RchiOBHm_Chr2g0098121

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000246
Physical Location & Seq
Forward (+)
10578391 .. 10579733
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47293

Sequence Viewer

Length: 771 bp
ATGCTTCCAAAGCCGTATCGGAATTCTCCAATTCCGCAGCGTCTGCTCCTCATGGCATTCCTCTCTCCCTCCTTCCCAGCAATTTCCCCTCCTCCTTTCCCCCTCAAGTTCTCCTCCCCCGGCGAAGACTCTCCCGGAAACCATGCTTCATTGTTCCAATCAACAATCTACCGCATGGAGTCATGCATTGACGAGGATAACTGCGGTTCTTCACCATCAAACCTTTGTTCGAAGCCATGGTTGGTGAAGTTTGAGGAGGACCCCAGTTCTGGTATAATGCGTTTACTAGATCCGCTACACAAGTCGTATGGACTTAAATTTGCCGAGAACAATGTTACTATTAATTCTGTGCACAAATTGGTAGTCCTCCCTCGTAACAATTTGGACTTTGGTGATGTTTGTGCTGTTTTTATGATTTATAATGAAGGCAAGCTGGGTTTTATGAGATTTGGAGATGATAAGTTGACCCATGTGGATGAGGAAAACTCCTACTATGATGATATTATTGTGTACAAGGGTCAATGCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCGCTATTGTCGTGTGGATTTGGTGGGCAGAAGCATTTGGTTGAGTCGTGTGGTGATCTTTATGTGGTCGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGACGAGTACATTTTCGGGAAGTATCACAATTCGCGCTATGATTCTGATGCAATCGATTTTAAAGTTTAG

Protein Analysis

256

Amino Acids

28.98

Weight (kDa)

5.24

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 76 - 230 2.1e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AccII CGCG 1 cut(s) 736
AciI CCGC 5 cut(s) 35, 172, 204, 293, 593
AclWI GGATC 2 cut(s) 284, 574
AcsI RAATTY 2 cut(s) 22, 317
AfaI GTAC 3 cut(s) 512, 668, 710
AfiI CCNNNNNNNGG 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 433, 569
AluI AGCT 2 cut(s) 433, 569
Alw21I GWGCWC 1 cut(s) 354
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 2 cut(s) 284, 574
AlwNI CAGNNNCTG 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 22, 317
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AseI ATTAAT 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 550
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 120, 135
AsuHPI GGTGA 6 cut(s) 204, 256, 404, 589, 656, 691
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 709
BcnI CCSGG 2 cut(s) 120, 135
BfaI CTAG 1 cut(s) 287
BisI GCNGC 2 cut(s) 38, 593
BlsI GCNGC 2 cut(s) 39, 594
BmcAI AGTACT 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 120, 135
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 120, 135
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 739
BmuI ACTGGG 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpmI CTGGAG 1 cut(s) 593
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 2 cut(s) 120, 135
Bsa29I ATCGAT 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 118, 236
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 264, 583
BseCI ATCGAT 1 cut(s) 756
BseDI CCNNGG 2 cut(s) 118, 236
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 264, 583
BseRI GAGGAG 4 cut(s) 38, 81, 103, 269
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 49
BseYI CCCAGC 2 cut(s) 76, 433
Bsh1236I CGCG 1 cut(s) 736
BshVI ATCGAT 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 120, 135
BslI CCNNNNNNNGG 1 cut(s) 269
BsmI GAATGC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 4 cut(s) 289, 579, 646, 661
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 5 cut(s) 35, 172, 204, 293, 593
BspDI ATCGAT 1 cut(s) 756
BspFNI CGCG 1 cut(s) 736
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 284, 574
BspT104I TTCGAA 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 2 cut(s) 264, 583
BssECI CCNNGG 2 cut(s) 118, 236
BssMI GATC 4 cut(s) 289, 579, 646, 661
BssT1I CCWWGG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 510
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 736
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 4 cut(s) 292, 582, 649, 664
BstMBI GATC 4 cut(s) 289, 579, 646, 661
BstMWI GCNNNNNNNGC 2 cut(s) 10, 43
BstSCI CCNGG 2 cut(s) 118, 133
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 756
BsuTUI ATCGAT 1 cut(s) 756
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 431
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 756
CseI GACGC 1 cut(s) 29
Csp6I GTAC 3 cut(s) 511, 667, 709
CviAII CATG 6 cut(s) 52, 143, 175, 183, 237, 470
CviJI RGCY 4 cut(s) 13, 235, 433, 569
CviKI_1 RGCY 4 cut(s) 13, 235, 433, 569
CviQI GTAC 3 cut(s) 511, 667, 709
DpnI GATC 4 cut(s) 291, 581, 648, 663
DpnII GATC 4 cut(s) 289, 579, 646, 661
DraI TTTAAA 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 6 cut(s) 55, 146, 178, 186, 240, 473
FatI CATG 6 cut(s) 51, 142, 174, 182, 236, 469
Fnu4HI GCNGC 2 cut(s) 38, 593
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 38, 593
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 737
GluI GCNGC 2 cut(s) 38, 593
GsaI CCCAGC 2 cut(s) 80, 437
GsuI CTGGAG 1 cut(s) 593
HapII CCGG 2 cut(s) 120, 135
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 738
Hin1II CATG 6 cut(s) 55, 146, 178, 186, 240, 473
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 4 cut(s) 128, 179, 635, 743
HpaII CCGG 2 cut(s) 120, 135
HphI GGTGA 6 cut(s) 204, 256, 404, 589, 656, 691
Hpy166II GTNNAC 4 cut(s) 284, 352, 465, 511
Hpy188I TCNGA 2 cut(s) 21, 748
Hpy188III TCNNGA 2 cut(s) 572, 718
Hpy8I GTNNAC 4 cut(s) 284, 352, 465, 511
HpyAV CCTTC 2 cut(s) 82, 419
HpyCH4V TGCA 3 cut(s) 186, 352, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 43
Hsp92II CATG 6 cut(s) 55, 146, 178, 186, 240, 473
HspAI GCGC 1 cut(s) 736
Kzo9I GATC 4 cut(s) 289, 579, 646, 661
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 9 cut(s) 90, 133, 148, 255, 277, 419, 557, 596, 682
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 739
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 334, 374, 689
MalI GATC 4 cut(s) 291, 581, 648, 663
MboI GATC 4 cut(s) 289, 579, 646, 661
MboII GAAGA 2 cut(s) 137, 201
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 9 cut(s) 22, 30, 81, 317, 343, 356, 379, 562, 730
MlyI GAGTC 3 cut(s) 122, 188, 644
Mph1103I ATGCAT 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 3 cut(s) 315, 342, 762
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 2 cut(s) 120, 135
MspR9I CCNGG 2 cut(s) 120, 135
Mva1269I GAATGC 1 cut(s) 56
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 2 cut(s) 10, 43
NciI CCSGG 2 cut(s) 120, 135
NcoI CCATGG 1 cut(s) 236
NdeII GATC 4 cut(s) 289, 579, 646, 661
NlaIII CATG 6 cut(s) 55, 146, 178, 186, 240, 473
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 188
NspV TTCGAA 1 cut(s) 230
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 2 cut(s) 39, 594
PleI GAGTC 3 cut(s) 122, 187, 643
PpsI GAGTC 3 cut(s) 122, 187, 643
PpuMI RGGWCCY 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 2 cut(s) 76, 433
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PspPPI RGGWCCY 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 3 cut(s) 512, 668, 710
RsaNI GTAC 3 cut(s) 511, 667, 709
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 3 cut(s) 315, 342, 762
SatI GCNGC 2 cut(s) 38, 593
Sau3AI GATC 4 cut(s) 289, 579, 646, 661
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 668
SchI GAGTC 3 cut(s) 122, 188, 644
ScrFI CCNGG 2 cut(s) 120, 135
SduI GDGCHC 1 cut(s) 354
SetI ASST 4 cut(s) 225, 435, 571, 579
SfaNI GCATC 1 cut(s) 739
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 9 cut(s) 22, 30, 81, 317, 343, 356, 379, 562, 730
SsiI CCGC 5 cut(s) 35, 172, 204, 293, 593
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 118, 133
StyI CCWWGG 1 cut(s) 236
TaqI TCGA 3 cut(s) 230, 660, 756
TasI AATT 9 cut(s) 22, 30, 81, 317, 343, 356, 379, 562, 730
TatI WGTACW 3 cut(s) 510, 666, 708
TauI GCSGC 1 cut(s) 595
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 3 cut(s) 315, 342, 762
Tru9I TTAA 3 cut(s) 315, 342, 762
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 2 cut(s) 138, 438
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 2 cut(s) 22, 317
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.