Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

82176908 .. 82182123

Gene Structure 5216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGAAGATTTCGTCGAAAGTGGTTGGCTTTGGTGGGAGGAAGCATTTGGTGGAGTCTTGTGGAGAGCTTTATGTGGTCGATAGGTATTTTGATCAAGAACAAAATAAGCAACAAGGGACTGGTGTTGAATTAGATTTTTCTCGTTTTGTCCTTTGGTGTGGTGGAAGACACCAAAGATATCAGTCTGGTGAACCCAAGAGGACCATAGCATTCAGAAGTAGGGATCTTCCCCAGGCGGTTCCTCGATATTTTGGCCACTTCCAATTGGGCTTGGCTTCACATAAGCCATCATCTACTGAAACTGAAAGAGCTAACATGTCTTGCACAAACAAGTATGTATTAAGTAGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

118

Amino Acids

13.46

Weight (kDa)

9.47

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	2 cut(s)	70, 314
AluI	AGCT	2 cut(s)	70, 314
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	16, 203
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	175
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	94, 226
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	94, 226
Bst2UI	CCWGG	1 cut(s)	236
BstKTI	GATC	2 cut(s)	97, 229
BstMBI	GATC	2 cut(s)	94, 226
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	204
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	30, 70, 258, 273, 278, 289, 314, 351
CviKI_1	RGCY	8 cut(s)	30, 70, 258, 273, 278, 289, 314, 351
DpnI	GATC	2 cut(s)	96, 228
DpnII	GATC	2 cut(s)	94, 226
EaeI	YGGCCR	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	182
FaeI	CATG	1 cut(s)	322
FaiI	YATR	5 cut(s)	75, 209, 285, 320, 339
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	2 cut(s)	16, 203
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 226
LpnPI	CCDG	4 cut(s)	108, 174, 221, 248
MalI	GATC	2 cut(s)	96, 228
MboI	GATC	2 cut(s)	94, 226
MboII	GAAGA	3 cut(s)	19, 180, 221
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	2 cut(s)	131, 266
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	3 cut(s)	33, 195, 255
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	236
NdeII	GATC	2 cut(s)	94, 226
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	322
PciI	ACATGT	1 cut(s)	318
PctI	GAATGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	344
Sau3AI	GATC	2 cut(s)	94, 226
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	3 cut(s)	72, 89, 316
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	131, 266
SsiI	CCGC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	234
TaqI	TCGA	3 cut(s)	17, 81, 247
TasI	AATT	2 cut(s)	131, 266
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	204
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.