Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

9237731 .. 9239584

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTGTTTACTGGATCTGGTGACTGATTCACTGGTCAGGTATGAGTTCAATCTATTTGACTTTCGGCTTGTGGAATTGCGAAAGTCATATGTTCTTAAAGATACCGAGTATGTCTGTTTTCCTGTTGATTCCGTGCAAAAAGTGGTGGTTATGACTGATGAGCATTTGAACATTGATAATGTGTATGCGGTATTTATGATTTTTAAGAGAGGGAATCTGGGTTTTGGGAGGGTTGGAGATGAGAACTTGATCAATGTCGATGAACAAAACTCGGATTATCATGATATGATCATCATTTACAAGGGTCAATGCTATGTTGTTGATTATTGGGGGATAATTTCATGGGTCAATTCAGCTTTGGAGGTGATTCAGTTTTCGCCTCCGATATGTGGGTCTGGTGGGCAGAAGCATTTGGTGGAATCTTGTGGTGATCTTTACGTGGTTGTTCAGTACAGTGCAACGTTGACTTGCCAGGGCAATAGGAGAGTTAGGTACTCACACCAAGAGGATGAATATCCTAAAGCAATTGGTTTTAAAGTTTATAAGCTGGATCAAGAATGGGGTAATTATAAATGGGTCAATATGAAAGACTTGGGAGATCGAGTGTTTATTTTAAGCAATGATAGGTCTTTCTCTGTCTCCACCAGAGAGTTTGCTGGAGTGAAAGGAAATTGCATTTTCTTCATTGCACAAGCATCAGCAAGGTGTTACAGTTGTGTGTTCAGTTTGGAGGATGGTAGGATTAGGAACCTAGCATCTTCGGAATGTTCTCAGATGGTCCAGCCACCTTCAAATTTGCTCAACCCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

270

Amino Acids

30.95

Weight (kDa)

5.18

Isoelectric Point (pI)

25.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	43 - 230	4.2e-31	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	543, 570
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	461
AclWI	GGATC	2 cut(s)	21, 558
AcsI	RAATTY	1 cut(s)	793
AfaI	GTAC	2 cut(s)	452, 494
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	49, 169, 792
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	2 cut(s)	356, 547
AluI	AGCT	2 cut(s)	356, 547
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	21, 558
ApoI	RAATTY	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	3 cut(s)	31, 376, 440
AvaII	GGWCC	1 cut(s)	778
BccI	CCATC	2 cut(s)	728, 769
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	2 cut(s)	249, 288
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	752
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	749
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	2 cut(s)	704, 764
BpmI	CTGGAG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	15, 36
Bse3DI	GCAATG	2 cut(s)	625, 684
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	2 cut(s)	514, 739
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	2 cut(s)	625, 684
BseMII	CTCAG	1 cut(s)	785
BseNI	ACTGG	2 cut(s)	15, 36
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	643
Bsp143I	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	784
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	21, 558
BsrDI	GCAATG	2 cut(s)	625, 684
BsrI	ACTGG	2 cut(s)	15, 36
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	455, 713
BstBAI	YACGTR	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	514, 739
BstKTI	GATC	6 cut(s)	16, 252, 291, 433, 553, 601
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	514, 739
BtsIMutI	CAGTG	2 cut(s)	29, 460
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	451, 493
CviAII	CATG	2 cut(s)	281, 342
CviJI	RGCY	4 cut(s)	67, 356, 547, 784
CviKI_1	RGCY	4 cut(s)	67, 356, 547, 784
CviQI	GTAC	2 cut(s)	451, 493
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	6 cut(s)	15, 251, 290, 432, 552, 600
DpnII	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
DraI	TTTAAA	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	284, 345
FatI	CATG	2 cut(s)	280, 341
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	2 cut(s)	249, 288
FokI	GGATG	2 cut(s)	521, 746
FspBI	CTAG	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	678
Hin1II	CATG	2 cut(s)	284, 345
HincII	GTYRAC	1 cut(s)	465
HindII	GTYRAC	1 cut(s)	465
HinfI	GANTC	5 cut(s)	26, 128, 214, 367, 419
HphI	GGTGA	3 cut(s)	31, 376, 440
Hpy166II	GTNNAC	2 cut(s)	8, 465
Hpy188I	TCNGA	4 cut(s)	274, 384, 763, 774
Hpy188III	TCNNGA	2 cut(s)	281, 554
Hpy8I	GTNNAC	2 cut(s)	8, 465
HpyAV	CCTTC	1 cut(s)	798
HpyCH4III	ACNGT	2 cut(s)	455, 713
HpyCH4IV	ACGT	2 cut(s)	438, 461
HpyCH4V	TGCA	4 cut(s)	136, 458, 675, 689
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	2 cut(s)	438, 461
Hsp92II	CATG	2 cut(s)	284, 345
Ksp22I	TGATCA	2 cut(s)	249, 288
Kzo9I	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
LweI	GCATC	2 cut(s)	704, 764
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	2 cut(s)	438, 461
MaeIII	GTNAC	2 cut(s)	19, 707
MalI	GATC	6 cut(s)	15, 251, 290, 432, 552, 600
MboI	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
MboII	GAAGA	2 cut(s)	673, 750
MfeI	CAATTG	2 cut(s)	525, 808
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	8 cut(s)	74, 336, 349, 525, 565, 670, 793, 808
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	6 cut(s)	203, 222, 355, 390, 499, 724
MseI	TTAA	4 cut(s)	96, 204, 534, 614
MspR9I	CCNGG	1 cut(s)	473
MunI	CAATTG	2 cut(s)	525, 808
MvaI	CCWGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
NlaIII	CATG	2 cut(s)	284, 345
NlaIV	GGNNCC	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	5 cut(s)	26, 128, 214, 367, 419
Ppu21I	YACGTR	1 cut(s)	439
PsiI	TTATAA	2 cut(s)	543, 570
Psp1406I	AACGTT	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	749
PspPI	GGNCC	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	452, 494
RsaNI	GTAC	2 cut(s)	451, 493
SaqAI	TTAA	4 cut(s)	96, 204, 534, 614
Sau3AI	GATC	6 cut(s)	13, 249, 288, 430, 550, 598
Sau96I	GGNCC	1 cut(s)	778
ScrFI	CCNGG	1 cut(s)	473
SfaNI	GCATC	2 cut(s)	704, 764
SinI	GGWCC	1 cut(s)	778
Sse9I	AATT	8 cut(s)	74, 336, 349, 525, 565, 670, 793, 808
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	455, 713
TaiI	ACGT	2 cut(s)	441, 464
TaqI	TCGA	2 cut(s)	258, 601
TasI	AATT	8 cut(s)	74, 336, 349, 525, 565, 670, 793, 808
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	5 cut(s)	26, 128, 214, 367, 419
Tru1I	TTAA	4 cut(s)	96, 204, 534, 614
Tru9I	TTAA	4 cut(s)	96, 204, 534, 614
TscAI	CASTG	2 cut(s)	36, 460
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	276, 330, 525, 599, 673
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	36, 460
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	1 cut(s)	793
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.