Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Reverse (-)

51811941 .. 51812345

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGAAGATTTCATCAAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTATGTGGTCGATATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGATGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCGTCGTGGAAGACACCAAAGATATCAGTTTGGTGAACTCAAGGTAGTTGATTTTAAGGCTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGTGCTTGGGTGATCGAGCGTTTTTCTTGGCTATGGATTGTTGTTTCTCTGTTTGGCCCAAGAATTGGCTGGGTGCAAAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

134

Amino Acids

15.54

Weight (kDa)

8.61

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	13 - 114	6.2e-11	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	238, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	16, 203, 290
BbsI	GAAGAC	1 cut(s)	175
BccI	CCATC	2 cut(s)	116, 249
BclI	TGATCA	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	94, 280
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	379
BssMI	GATC	2 cut(s)	94, 280
BssNI	GRCGYC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	366, 394
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	97, 283
BstMBI	GATC	2 cut(s)	94, 280
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	149
CviJI	RGCY	5 cut(s)	70, 218, 299, 325, 337
CviKI_1	RGCY	5 cut(s)	70, 218, 299, 325, 337
DdeI	CTNAG	2 cut(s)	366, 394
DpnI	GATC	2 cut(s)	96, 282
DpnII	GATC	2 cut(s)	94, 280
Eco32I	GATATC	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	182
FaiI	YATR	3 cut(s)	75, 86, 302
FbaI	TGATCA	1 cut(s)	94
FokI	GGATG	1 cut(s)	134
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	325
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	3 cut(s)	16, 203, 290
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	222, 344, 356
HpyF3I	CTNAG	2 cut(s)	366, 394
Hsp92I	GRCGYC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 280
LpnPI	CCDG	1 cut(s)	323
MalI	GATC	2 cut(s)	96, 282
MboI	GATC	2 cut(s)	94, 280
MboII	GAAGA	2 cut(s)	19, 180
MluCI	AATT	2 cut(s)	331, 351
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	2 cut(s)	213, 383
NdeII	GATC	2 cut(s)	94, 280
PflMI	CCANNNNNTGG	1 cut(s)	333
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	213, 383
Sau3AI	GATC	2 cut(s)	94, 280
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	65
SetI	ASST	2 cut(s)	72, 204
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	331, 351
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	81, 283
TasI	AATT	2 cut(s)	331, 351
Tru1I	TTAA	2 cut(s)	213, 383
Tru9I	TTAA	2 cut(s)	213, 383
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.