Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

9787181 .. 9787835

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATAGAAAAATTCCTAGAAACCTGTGTCGACGTTCTCCGATTCAGCAGCGTCTGCTCTCTCTGGCGCTCCACCCTCCCTCCTCTAGACCCAATCGACTCTCCTCCTCTCCCCCTCAAATTCCCTCACACAGACGAAGAGCCTCCCGCCGCCGTCTCCCAGACCACCGTCTACCGCCTGCAGTCGCTGATCGCCGGCGAAGGTTCCGATGAGTTGCTGCCGTGGTTGAGGTGCCACATGATAGACTACCCTCATCCTCAGGGTTGCTTTTTTCACAAGACGTCCTTCTCTCTTGATAACATTACCGAGATGTACTTGGATGGGTGGAGAGTTCACATTGAGAGGAGGAATAGAGAACCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

122

Amino Acids

14.01

Weight (kDa)

5.23

Isoelectric Point (pI)

80.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	231
AccI	GTMKAC	2 cut(s)	30, 171
AciI	CCGC	4 cut(s)	147, 150, 175, 359
AcsI	RAATTY	2 cut(s)	11, 119
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	160
AlwNI	CAGNNNCTG	2 cut(s)	54, 187
ApeKI	GCWGC	2 cut(s)	48, 217
ApoI	RAATTY	2 cut(s)	11, 119
AspLEI	GCGC	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	60, 204
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	137, 205
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	17, 86
BfmI	CTRYAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	3 cut(s)	49, 150, 218
BlsI	GCNGC	3 cut(s)	50, 151, 219
BmiI	GGNNCC	2 cut(s)	205, 233
BoxI	GACNNNNGTC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse118I	RCCGGY	1 cut(s)	194
Bse21I	CCTNAGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	253, 325
BseMII	CTCAG	1 cut(s)	272
BseRI	GAGGAG	4 cut(s)	72, 93, 96, 358
BseXI	GCAGC	2 cut(s)	60, 204
BshNI	GGYRCC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	4 cut(s)	147, 150, 175, 359
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	205, 233
BspMAI	CTGCAG	1 cut(s)	183
BspQI	GCTCTTC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	179, 196
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	253, 325
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	60, 204
Bsu36I	CCTNAGG	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	253, 325
Cac8I	GCNNGC	2 cut(s)	179, 196
CaiI	CAGNNNCTG	2 cut(s)	54, 187
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	238, 363
CviJI	RGCY	1 cut(s)	142
CviKI_1	RGCY	1 cut(s)	142
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	2 cut(s)	241, 366
FaiI	YATR	2 cut(s)	239, 364
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	2 cut(s)	237, 362
FauI	CCCGC	1 cut(s)	154
FblI	GTMKAC	2 cut(s)	30, 171
Fnu4HI	GCNGC	3 cut(s)	49, 150, 218
FokI	GGATG	2 cut(s)	240, 332
Fsp4HI	GCNGC	3 cut(s)	49, 150, 218
FspBI	CTAG	2 cut(s)	17, 86
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	3 cut(s)	49, 150, 218
HaeII	RGCGCY	1 cut(s)	70
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	241, 366
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	2 cut(s)	42, 98
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	31, 172, 334
Hpy188I	TCNGA	2 cut(s)	41, 208
Hpy188III	TCNNGA	2 cut(s)	86, 293
Hpy8I	GTNNAC	3 cut(s)	31, 172, 334
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	194, 295
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	33, 281
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	33, 281
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	241, 366
HspAI	GCGC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	6 cut(s)	37, 49, 173, 191, 208, 245
Lsp1109I	GCAGC	2 cut(s)	60, 204
MaeI	CTAG	2 cut(s)	17, 86
MaeII	ACGT	2 cut(s)	33, 281
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	2 cut(s)	11, 119
MlyI	GAGTC	1 cut(s)	92
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MspI	CCGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	189
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	241, 366
NlaIV	GGNNCC	2 cut(s)	205, 233
PciSI	GCTCTTC	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	50, 151, 219
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	205, 233
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	2 cut(s)	54, 187
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	3 cut(s)	49, 150, 218
Sau3AI	GATC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	92
SetI	ASST	5 cut(s)	26, 36, 205, 233, 284
SfcI	CTRYAG	1 cut(s)	179
SgrAI	CRCCGGYG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	11, 119
SsiI	CCGC	4 cut(s)	147, 150, 175, 359
SspMI	CTAG	2 cut(s)	17, 86
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	36, 284
TaqI	TCGA	2 cut(s)	30, 96
TasI	AATT	2 cut(s)	11, 119
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	48, 217
XapI	RAATTY	2 cut(s)	11, 119
XbaI	TCTAGA	1 cut(s)	85
XmiI	GTMKAC	2 cut(s)	30, 171
XspI	CTAG	2 cut(s)	17, 86
ZraI	GACGTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.