Rh2CG076100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000246
Physical Location & Seq
Reverse (-)
6224243 .. 6224698
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG076100.1

Sequence Viewer

Length: 456 bp
ATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCGTCATGGAAGACACCAAAGATATCAGTCTAGTGAACTCAAGGTAGTTGATTTTAAGGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATCGAGCGTTTTTCTTGGCTATGGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAGAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGAGATCTTCCCCAGGCGATTCCCAAATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCGTATTCTCTGGATTGA

Protein Analysis

151

Amino Acids

17.44

Weight (kDa)

5.1

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 26 - 99 2.2e-19 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 2 cut(s) 154, 179
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 189, 424
AluI AGCT 2 cut(s) 189, 424
Alw21I GWGCWC 1 cut(s) 426
AoxI GGCC 2 cut(s) 240, 407
AspS9I GGNCC 2 cut(s) 241, 355
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 409
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 10
BfaI CTAG 2 cut(s) 105, 324
BglII AGATCT 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 241, 355
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpuEI CTTGAG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 242, 409
BsiHKAI GWGCWC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 250
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 2 cut(s) 242, 409
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 3 cut(s) 10, 196, 377
BspANI GGCC 2 cut(s) 242, 409
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 430
BspQI GCTCTTC 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 3 cut(s) 10, 196, 377
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 283, 311, 349
BstKTI GATC 3 cut(s) 13, 199, 380
BstMBI GATC 3 cut(s) 10, 196, 377
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 2 cut(s) 242, 409
Cfr13I GGNCC 2 cut(s) 241, 355
CseI GACGC 1 cut(s) 65
CviAII CATG 3 cut(s) 80, 340, 435
CviJI RGCY 8 cut(s) 38, 189, 215, 242, 254, 409, 424, 429
CviKI_1 RGCY 8 cut(s) 38, 189, 215, 242, 254, 409, 424, 429
DdeI CTNAG 3 cut(s) 283, 311, 349
DpnI GATC 3 cut(s) 12, 198, 379
DpnII GATC 3 cut(s) 10, 196, 377
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco32I GATATC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 385
EcoRV GATATC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 3 cut(s) 83, 343, 438
FaiI YATR 5 cut(s) 81, 218, 341, 360, 436
FatI CATG 3 cut(s) 79, 339, 434
FbaI TGATCA 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 426
FspBI CTAG 2 cut(s) 105, 324
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 242, 409
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 3 cut(s) 83, 343, 438
HinfI GANTC 1 cut(s) 392
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 286, 369
Hpy188III TCNNGA 2 cut(s) 14, 449
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 138, 261, 273
HpyF3I CTNAG 3 cut(s) 283, 311, 349
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 3 cut(s) 83, 343, 438
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 196, 377
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 6 cut(s) 24, 240, 342, 372, 399, 434
MaeI CTAG 2 cut(s) 105, 324
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 12, 198, 379
MboI GATC 3 cut(s) 10, 196, 377
MboII GAAGA 3 cut(s) 96, 196, 372
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 426
MlsI TGGCCA 1 cut(s) 409
MluCI AATT 3 cut(s) 248, 268, 417
MluNI TGGCCA 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 257, 346, 423
Mox20I TGGCCA 1 cut(s) 409
MscI TGGCCA 1 cut(s) 409
MseI TTAA 2 cut(s) 129, 300
Msp20I TGGCCA 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 387
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 387
NdeII GATC 3 cut(s) 10, 196, 377
NlaIII CATG 3 cut(s) 83, 343, 438
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 405
NspI RCATGY 1 cut(s) 438
PciI ACATGT 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 179
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 250
PscI ACATGT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 2 cut(s) 241, 355
PsuI RGATCY 1 cut(s) 377
SacI GAGCTC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 129, 300
Sau3AI GATC 3 cut(s) 10, 196, 377
Sau96I GGNCC 2 cut(s) 241, 355
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 426
SetI ASST 5 cut(s) 120, 135, 191, 415, 426
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 248, 268, 417
SspI AATATT 1 cut(s) 402
SspMI CTAG 2 cut(s) 105, 324
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 199
TasI AATT 3 cut(s) 248, 268, 417
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 129, 300
Tru9I TTAA 2 cut(s) 129, 300
TspDTI ATGAA 2 cut(s) 303, 328
TspGWI ACGGA 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 355
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 105, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.