Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002880.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

21075 .. 21686

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002880.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgatttatagaggagggcatttggctgttatgaggtatggggatgagggctggattcgtgtggacgaaaacaactctcattatgatgatctcattgtgtacaagggtcagtgctatgttgttgataaatggggcacgatatcgtggataagtcgggccttgcaggtgattcagtactcgccgcccttgtgtgggtttggtgcacacaagcatttggttgagtgttgcggtgatctttgtgtggtcgacaggtatcttggtaatgagcctcagaggacgtttaactacatacattgtgatggcgaggtggtggactttaaggtttatcggctcgatgaggaatgggcgacgtgggtcaatgtgacaaacttgggggatcaagtcattattttgagctatgatggagctttctcggtttcaaccagagactttcctggggtgaagggaaattgcattatgttcactgaacaagactttggtcctttaccagctgtaattggaatgcgatccagaagtcgtcaccgtcgtgtgtttgacttacaggatggtagcatgagcaagattggctattctcagttgttccggacaccctcaaattggctcactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

203

Amino Acids

23.29

Weight (kDa)

5.84

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	246
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	2 cut(s)	182, 228
AclWI	GGATC	2 cut(s)	384, 501
AfaI	GTAC	2 cut(s)	101, 176
AfiI	CCNNNNNNNGG	3 cut(s)	191, 192, 597
AgsI	TTSAA	1 cut(s)	420
AjiI	CACGTC	1 cut(s)	351
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	3 cut(s)	396, 407, 491
AluI	AGCT	3 cut(s)	396, 407, 491
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	384, 501
Aor13HI	TCCGGA	1 cut(s)	582
AoxI	GGCC	1 cut(s)	156
ApaLI	GTGCAC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	156, 479
AsuHPI	GGTGA	4 cut(s)	178, 242, 451, 512
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	2 cut(s)	137, 205
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	3 cut(s)	293, 395, 539
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	479
BmgBI	CACGTC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	156, 479
BmrFI	CCNGG	1 cut(s)	435
BoxI	GACNNNNGTC	2 cut(s)	353, 477
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 192, 597
BseAI	TCCGGA	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	49, 550
BseLI	CCNNNNNNNGG	3 cut(s)	191, 192, 597
BseMII	CTCAG	2 cut(s)	284, 587
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	137, 205
BshFI	GGCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	583
BslI	CCNNNNNNNGG	3 cut(s)	191, 192, 597
BsmAI	GTCTC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	137, 205
Bsp13I	TCCGGA	1 cut(s)	582
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	88, 232, 376, 506
BspACI	CCGC	2 cut(s)	182, 228
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	283, 586
BspEI	TCCGGA	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	2 cut(s)	384, 501
BsrGI	TGTACA	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	4 cut(s)	88, 232, 376, 506
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	270, 573
BstF5I	GGATG	2 cut(s)	49, 550
BstKTI	GATC	4 cut(s)	91, 235, 379, 509
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	4 cut(s)	88, 232, 376, 506
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	435
BstPAI	GACNNNNGTC	2 cut(s)	353, 477
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	137, 205
BsuRI	GGCC	1 cut(s)	158
BtrI	CACGTC	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	49, 550
BtsIMutI	CAGTG	2 cut(s)	116, 462
BveI	ACCTGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	156, 479
Csp6I	GTAC	2 cut(s)	100, 175
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	2 cut(s)	100, 175
DdeI	CTNAG	2 cut(s)	270, 573
DpnI	GATC	4 cut(s)	90, 234, 378, 508
DpnII	GATC	4 cut(s)	88, 232, 376, 506
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	1 cut(s)	556
FaiI	YATR	9 cut(s)	9, 32, 39, 84, 117, 290, 399, 458, 554
FatI	CATG	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	2 cut(s)	56, 557
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	1 cut(s)	556
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	55, 169
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	4 cut(s)	178, 242, 451, 512
Hpy166II	GTNNAC	6 cut(s)	64, 100, 203, 247, 313, 462
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	510, 583
Hpy8I	GTNNAC	6 cut(s)	64, 100, 203, 247, 313, 462
Hpy99I	CGWCG	2 cut(s)	352, 528
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	2 cut(s)	278, 350
HpyCH4V	TGCA	3 cut(s)	163, 203, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	2 cut(s)	270, 573
HpySE526I	ACGT	2 cut(s)	278, 350
Hsp92II	CATG	1 cut(s)	556
Kpn2I	TCCGGA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	88, 232, 376, 506
LmnI	GCTCC	1 cut(s)	404
MaeII	ACGT	2 cut(s)	278, 350
MaeIII	GTNAC	2 cut(s)	361, 518
MalI	GATC	4 cut(s)	90, 234, 378, 508
MboI	GATC	4 cut(s)	88, 232, 376, 506
MhlI	GDGCHC	2 cut(s)	137, 205
MluCI	AATT	4 cut(s)	448, 495, 595, 607
MnlI	CCTC	9 cut(s)	5, 8, 27, 40, 267, 279, 298, 331, 601
MroI	TCCGGA	1 cut(s)	582
MseI	TTAA	2 cut(s)	282, 318
MslI	CAYNNNNRTG	3 cut(s)	84, 297, 525
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	564
NdeII	GATC	4 cut(s)	88, 232, 376, 506
NlaIII	CATG	1 cut(s)	556
NmuCI	GTSAC	2 cut(s)	361, 518
OliI	CACNNNNGTG	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	523
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	55, 169
PkrI	GCNGC	1 cut(s)	183
PshAI	GACNNNNGTC	2 cut(s)	353, 477
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	156, 479
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	101, 176
RsaNI	GTAC	2 cut(s)	100, 175
RseI	CAYNNNNRTG	3 cut(s)	84, 297, 525
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	282, 318
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	4 cut(s)	88, 232, 376, 506
Sau96I	GGNCC	2 cut(s)	156, 479
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	137, 205
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	3 cut(s)	84, 297, 525
Sse9I	AATT	4 cut(s)	448, 495, 595, 607
SsiI	CCGC	2 cut(s)	182, 228
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	2 cut(s)	281, 353
TaqI	TCGA	2 cut(s)	246, 333
TasI	AATT	4 cut(s)	448, 495, 595, 607
TatI	WGTACW	2 cut(s)	99, 174
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	55, 169
Tru1I	TTAA	2 cut(s)	282, 318
Tru9I	TTAA	2 cut(s)	282, 318
TscAI	CASTG	2 cut(s)	116, 469
TseFI	GTSAC	2 cut(s)	361, 518
Tsp45I	GTSAC	2 cut(s)	361, 518
TspRI	CASTG	2 cut(s)	116, 469
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	246
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.