Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039043.1

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 332

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

atcacaattcccgttctgaagctgatgcagttgattttaaagtttataagttggatcaagaatggggtaaatgggttaatgagaggaacttgggagatcaagtttttattttaagcaatgatgtgtctttctctgtttccgccagagagtttgctggagtcaagggaaattgcattttttttgttgaacgagtggcgtctcctggtcctggaagagcaaaaagggattgcagtcgtgtgttcaatttagaggatggtagaattaggaacctagcatcttggtgcagttctcagatggtccaaccaccttcgacttggctcggccctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

6.79

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	187, 243
AjnI	CCWGG	2 cut(s)	201, 207
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	205, 297, 322
AvaII	GGWCC	2 cut(s)	205, 297
BccI	CCATC	2 cut(s)	247, 288
BciT130I	CCWGG	2 cut(s)	203, 209
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	203, 209
Bme18I	GGWCC	2 cut(s)	205, 297
BmgT120I	GGNCC	3 cut(s)	205, 297, 322
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	203, 209
BmsI	GCATC	2 cut(s)	15, 283
BpmI	CTGGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	203, 209
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	54, 96
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	123
BssMI	GATC	2 cut(s)	54, 96
BssNI	GRCGYC	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	203, 209
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	57, 99
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	54, 96
BstNI	CCWGG	2 cut(s)	203, 209
BstSCI	CCNGG	2 cut(s)	201, 207
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	205, 297, 322
CseI	GACGC	1 cut(s)	185
CviJI	RGCY	3 cut(s)	22, 318, 323
CviKI_1	RGCY	3 cut(s)	22, 318, 323
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	2 cut(s)	56, 98
DpnII	GATC	2 cut(s)	54, 96
DraI	TTTAAA	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	205, 297
Eco57I	CTGAAG	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	201, 207
Esp3I	CGTCTC	1 cut(s)	203
FaiI	YATR	1 cut(s)	47
FokI	GGATG	1 cut(s)	265
FspBI	CTAG	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	18, 293
Hpy188III	TCNNGA	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	28, 173, 230, 284
HpyF3I	CTNAG	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	54, 96
LguI	GCTCTTC	1 cut(s)	207
LpnPI	CCDG	6 cut(s)	140, 156, 188, 194, 215, 221
LweI	GCATC	2 cut(s)	15, 283
MaeI	CTAG	1 cut(s)	271
MalI	GATC	2 cut(s)	56, 98
MboI	GATC	2 cut(s)	54, 96
MboII	GAAGA	1 cut(s)	224
MluCI	AATT	4 cut(s)	6, 168, 243, 260
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	32, 324
MnlI	CCTC	2 cut(s)	77, 243
MseI	TTAA	3 cut(s)	38, 77, 112
MslI	CAYNNNNRTG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	203, 209
MvaI	CCWGG	2 cut(s)	203, 209
NdeII	GATC	2 cut(s)	54, 96
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	207
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	201, 207
PspGI	CCWGG	2 cut(s)	201, 207
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	205, 297, 322
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	38, 77, 112
Sau3AI	GATC	2 cut(s)	54, 96
Sau96I	GGNCC	3 cut(s)	205, 297, 322
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	203, 209
SetI	ASST	3 cut(s)	24, 272, 309
SfaNI	GCATC	2 cut(s)	15, 283
SinI	GGWCC	2 cut(s)	205, 297
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	4 cut(s)	6, 168, 243, 260
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	271
StyD4I	CCNGG	2 cut(s)	201, 207
TaqI	TCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	6, 168, 243, 260
Tru1I	TTAA	3 cut(s)	38, 77, 112
Tru9I	TTAA	3 cut(s)	38, 77, 112
VpaK11BI	GGWCC	2 cut(s)	205, 297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.