790
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 124
SinI GGWCC 3 cut(s) 147, 674, 693
Sse9I AATT 4 cut(s) 507, 575, 624, 659
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 2 cut(s) 210, 329
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 4 cut(s) 264, 680, 995, 1071
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 5 cut(s) 118, 267, 305, 518, 788
StyI CCWWGG 2 cut(s) 615, 870
TaaI ACNGT 1 cut(s) 811
TaiI ACGT 3 cut(s) 82, 294, 300
TaqI TCGA 4 cut(s) 324, 369, 400, 1020
TasI AATT 4 cut(s) 507, 575, 624, 659
TatI WGTACW 2 cut(s) 531, 761
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 3 cut(s) 397, 620, 643
Tru1I TTAA 4 cut(s) 474, 657, 864, 981
Tru9I TTAA 4 cut(s) 474, 657, 864, 981
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 5 cut(s) 90, 407, 588, 652, 855
TspGWI ACGGA 4 cut(s) 74, 103, 230, 951
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 3 cut(s) 147, 674, 693
XapI RAATTY 3 cut(s) 507, 575, 659
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 4 cut(s) 264, 680, 995, 1071
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.