Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

16934236 .. 16935502

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35733.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGTGAAGCCACCGTGTGGTCTGATTTACCCGGAGAACTCCTCGATCATATAGCCAACGGTCTCTTCTCCAAAGTCGAGCTTCTCCGATTCCGTAGCATCTGCAAAACCTTCCGTTCTGCGGTTGACTCCGACAAGAATTTTCTCGACCACCTCAAACGCAACCGTAGACGCCTTCTCTCTCCTTACAGTACTGGTAAAACGTGTTCGCTCTCTCCCGCAGCTTTCTATCGAGTGGTTCTGTCGTCATATCCGGACAAAGGATGGCTTATCAAACTCCAAGATGCCTATGTCTCCTCTCAAAAGCAGCTCCTTTCTCCTCTCTCTCGTTTCTCCATCAAATCATCTGGCAAAACCCTAGATCTCTTGGAGTTCACGGTTTCAGAGATTCATCAATCTTACGACGTGGAATACTTATATTATAATTCGACTAGAGCATCGTTTAATTTCGCTAGAGTTGTTCTAGCAGAGGACTTTGTTTTCATAGTTGATAACTACAAGAAAATCTGGTTGTGCAATAGTAACGAAAGTGATAGTCATTGGGTAAGAATCATGGATGAAGAAGTTAAACTTTTCTCGGATATTGTATTTCACAAAGGTTATATGTATGCCTTAGACTTAACAGGAGCAGTTTGGTGGATTAGTTTATCTGAGTTTGGAATATTTCAATTCGGACCTTCAAGTACTCCAATGGACTACTGTGACATTGATGAGTGCAAAGACAAGAGGTTCGTTGAGTATTGCGGAGATCTATGCATTGTTCATCGATTTTCTAGGAAATTTCGCATAAAGCGAGTTGATATAGATATGACAGTTGGTTTCAAGGTTTATAAGATGGACGAGGAATTGGTTGAATATGTTGAGGTTAAGTCTTTGGGAGATAAGGCTTTTGTGATGGCTACAGATAGTTGTTTCTCTGTCTTGGCGAGAGAGTACTATGGATGTTTGGAGAATTCGATCTATTTTACAGAGCAAAACAATGTTAAAGTGTTCAAGCTTGGTGATGGTAGTATCACTAACATGGTTGATTCTTCTTTTCAGAGTTGTTTTCAGATGCTTATTCCTCCTTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006109 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010565 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045912 GO:0046137 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0051276 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

358

Amino Acids

41.4

Weight (kDa)

5.78

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	77 - 331	6e-36	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	423, 831
AccB7I	CCANNNNNTGG	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	3 cut(s)	122, 219, 744
AcsI	RAATTY	3 cut(s)	139, 779, 952
AcyI	GRCGYC	1 cut(s)	172
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	3 cut(s)	193, 685, 935
AfiI	CCNNNNNNNGG	3 cut(s)	18, 121, 260
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	668, 681, 823, 854, 994
AjiI	CACGTC	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	4 cut(s)	82, 224, 310, 997
AluI	AGCT	4 cut(s)	82, 224, 310, 997
Alw26I	GTCTC	2 cut(s)	68, 298
Aor13HI	TCCGGA	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	221, 307
ApoI	RAATTY	3 cut(s)	139, 779, 952
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AspS9I	GGNCC	1 cut(s)	674
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	1013
AvaII	GGWCC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	233, 319
BccI	CCATC	5 cut(s)	258, 344, 829, 889, 998
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	68, 298
BfaI	CTAG	5 cut(s)	359, 432, 453, 464, 774
BfmI	CTRYAG	1 cut(s)	900
BglII	AGATCT	2 cut(s)	361, 748
BisI	GCNGC	2 cut(s)	222, 308
BlsI	GCNGC	2 cut(s)	223, 309
BmcAI	AGTACT	3 cut(s)	193, 685, 935
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	674
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	674
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	4 cut(s)	108, 274, 446, 1044
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 121, 260
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	766
BseGI	GGATG	3 cut(s)	269, 562, 947
BseLI	CCNNNNNNNGG	3 cut(s)	18, 121, 260
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	32, 286, 309
BseXI	GCAGC	2 cut(s)	233, 319
BshVI	ATCGAT	1 cut(s)	766
BsiSI	CCGG	2 cut(s)	33, 254
BslI	CCNNNNNNNGG	3 cut(s)	18, 121, 260
BsmAI	GTCTC	2 cut(s)	68, 298
Bso31I	GGTCTC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	46, 361, 748, 957
BspACI	CCGC	3 cut(s)	122, 219, 744
BspCNI	CTCAG	1 cut(s)	643
BspDI	ATCGAT	1 cut(s)	766
BspEI	TCCGGA	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	46, 361, 748, 957
BssNI	GRCGYC	1 cut(s)	172
Bst4CI	ACNGT	7 cut(s)	16, 62, 167, 191, 379, 701, 814
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	613, 651
BstF5I	GGATG	3 cut(s)	269, 562, 947
BstKTI	GATC	4 cut(s)	49, 364, 751, 960
BstMAI	GTCTC	2 cut(s)	68, 298
BstMBI	GATC	4 cut(s)	46, 361, 748, 957
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	233, 319
BstX2I	RGATCY	2 cut(s)	361, 748
BstYI	RGATCY	2 cut(s)	361, 748
Bsu15I	ATCGAT	1 cut(s)	766
BsuTUI	ATCGAT	1 cut(s)	766
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	269, 562, 947
Cfr13I	GGNCC	1 cut(s)	674
ClaI	ATCGAT	1 cut(s)	766
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	192, 684, 934
CviAII	CATG	2 cut(s)	553, 1021
CviJI	RGCY	9 cut(s)	11, 56, 82, 224, 268, 310, 887, 899, 997
CviKI_1	RGCY	9 cut(s)	11, 56, 82, 224, 268, 310, 887, 899, 997
CviQI	GTAC	3 cut(s)	192, 684, 934
DdeI	CTNAG	2 cut(s)	613, 651
DpnI	GATC	4 cut(s)	48, 363, 750, 959
DpnII	GATC	4 cut(s)	46, 361, 748, 957
DraIII	CACNNNGTG	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	952
EcoT22I	ATGCAT	1 cut(s)	758
FaeI	CATG	2 cut(s)	556, 1024
FalI	AAGNNNNNCTT	6 cut(s)	66, 98, 252, 284, 555, 587
FatI	CATG	2 cut(s)	552, 1020
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	222, 308
FokI	GGATG	3 cut(s)	276, 569, 954
Fsp4HI	GCNGC	2 cut(s)	222, 308
FspBI	CTAG	5 cut(s)	359, 432, 453, 464, 774
GluI	GCNGC	2 cut(s)	222, 308
HapII	CCGG	2 cut(s)	33, 254
HgaI	GACGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	556, 1024
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	5 cut(s)	90, 128, 388, 549, 1028
HpaII	CCGG	2 cut(s)	33, 254
HphI	GGTGA	1 cut(s)	1013
Hpy166II	GTNNAC	3 cut(s)	127, 170, 375
Hpy188I	TCNGA	9 cut(s)	25, 89, 133, 385, 580, 652, 674, 1041, 1053
Hpy188III	TCNNGA	2 cut(s)	146, 254
Hpy8I	GTNNAC	3 cut(s)	127, 170, 375
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	3 cut(s)	121, 185, 687
HpyCH4III	ACNGT	7 cut(s)	16, 62, 167, 191, 379, 701, 814
HpyCH4IV	ACGT	2 cut(s)	203, 405
HpyCH4V	TGCA	4 cut(s)	105, 516, 717, 756
HpyF3I	CTNAG	2 cut(s)	613, 651
HpySE526I	ACGT	2 cut(s)	203, 405
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	556, 1024
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	46, 361, 748, 957
LmnI	GCTCC	2 cut(s)	315, 626
LpnPI	CCDG	6 cut(s)	46, 180, 267, 333, 493, 609
Lsp1109I	GCAGC	2 cut(s)	233, 319
LweI	GCATC	4 cut(s)	108, 274, 446, 1044
MaeI	CTAG	5 cut(s)	359, 432, 453, 464, 774
MaeII	ACGT	2 cut(s)	203, 405
MaeIII	GTNAC	2 cut(s)	521, 701
MalI	GATC	4 cut(s)	48, 363, 750, 959
MboI	GATC	4 cut(s)	46, 361, 748, 957
MboII	GAAGA	3 cut(s)	58, 572, 1023
MflI	RGATCY	2 cut(s)	361, 748
MluCI	AATT	7 cut(s)	139, 424, 445, 668, 779, 845, 952
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	53, 164, 307, 330, 463, 720, 835, 856, 1074
Mph1103I	ATGCAT	1 cut(s)	758
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	5 cut(s)	444, 567, 620, 867, 984
MslI	CAYNNNNRTG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	33, 254
MspR9I	CCNGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	46, 361, 748, 957
NlaIII	CATG	2 cut(s)	556, 1024
NmuCI	GTSAC	1 cut(s)	701
NsiI	ATGCAT	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PfeI	GAWTC	4 cut(s)	90, 388, 549, 1028
PflMI	CCANNNNNTGG	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	223, 309
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PsiI	TTATAA	2 cut(s)	423, 831
PspPI	GGNCC	1 cut(s)	674
PsrI	GAACNNNNNNTAC	2 cut(s)	190, 222
PsuI	RGATCY	2 cut(s)	361, 748
RsaI	GTAC	3 cut(s)	193, 685, 935
RsaNI	GTAC	3 cut(s)	192, 684, 934
RseI	CAYNNNNRTG	1 cut(s)	1019
SaqAI	TTAA	5 cut(s)	444, 567, 620, 867, 984
SatI	GCNGC	2 cut(s)	222, 308
Sau3AI	GATC	4 cut(s)	46, 361, 748, 957
Sau96I	GGNCC	1 cut(s)	674
ScaI	AGTACT	3 cut(s)	193, 685, 935
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	4 cut(s)	108, 274, 446, 1044
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	1019
Sse9I	AATT	7 cut(s)	139, 424, 445, 668, 779, 845, 952
SsiI	CCGC	3 cut(s)	122, 219, 744
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	5 cut(s)	359, 432, 453, 464, 774
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	7 cut(s)	16, 62, 167, 191, 379, 701, 814
TaiI	ACGT	2 cut(s)	206, 408
TaqI	TCGA	7 cut(s)	45, 78, 147, 232, 428, 766, 956
TasI	AATT	7 cut(s)	139, 424, 445, 668, 779, 845, 952
TatI	WGTACW	3 cut(s)	191, 683, 933
TfiI	GAWTC	4 cut(s)	90, 388, 549, 1028
Tru1I	TTAA	5 cut(s)	444, 567, 620, 867, 984
Tru9I	TTAA	5 cut(s)	444, 567, 620, 867, 984
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	221, 307
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	4 cut(s)	380, 472, 573, 752
TspGWI	ACGGA	2 cut(s)	83, 104
Van91I	CCANNNNNTGG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	3 cut(s)	139, 779, 952
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	5 cut(s)	359, 432, 453, 464, 774
ZrmI	AGTACT	3 cut(s)	193, 685, 935
Zsp2I	ATGCAT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.