Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

14585075 .. 14585347

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG123200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCCTCGCTTCCACCCTTCACTTCCTCCGAAATTCCCTCTCCCATTCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACTGTCTACCTCCTACAGAGCCCCTTCACGTCATCACTGGCGCCACCGTCGTCTGGAGGTTGGTTGGTCAAGGTTGAAGAGTGCGACAAAATGCTTCTTCAGAATCAGATCACCTCCAGGCGAATCAGGTACACAAACGGCTCGTCGTCGTCTCCTGAATGTTTCAATTTGTTGGAGTTTAAATCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

90

Amino Acids

10.08

Weight (kDa)

8.74

Isoelectric Point (pI)

91.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	158, 247
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	104
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	58, 123
BmrFI	CCNGG	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	156, 181
BsaHI	GRCGYC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	58, 123
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	85, 129
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	81, 116
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	211
CviJI	RGCY	2 cut(s)	102, 222
CviKI_1	RGCY	2 cut(s)	102, 222
CviQI	GTAC	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DraI	TTTAAA	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	104
GlaI	GCGC	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	156, 181
HaeII	RGCGCY	1 cut(s)	125
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	2 cut(s)	184, 204
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	88, 213
Hpy188I	TCNGA	4 cut(s)	30, 52, 183, 189
Hpy188III	TCNNGA	2 cut(s)	135, 236
Hpy8I	GTNNAC	2 cut(s)	88, 213
Hpy99I	CGWCG	3 cut(s)	133, 229, 232
HpyAV	CCTTC	3 cut(s)	27, 76, 115
HpyCH4III	ACNGT	2 cut(s)	85, 129
HpyCH4IV	ACGT	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	122
HspAI	GCGC	1 cut(s)	122
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	104, 120, 184, 193, 211, 249
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	170, 170
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	3 cut(s)	32, 247, 268
Mly113I	GGCGCC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	15, 36, 48, 73, 80, 101, 131, 205
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	122
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	58, 123
PfeI	GAWTC	2 cut(s)	184, 204
PluTI	GGCGCC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	58, 123
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	65, 93, 113, 142, 156, 197, 212
SfcI	CTRYAG	1 cut(s)	95
SfoI	GGCGCC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	32, 247, 268
SspDI	GGCGCC	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	85, 129
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	32, 247, 268
TfiI	GAWTC	2 cut(s)	184, 204
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	88, 123
TspRI	CASTG	2 cut(s)	88, 123
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.