Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

15050771 .. 15051475

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGACGACGAAGGAGTGGTCCGATCTTCCAAAGGAGCTATGGCCGGCAATCGGAAATCGCCTCGACAACCGCCTCGACGTTCTCCGATTTCGCAGCGTCTGCAAGACATGGCGCTCCTCCGTCTCCCCTTTTCAGCAACCCGTTACCCCTCCTCTGCCCCTCATCTTCTCTTCCCCTCCTGCCGCCGAGGATGGCGGAGCTCTGCAGACTCAACCCAAAGCCCTACTCTTTCAAATCAAAGTCTATCGGATGGAATCGCTCGTCGGCGAAAAGCCCAATTCGTCAAAACCGTGGGTGGTGAAGTTTGAGGAGTCGAGTTCCGGGGACCTGCGATTGCTGCATCCAATCAGTAATAAGCCGCTCAGGTTTTTCCCTGCATCTAACTCTTTAAAGGAATTCAATTTGTTGGACTTTAAGATGGTCGAATTGCGAAAATCGTATAGTCTGCAGTTTAGAAATAGTCTCAACGTTGTTACGGCTTGTGTGAACAAAGTGGTAGTCATGGATGCAAAAAAGTTGAATGATTGTGGTATTTTTATGATTTGCAATGGCGGAAAGTTGGGTTTCTTGAGATTCGGGGATGAGAAATGGACCCATGTGGATGAACAAAACTCACACTACGATGATCGATTATTGTGTATAAGGGTCAATGCTATGTTGTCGATAGATGGGGAACAATTTCATGGGTCAATTCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

235

Amino Acids

26.63

Weight (kDa)

8.78

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	94 - 212	1.8e-08	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	5 cut(s)	73, 186, 198, 362, 555
AclI	AACGTT	1 cut(s)	471
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	236, 403, 523
AluBI	AGCT	2 cut(s)	40, 203
AluI	AGCT	2 cut(s)	40, 203
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	130, 470
AlwNI	CAGNNNCTG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	96, 340
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	3 cut(s)	37, 486, 518
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	21, 328, 594
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	3 cut(s)	21, 328, 594
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	108, 327
BccI	CCATC	4 cut(s)	188, 247, 415, 665
BceAI	ACGGC	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	130, 470
BfmI	CTRYAG	2 cut(s)	206, 449
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	97, 186, 341, 362
BlsI	GCNGC	4 cut(s)	98, 187, 342, 363
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	3 cut(s)	21, 328, 594
BmgT120I	GGNCC	3 cut(s)	21, 328, 594
BmiI	GGNNCC	2 cut(s)	329, 596
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	3 cut(s)	352, 389, 499
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	631
BsaJI	CCNNGG	3 cut(s)	189, 293, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	1 cut(s)	46
Bse3DI	GCAATG	1 cut(s)	556
BseCI	ATCGAT	1 cut(s)	631
BseDI	CCNNGG	3 cut(s)	189, 293, 324
BseGI	GGATG	6 cut(s)	199, 258, 343, 514, 589, 610
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	109, 144, 326
BseXI	GCAGC	2 cut(s)	108, 327
BshFI	GGCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	47, 324
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	130, 470
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	25, 628
BspACI	CCGC	5 cut(s)	73, 186, 198, 362, 555
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	329, 596
BspMAI	CTGCAG	2 cut(s)	210, 453
BspMI	ACCTGC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	189, 293, 324
BssMI	GATC	2 cut(s)	25, 628
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	6 cut(s)	199, 258, 343, 514, 589, 610
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	28, 631
BstMAI	GTCTC	2 cut(s)	130, 470
BstMBI	GATC	2 cut(s)	25, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 340
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	206, 449
BstV1I	GCAGC	2 cut(s)	108, 327
Bsu15I	ATCGAT	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	46
BsuTUI	ATCGAT	1 cut(s)	631
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	6 cut(s)	199, 258, 343, 514, 589, 610
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	21, 328, 594
ClaI	ATCGAT	1 cut(s)	631
CseI	GACGC	1 cut(s)	88
CviAII	CATG	4 cut(s)	111, 505, 599, 686
CviJI	RGCY	7 cut(s)	40, 46, 203, 224, 277, 361, 482
CviKI_1	RGCY	7 cut(s)	40, 46, 203, 224, 277, 361, 482
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	2 cut(s)	27, 630
DpnII	GATC	2 cut(s)	25, 628
DraI	TTTAAA	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EciI	GGCGGA	2 cut(s)	213, 570
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	21, 328, 594
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	114, 508, 602, 689
FaiI	YATR	9 cut(s)	43, 112, 444, 506, 542, 600, 644, 659, 687
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	110, 504, 598, 685
Fnu4HI	GCNGC	4 cut(s)	97, 186, 341, 362
FokI	GGATG	6 cut(s)	206, 265, 330, 521, 596, 617
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	4 cut(s)	97, 186, 341, 362
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	97, 186, 341, 362
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	47, 324
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	114, 508, 602, 689
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	211, 257, 314, 576
HpaII	CCGG	2 cut(s)	47, 324
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	5 cut(s)	25, 56, 89, 252, 699
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	3 cut(s)	13, 83, 269
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	2 cut(s)	81, 471
HpyCH4V	TGCA	7 cut(s)	105, 208, 343, 380, 451, 512, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 340
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	2 cut(s)	81, 471
Hsp92II	CATG	4 cut(s)	114, 508, 602, 689
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	25, 628
LmnI	GCTCC	3 cut(s)	37, 122, 200
LpnPI	CCDG	6 cut(s)	60, 195, 337, 344, 352, 390
Lsp1109I	GCAGC	2 cut(s)	108, 327
LweI	GCATC	3 cut(s)	352, 389, 499
MaeII	ACGT	2 cut(s)	81, 471
MaeIII	GTNAC	2 cut(s)	145, 475
MalI	GATC	2 cut(s)	27, 630
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	2 cut(s)	25, 628
MboII	GAAGA	3 cut(s)	20, 160, 165
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	6 cut(s)	280, 398, 403, 428, 680, 693
MlyI	GAGTC	2 cut(s)	205, 323
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	74, 86, 130, 162, 165, 173, 184, 189, 304
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	2 cut(s)	392, 417
MslI	CAYNNNNRTG	2 cut(s)	603, 624
MspI	CCGG	2 cut(s)	47, 324
MspR9I	CCNGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	102, 340
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	2 cut(s)	25, 628
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	114, 508, 602, 689
NlaIV	GGNNCC	2 cut(s)	329, 596
NmeAIII	GCCGAG	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	257, 576
PkrI	GCNGC	4 cut(s)	98, 187, 342, 363
PleI	GAGTC	2 cut(s)	205, 322
PpsI	GAGTC	2 cut(s)	205, 322
PpuMI	RGGWCCY	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	205
Psp1406I	AACGTT	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	329, 596
PspPI	GGNCC	3 cut(s)	21, 328, 594
PspPPI	RGGWCCY	1 cut(s)	328
PstI	CTGCAG	2 cut(s)	210, 453
PstNI	CAGNNNCTG	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	603, 624
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	392, 417
SatI	GCNGC	4 cut(s)	97, 186, 341, 362
Sau3AI	GATC	2 cut(s)	25, 628
Sau96I	GGNCC	3 cut(s)	21, 328, 594
SchI	GAGTC	2 cut(s)	205, 323
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	42, 84, 205, 333, 371, 474
SfaNI	GCATC	3 cut(s)	352, 389, 499
SfcI	CTRYAG	2 cut(s)	206, 449
SinI	GGWCC	3 cut(s)	21, 328, 594
SmiMI	CAYNNNNRTG	2 cut(s)	603, 624
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	6 cut(s)	280, 398, 403, 428, 680, 693
SsiI	CCGC	5 cut(s)	73, 186, 198, 362, 555
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	2 cut(s)	84, 474
TaqI	TCGA	6 cut(s)	66, 78, 317, 426, 631, 665
TasI	AATT	6 cut(s)	280, 398, 403, 428, 680, 693
TauI	GCSGC	2 cut(s)	188, 364
TfiI	GAWTC	2 cut(s)	257, 576
Tru1I	TTAA	2 cut(s)	392, 417
Tru9I	TTAA	2 cut(s)	392, 417
TseI	GCWGC	2 cut(s)	96, 340
TspDTI	ATGAA	2 cut(s)	621, 674
TspGWI	ACGGA	1 cut(s)	112
VpaK11BI	GGWCC	3 cut(s)	21, 328, 594
XapI	RAATTY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.