AT2G26160

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000246
Physical Location & Seq
Reverse (-)
11137978 .. 11139451
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26160.1

Sequence Viewer

Length: 996 bp
ATGGAAAAACCTGAGTGGTCTGAATTACCTGGAGACCTCATCAATTTAACCGCAAACCGTTTCTCCTCCATTAGTGACGTCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGCGGCTGCGACACCGAAGAGCTTTCAATGCAACCTTCCTTCCTCCAACAAGATGATAGAGACTGTTCTCTCTCCCACCACTTTCTTCCGTGTAACTGGCCCTTCTTCATGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAATCTCTTGTCTCCTTTCTTTCGCCAGCTCCTAACCCCTTCACAACAAACCCTAGACCTTTTGAAATTTGAGGTTTCAGAGATTCGCCAATCTTACGAGATTCATATATTTGATAAGTATTTAATACAAGGCGTGATAGGTAAAGAAGGACCATCACATATATTGTCTAGAGTTGTTTTCCTAGACAATCTGATTTTCGCAGTCGGACAGGATGACAAAATCTGGTGCTGCAAGAGTGGAGAAGAGAGTAGTAGAATATGGACAAAAATCAAAAACCAAGTTGAAGATTTCTTGGACATTATACTTCATAAAGGACAAGTCTATGCCTTAGACCTAACCGGCGCAATTTGGTGGATTAGTTTATCACCGCTCAGCCTCCTTCAATTCACACCTTCAATTCCAATGGACTACGACGGATATGATAGTTGCAACAAGAGACTCGTTGAGTATTGTGGAGATCTATGCATTATTCATCAACTTCGCTTAAAGAAAGCTTATATCCGAAGGAGTCAAAGGACAGTTGGTTTTAAGGTTTATAAGATGGACGAGTATGTGGCAAAATGGGTTGAGGTTAGGTCCTTGGGAGACAAGGCACTCATTGTGGCTAGGGACAGTTGTTTTACTGTTGTAGCCTCCGAGTACCATGGATGTTTGAACAATTCTATCTACTTCGTTGATAATGTGCGAAAGAGTGTGATAAGAATGAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

331

Amino Acids

37.95

Weight (kDa)

8.98

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 77 - 322 5.2e-39 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AatII GACGTC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 652
AciI CCGC 3 cut(s) 51, 119, 650
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 90, 923
AgsI TTSAA 6 cut(s) 143, 346, 566, 665, 678, 937
AjnI CCWGG 2 cut(s) 28, 107
AluBI AGCT 3 cut(s) 138, 310, 776
AluI AGCT 3 cut(s) 138, 310, 776
Alw26I GTCTC 6 cut(s) 27, 170, 268, 297, 712, 861
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 122, 510
ApoI RAATTY 1 cut(s) 347
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 1 cut(s) 626
AspS9I GGNCC 3 cut(s) 215, 431, 858
AsuHPI GGTGA 1 cut(s) 639
AvaII GGWCC 2 cut(s) 431, 858
BbvI GCAGC 2 cut(s) 109, 497
BccI CCATC 3 cut(s) 234, 442, 817
BciT130I CCWGG 2 cut(s) 30, 109
BclI TGATCA 1 cut(s) 246
BcoDI GTCTC 6 cut(s) 27, 170, 268, 297, 712, 861
BfaI CTAG 4 cut(s) 335, 450, 464, 888
BglII AGATCT 1 cut(s) 739
BisI GCNGC 3 cut(s) 120, 123, 511
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 3 cut(s) 121, 124, 512
Bme1390I CCNGG 2 cut(s) 30, 109
Bme18I GGWCC 2 cut(s) 431, 858
BmgT120I GGNCC 3 cut(s) 215, 431, 858
BmrFI CCNGG 2 cut(s) 30, 109
BmsI GCATC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 107, 861, 925
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 2 cut(s) 217, 273
BseBI CCWGG 2 cut(s) 30, 109
BseDI CCNNGG 3 cut(s) 107, 861, 925
BseGI GGATG 3 cut(s) 245, 499, 935
BseMII CTCAG 1 cut(s) 667
BseNI ACTGG 2 cut(s) 217, 273
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 109, 497
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 621
BslFI GGGAC 1 cut(s) 905
BsmAI GTCTC 6 cut(s) 27, 170, 268, 297, 712, 861
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 246, 739
Bsp1720I GCTNAGC 1 cut(s) 653
Bsp19I CCATGG 1 cut(s) 925
BspACI CCGC 3 cut(s) 51, 119, 650
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 4, 666
BspQI GCTCTTC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 620
BsrI ACTGG 2 cut(s) 217, 273
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 3 cut(s) 107, 861, 925
BssMI GATC 2 cut(s) 246, 739
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 861, 925
Bst2UI CCWGG 2 cut(s) 30, 109
Bst4CI ACNGT 5 cut(s) 59, 181, 802, 896, 907
Bst6I CTCTTC 2 cut(s) 128, 519
BstACI GRCGYC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 12, 610, 653
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 245, 499, 935
BstHHI GCGC 1 cut(s) 626
BstKTI GATC 2 cut(s) 249, 742
BstMAI GTCTC 6 cut(s) 27, 170, 268, 297, 712, 861
BstMBI GATC 2 cut(s) 246, 739
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 30, 109
BstSCI CCNGG 2 cut(s) 28, 107
BstSNI TACGTA 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 109, 497
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 245, 499, 935
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 626
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 3 cut(s) 215, 431, 858
Csp6I GTAC 2 cut(s) 89, 922
CviAII CATG 2 cut(s) 225, 926
CviJI RGCY 9 cut(s) 122, 138, 216, 244, 310, 657, 776, 887, 914
CviKI_1 RGCY 9 cut(s) 122, 138, 216, 244, 310, 657, 776, 887, 914
CviQI GTAC 2 cut(s) 89, 922
DdeI CTNAG 3 cut(s) 12, 610, 653
DpnI GATC 2 cut(s) 248, 741
DpnII GATC 2 cut(s) 246, 739
Eam1104I CTCTTC 2 cut(s) 128, 519
EarI CTCTTC 2 cut(s) 128, 519
Eco105I TACGTA 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 861, 925
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 431, 858
EcoO109I RGGNCCY 1 cut(s) 858
EcoRII CCWGG 2 cut(s) 28, 107
EcoT14I CCWWGG 2 cut(s) 861, 925
EcoT22I ATGCAT 1 cut(s) 749
ErhI CCWWGG 2 cut(s) 861, 925
FaeI CATG 2 cut(s) 228, 929
FaqI GGGAC 1 cut(s) 905
FatI CATG 2 cut(s) 224, 925
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 120, 123, 511
FokI GGATG 3 cut(s) 252, 506, 942
Fsp4HI GCNGC 3 cut(s) 120, 123, 511
FspBI CTAG 4 cut(s) 335, 450, 464, 888
GlaI GCGC 1 cut(s) 625
GluI GCNGC 3 cut(s) 120, 123, 511
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 621
HhaI GCGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 228, 929
Hin6I GCGC 1 cut(s) 624
HinP1I GCGC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 5 cut(s) 269, 364, 382, 720, 790
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 639
Hpy166II GTNNAC 2 cut(s) 89, 104
Hpy188I TCNGA 8 cut(s) 22, 251, 268, 361, 474, 488, 785, 919
Hpy188III TCNNGA 1 cut(s) 450
Hpy8I GTNNAC 2 cut(s) 89, 104
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 8 cut(s) 161, 165, 228, 330, 422, 671, 684, 780
HpyCH4III ACNGT 5 cut(s) 59, 181, 802, 896, 907
HpyCH4IV ACGT 2 cut(s) 78, 91
HpyCH4V TGCA 4 cut(s) 147, 513, 711, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 3 cut(s) 12, 610, 653
HpySE526I ACGT 2 cut(s) 78, 91
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 228, 929
HspAI GCGC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 2 cut(s) 246, 739
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 315
Lsp1109I GCAGC 2 cut(s) 109, 497
LweI GCATC 1 cut(s) 105
MaeI CTAG 4 cut(s) 335, 450, 464, 888
MaeII ACGT 2 cut(s) 78, 91
MaeIII GTNAC 2 cut(s) 74, 208
MalI GATC 2 cut(s) 248, 741
MbiI CCGCTC 1 cut(s) 652
MboI GATC 2 cut(s) 246, 739
MboII GAAGA 5 cut(s) 145, 193, 213, 536, 578
MflI RGATCY 1 cut(s) 739
MluCI AATT 7 cut(s) 23, 43, 347, 627, 665, 678, 940
MlyI GAGTC 2 cut(s) 714, 799
MmeI TCCRAC 2 cut(s) 186, 466
MnlI CCTC 8 cut(s) 47, 76, 92, 169, 346, 668, 844, 925
Mph1103I ATGCAT 1 cut(s) 749
MseI TTAA 5 cut(s) 47, 282, 404, 767, 810
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 2 cut(s) 30, 109
MvaI CCWGG 2 cut(s) 30, 109
MwoI GCNNNNNNNGC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 925
NdeII GATC 2 cut(s) 246, 739
NlaIII CATG 2 cut(s) 228, 929
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 3 cut(s) 269, 364, 382
PkrI GCNGC 3 cut(s) 121, 124, 512
PleI GAGTC 2 cut(s) 714, 798
PpsI GAGTC 2 cut(s) 714, 798
Ppu21I YACGTR 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 858
PshBI ATTAAT 1 cut(s) 282
PsiI TTATAA 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 28, 107
PspGI CCWGG 2 cut(s) 28, 107
PspPI GGNCC 3 cut(s) 215, 431, 858
PspPPI RGGWCCY 1 cut(s) 858
PsuI RGATCY 1 cut(s) 739
RsaI GTAC 2 cut(s) 90, 923
RsaNI GTAC 2 cut(s) 89, 922
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 5 cut(s) 47, 282, 404, 767, 810
SatI GCNGC 3 cut(s) 120, 123, 511
Sau3AI GATC 2 cut(s) 246, 739
Sau96I GGNCC 3 cut(s) 215, 431, 858
SchI GAGTC 2 cut(s) 714, 799
ScrFI CCNGG 2 cut(s) 30, 109
SfaNI GCATC 1 cut(s) 105
SinI GGWCC 2 cut(s) 431, 858
SnaBI TACGTA 1 cut(s) 92
Sse9I AATT 7 cut(s) 23, 43, 347, 627, 665, 678, 940
SsiI CCGC 3 cut(s) 51, 119, 650
SspMI CTAG 4 cut(s) 335, 450, 464, 888
StyD4I CCNGG 2 cut(s) 28, 107
StyI CCWWGG 2 cut(s) 861, 925
TaaI ACNGT 5 cut(s) 59, 181, 802, 896, 907
TaiI ACGT 2 cut(s) 81, 94
TasI AATT 7 cut(s) 23, 43, 347, 627, 665, 678, 940
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 269, 364, 382
Tru1I TTAA 5 cut(s) 47, 282, 404, 767, 810
Tru9I TTAA 5 cut(s) 47, 282, 404, 767, 810
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 122, 510
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 213, 374, 578, 743
TspGWI ACGGA 3 cut(s) 74, 194, 711
VpaK11BI GGWCC 2 cut(s) 431, 858
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 449
XspI CTAG 4 cut(s) 335, 450, 464, 888
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.