Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

5498060 .. 5500272

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCCACCGTTCCAGGGCAGCTGATCTGGGAGATCGTCAAGAAGAACAACTCTTTCTTGGTCAAGCAGTTCGGTCGGAGCCACGCCGGCGTCCGCTTCAGCAAGGAGCCTAACAACCTCTGCAACCTCCACTCCTACAAGCACTCCGGTTTGGCGAACAAGAAGACTGTGAGTATTCAGCCCGGAGGCAAAGACCAGTCGGTGGTGCTCGCCACCACTAAGACCAGGAAGCAGAACAAGCCGGCCAGTCTGGTTCACAAGTCTGTCATGAGGAAGGAGTTTCCTCGCATGGCCAAGGCTGTTACCAATCAGGTGGTTGATAACTTCTACAGACCAGATTTGAAGAAAGCAGCCCTTGCTAGGCTCAGTGTGGTTTACAGGAGTCTCAAGGTGTCAAAATCTGGTGCCAAGAAGAGGAATAGGCAGGCTGTTAGAATGTACGGAAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

150

Amino Acids

16.91

Weight (kDa)

11.17

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 128	7.1e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	3 cut(s)	3, 243, 291
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	4 cut(s)	15, 202, 360, 414
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	13, 224
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	3 cut(s)	3, 243, 291
ApeKI	GCWGC	2 cut(s)	19, 350
AsuC2I	CCSGG	1 cut(s)	183
BalI	TGGCCA	2 cut(s)	5, 293
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	31, 362
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	2 cut(s)	15, 226
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	2 cut(s)	20, 351
BlsI	GCNGC	2 cut(s)	21, 352
Bme1390I	CCNGG	3 cut(s)	15, 183, 226
BmiI	GGNNCC	3 cut(s)	80, 108, 406
BmrFI	CCNGG	3 cut(s)	15, 183, 226
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	14, 294
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 128, 146, 158
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 202, 360, 414
Bse118I	RCCGGY	2 cut(s)	86, 241
Bse1I	ACTGG	2 cut(s)	196, 246
BseBI	CCWGG	2 cut(s)	15, 226
BseDI	CCNNGG	2 cut(s)	14, 294
BseLI	CCNNNNNNNGG	4 cut(s)	15, 202, 360, 414
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	196, 246
BseXI	GCAGC	2 cut(s)	31, 362
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	5, 245, 293
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	4 cut(s)	87, 147, 183, 242
BslI	CCNNNNNNNGG	4 cut(s)	15, 202, 360, 414
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	5, 245, 293
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	24, 33
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	3 cut(s)	5, 245, 293
BspCNI	CTCAG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	80, 108, 406
BspT107I	GGYRCC	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	86, 241
BsrI	ACTGG	2 cut(s)	196, 246
BssAI	RCCGGY	2 cut(s)	86, 241
BssECI	CCNNGG	2 cut(s)	14, 294
BssMI	GATC	2 cut(s)	24, 33
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	15, 226
Bst4CI	ACNGT	2 cut(s)	10, 169
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	88, 210, 243, 426
BstDEI	CTNAG	2 cut(s)	219, 365
BstKTI	GATC	2 cut(s)	27, 36
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	24, 33
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
BstNI	CCWGG	2 cut(s)	15, 226
BstSCI	CCNGG	3 cut(s)	13, 181, 224
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	31, 362
BstV2I	GAAGAC	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	5, 245, 293
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	88, 210, 243, 426
CciI	TCATGA	1 cut(s)	267
Cfr10I	RCCGGY	2 cut(s)	86, 241
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	268, 289
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	219, 365
DpnI	GATC	2 cut(s)	26, 35
DpnII	GATC	2 cut(s)	24, 33
EaeI	YGGCCR	3 cut(s)	3, 243, 291
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	13, 224
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	271, 292
FaiI	YATR	2 cut(s)	269, 290
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	2 cut(s)	267, 288
Fnu4HI	GCNGC	2 cut(s)	20, 351
Fsp4HI	GCNGC	2 cut(s)	20, 351
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	20, 351
HaeIII	GGCC	3 cut(s)	5, 245, 293
HapII	CCGG	4 cut(s)	87, 147, 183, 242
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	271, 292
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	4 cut(s)	87, 147, 183, 242
Hpy166II	GTNNAC	2 cut(s)	256, 376
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	40, 268
Hpy8I	GTNNAC	2 cut(s)	256, 376
HpyAV	CCTTC	2 cut(s)	268, 438
HpyCH4III	ACNGT	2 cut(s)	10, 169
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
HpyF3I	CTNAG	2 cut(s)	219, 365
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	271, 292
KroI	GCCGGC	2 cut(s)	86, 241
KroNI	GCCGGC	2 cut(s)	88, 243
Kzo9I	GATC	2 cut(s)	24, 33
LmnI	GCTCC	2 cut(s)	78, 106
Lsp1109I	GCAGC	2 cut(s)	31, 362
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	26, 35
MboI	GATC	2 cut(s)	24, 33
MboII	GAAGA	4 cut(s)	55, 175, 355, 424
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	2 cut(s)	5, 293
MluNI	TGGCCA	2 cut(s)	5, 293
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	128, 137, 179, 264, 294, 408
Mox20I	TGGCCA	2 cut(s)	5, 293
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	2 cut(s)	86, 241
MscI	TGGCCA	2 cut(s)	5, 293
Msp20I	TGGCCA	2 cut(s)	5, 293
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	4 cut(s)	87, 147, 183, 242
MspR9I	CCNGG	3 cut(s)	15, 183, 226
MvaI	CCWGG	2 cut(s)	15, 226
MwoI	GCNNNNNNNGC	3 cut(s)	87, 238, 356
NaeI	GCCGGC	2 cut(s)	88, 243
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	24, 33
NgoMIV	GCCGGC	2 cut(s)	86, 241
NlaIII	CATG	2 cut(s)	271, 292
NlaIV	GGNNCC	3 cut(s)	80, 108, 406
PagI	TCATGA	1 cut(s)	267
PdiI	GCCGGC	2 cut(s)	88, 243
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	21, 352
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	13, 224
PspGI	CCWGG	2 cut(s)	13, 224
PspN4I	GGNNCC	3 cut(s)	80, 108, 406
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SatI	GCNGC	2 cut(s)	20, 351
Sau3AI	GATC	2 cut(s)	24, 33
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	15, 183, 226
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	5 cut(s)	24, 120, 129, 315, 393
SfcI	CTRYAG	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	13, 181, 224
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	10, 169
TaqII	GACCGA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	19, 350
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	202
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.