Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

10580500 .. 10581178

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAGTCATGCATTGACGAGGATAATTGCGGTTCTTCACCATCAAACCTTTGTTCGAAGCCATGGTTGGTGAAGTTTGAGGAGGACCCCAGTTCTGGTATAATGCTTTTACTAGATCCGGTGACTAGTTCGCCTCTCAGGTATTCTCCCAATACTTCTTTAAAGGAATTAAACTTAATGGAGTATCGGATTGTAGAGCTACACAAGTCGTATGAACTTAAATTTGGCGAGAACAATGTTACTATTAATTCTGTGCACAAATTGGGTCAATGCTATGTGGTTGATAAGTGGGGAACGATTTCCTCTATCAATTCAGCTCTGGAGGTGATCCAGTTTTCGCCTCTATTGTCGTGTGGATTTGGTGGGCAGAAGCATTTGGTTGAGTCTTGTGGTGATCTTTATGTGGTTGATCAGTACTATGAGAGGGTGAGTGTTCGTCACGGCAGGGAGGACGAGTACATTTTCGGGAAGTATCACAATTCGTGCTATGATTCTGATGCAATCGATTTTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

4.87

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	110, 322
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	2 cut(s)	416, 458
AfiI	CCNNNNNNNGG	1 cut(s)	95
AhlI	ACTAGT	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 207, 239
AluBI	AGCT	2 cut(s)	199, 317
AluI	AGCT	2 cut(s)	199, 317
Alw21I	GWGCWC	1 cut(s)	258
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	110, 322
ApaLI	GTGCAC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	6 cut(s)	30, 82, 133, 337, 404, 439
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	409
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	2 cut(s)	113, 126
BmcAI	AGTACT	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	341
Bpu14I	TTCGAA	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	90, 331
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	90, 331
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	115, 327, 394, 409
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	110, 322
BspT104I	TTCGAA	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	90, 331
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	4 cut(s)	115, 327, 394, 409
BssT1I	CCWWGG	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	62
BstKTI	GATC	4 cut(s)	118, 330, 397, 412
BstMBI	GATC	4 cut(s)	115, 327, 394, 409
BstSLI	GKGCMC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	504
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	415, 457
CviAII	CATG	2 cut(s)	9, 63
CviJI	RGCY	3 cut(s)	61, 199, 317
CviKI_1	RGCY	3 cut(s)	61, 199, 317
CviQI	GTAC	2 cut(s)	415, 457
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	117, 329, 396, 411
DpnII	GATC	4 cut(s)	115, 327, 394, 409
DraI	TTTAAA	2 cut(s)	162, 511
Eco130I	CCWWGG	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	12, 66
FaiI	YATR	8 cut(s)	10, 64, 101, 213, 276, 402, 420, 489
FatI	CATG	2 cut(s)	8, 62
FbaI	TGATCA	1 cut(s)	409
FspBI	CTAG	2 cut(s)	113, 126
GsuI	CTGGAG	1 cut(s)	341
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	12, 66
HinfI	GANTC	3 cut(s)	5, 383, 491
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	6 cut(s)	30, 82, 133, 337, 404, 439
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	189, 496
Hpy188III	TCNNGA	2 cut(s)	320, 466
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	12, 256, 500
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	12, 66
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	115, 327, 394, 409
LpnPI	CCDG	7 cut(s)	81, 103, 124, 132, 305, 344, 430
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	113, 126
MaeIII	GTNAC	3 cut(s)	121, 238, 437
MalI	GATC	4 cut(s)	117, 329, 396, 411
MboI	GATC	4 cut(s)	115, 327, 394, 409
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	7 cut(s)	25, 167, 221, 247, 260, 310, 478
MlyI	GAGTC	2 cut(s)	14, 392
MnlI	CCTC	9 cut(s)	13, 73, 76, 144, 313, 316, 351, 417, 442
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	6 cut(s)	161, 170, 176, 219, 246, 510
MspI	CCGG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	115, 327, 394, 409
NlaIII	CATG	2 cut(s)	12, 66
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	121, 437
NsiI	ATGCAT	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	491
PleI	GAGTC	2 cut(s)	13, 391
PpsI	GAGTC	2 cut(s)	13, 391
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	2 cut(s)	416, 458
RsaNI	GTAC	2 cut(s)	415, 457
SaqAI	TTAA	6 cut(s)	161, 170, 176, 219, 246, 510
Sau3AI	GATC	4 cut(s)	115, 327, 394, 409
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	2 cut(s)	14, 392
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	5 cut(s)	51, 143, 201, 319, 327
SfaNI	GCATC	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	7 cut(s)	25, 167, 221, 247, 260, 310, 478
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	113, 126
StyI	CCWWGG	1 cut(s)	62
TaqI	TCGA	2 cut(s)	56, 504
TasI	AATT	7 cut(s)	25, 167, 221, 247, 260, 310, 478
TatI	WGTACW	2 cut(s)	414, 456
TfiI	GAWTC	1 cut(s)	491
Tru1I	TTAA	6 cut(s)	161, 170, 176, 219, 246, 510
Tru9I	TTAA	6 cut(s)	161, 170, 176, 219, 246, 510
TseFI	GTSAC	2 cut(s)	121, 437
Tsp45I	GTSAC	2 cut(s)	121, 437
TspDTI	ATGAA	1 cut(s)	228
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	2 cut(s)	113, 126
ZrmI	AGTACT	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.