Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

66651661 .. 66652862

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATATCACAGTCGACTGGTCCGATCTTCCAGTCGAGCTCTGGCCACTGATCGGAGAAAAGCTCGAACTGCGCATCCAGTCTCTCCAATTCCGCAGCGTTTGTCATTCATGGCATTCTTGTGCCTCGCTTCCACCCTTCACTTCCTCCGAAATTCCCTCTCCCATTCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTACAGAGCCCCTTCACGTCATCACTGGCGCCACCGTCGTCTGGAGGTTGGTTGGGAAGTTGTATTTTCTGAGATACATCCTTGGCTCTAGTTCTGTTTGTGGTTTAAAGAAAGTAATTTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAGATGAGAAACTCACATGGTTTAGTAATGGAGGTTTTGTTTTTGATGATGTTATTGTCTATAAGGGTCAGCCATATGTGGTGGATAGCTTGAGTTATGTTTTAAAGATTGATGTGTCTTCAGAAGTGATGGTGAAGATTTCATCAAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTATGTGGTCGATATGTATTTTGATCAAGAACAAAATAAGCAAGAAGGGGCTGGTGTTGAGTTAGATTTTTCTTTATTTGTCCGTTGGCGTCGTGGAAGACACCAAAGATATCAGTTTGGTGAACTCAAGGTAGTTGATTTTAAGGCTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGTGCTTGGGTGATCGAGCGTTTTTCTTGGCTATGGATTGTTGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTGGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAAAAGTTTGGATCTTCCCCAAGCGGTTCCCAGATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCGTATTCTCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

345

Amino Acids

39.21

Weight (kDa)

5.81

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	44 - 286	1.9e-21	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	242
AccI	GTMKAC	2 cut(s)	15, 208
AciI	CCGC	2 cut(s)	94, 972
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	2 cut(s)	44, 989
AcsI	RAATTY	2 cut(s)	153, 388
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	243, 697
AfiI	CCNNNNNNNGG	2 cut(s)	53, 255
AflIII	ACRYGT	1 cut(s)	1016
AgsI	TTSAA	3 cut(s)	775, 800, 950
AjiI	CACGTC	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	5 cut(s)	40, 64, 498, 607, 1006
AluI	AGCT	5 cut(s)	40, 64, 498, 607, 1006
Alw21I	GWGCWC	2 cut(s)	42, 1008
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	967
AoxI	GGCC	2 cut(s)	44, 989
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	153, 388
AspLEI	GCGC	2 cut(s)	75, 245
AspS9I	GGNCC	3 cut(s)	21, 177, 937
AsuHPI	GGTGA	3 cut(s)	553, 740, 827
AvaII	GGWCC	3 cut(s)	21, 177, 937
BalI	TGGCCA	2 cut(s)	46, 991
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	3 cut(s)	42, 225, 1008
BbsI	GAAGAC	2 cut(s)	519, 712
Bbv12I	GWGCWC	2 cut(s)	42, 1008
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	3 cut(s)	168, 532, 786
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	303, 906
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme18I	GGWCC	3 cut(s)	21, 177, 937
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	21, 177, 937
BmiI	GGNNCC	4 cut(s)	179, 244, 976, 1012
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	519, 712
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 995, 1027
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	520, 719
BsaHI	GRCGYC	2 cut(s)	243, 697
BsaJI	CCNNGG	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 255
Bse1I	ACTGG	4 cut(s)	23, 32, 79, 244
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	2 cut(s)	75, 291
BseLI	CCNNNNNNNGG	2 cut(s)	53, 255
BseMII	CTCAG	3 cut(s)	275, 336, 879
BseNI	ACTGG	4 cut(s)	23, 32, 79, 244
BseXI	GCAGC	1 cut(s)	108
BshFI	GGCC	2 cut(s)	46, 991
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	42, 1008
BslI	CCNNNNNNNGG	2 cut(s)	53, 255
BsmAI	GTCTC	1 cut(s)	87
BsmI	GAATGC	2 cut(s)	115, 945
BsnI	GGCC	2 cut(s)	46, 991
Bsp1286I	GDGCHC	3 cut(s)	42, 225, 1008
Bsp143I	GATC	5 cut(s)	25, 51, 631, 817, 959
BspACI	CCGC	2 cut(s)	94, 972
BspANI	GGCC	2 cut(s)	46, 991
BspCNI	CTCAG	3 cut(s)	276, 337, 878
BspLI	GGNNCC	4 cut(s)	179, 244, 976, 1012
BspPI	GGATC	1 cut(s)	967
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	4 cut(s)	23, 32, 79, 244
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	5 cut(s)	25, 51, 631, 817, 959
BssNI	GRCGYC	2 cut(s)	243, 697
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	4 cut(s)	13, 206, 250, 771
BstACI	GRCGYC	2 cut(s)	243, 697
BstC8I	GCNNGC	2 cut(s)	342, 757
BstDEI	CTNAG	5 cut(s)	284, 345, 865, 893, 931
BstF5I	GGATG	2 cut(s)	75, 291
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	75, 245
BstKTI	GATC	5 cut(s)	28, 54, 634, 820, 962
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	5 cut(s)	25, 51, 631, 817, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	1020
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	108
BstV2I	GAAGAC	2 cut(s)	519, 712
BstX2I	RGATCY	1 cut(s)	959
BstYI	RGATCY	1 cut(s)	959
BsuRI	GGCC	2 cut(s)	46, 991
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	75, 291
BtsIMutI	CAGTG	2 cut(s)	47, 237
Cac8I	GCNNGC	2 cut(s)	342, 757
CfoI	GCGC	2 cut(s)	75, 245
Cfr13I	GGNCC	3 cut(s)	21, 177, 937
CseI	GACGC	1 cut(s)	686
CviAII	CATG	4 cut(s)	111, 426, 922, 1017
DdeI	CTNAG	5 cut(s)	284, 345, 865, 893, 931
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	5 cut(s)	27, 53, 633, 819, 961
DpnII	GATC	5 cut(s)	25, 51, 631, 817, 959
DraI	TTTAAA	2 cut(s)	321, 513
EaeI	YGGCCR	2 cut(s)	44, 989
Ecl136II	GAGCTC	2 cut(s)	40, 1006
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	3 cut(s)	42, 225, 1008
Eco32I	GATATC	2 cut(s)	7, 719
Eco47I	GGWCC	3 cut(s)	21, 177, 937
Eco53kI	GAGCTC	2 cut(s)	40, 1006
Eco57I	CTGAAG	1 cut(s)	513
EcoICRI	GAGCTC	2 cut(s)	40, 1006
EcoRV	GATATC	2 cut(s)	7, 719
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	3 cut(s)	42, 225, 1008
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	114, 429, 925, 1020
FatI	CATG	4 cut(s)	110, 425, 921, 1016
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	15, 208
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	2 cut(s)	62, 278
FriOI	GRGCYC	3 cut(s)	42, 225, 1008
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	2 cut(s)	303, 906
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	2 cut(s)	74, 244
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	46, 991
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	2 cut(s)	75, 245
Hin1I	GRCGYC	2 cut(s)	243, 697
Hin1II	CATG	4 cut(s)	114, 429, 925, 1020
Hin6I	GCGC	2 cut(s)	73, 243
HinP1I	GCGC	2 cut(s)	73, 243
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	593
HphI	GGTGA	3 cut(s)	553, 740, 827
Hpy166II	GTNNAC	3 cut(s)	16, 209, 731
Hpy188I	TCNGA	8 cut(s)	25, 56, 151, 173, 285, 379, 532, 868
Hpy188III	TCNNGA	3 cut(s)	256, 635, 1031
Hpy8I	GTNNAC	3 cut(s)	16, 209, 731
Hpy99I	CGWCG	2 cut(s)	254, 702
HpyAV	CCTTC	4 cut(s)	148, 197, 236, 647
HpyCH4III	ACNGT	4 cut(s)	13, 206, 250, 771
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	759, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	5 cut(s)	284, 345, 865, 893, 931
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	243, 697
Hsp92II	CATG	4 cut(s)	114, 429, 925, 1020
HspAI	GCGC	2 cut(s)	73, 243
KasI	GGCGCC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	5 cut(s)	25, 51, 631, 817, 959
LmnI	GCTCC	1 cut(s)	1016
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	303, 906
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	901
MalI	GATC	5 cut(s)	27, 53, 633, 819, 961
MboI	GATC	5 cut(s)	25, 51, 631, 817, 959
MboII	GAAGA	5 cut(s)	20, 519, 556, 717, 954
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	1 cut(s)	959
MhlI	GDGCHC	3 cut(s)	42, 225, 1008
MlsI	TGGCCA	2 cut(s)	46, 991
MluCI	AATT	6 cut(s)	89, 153, 330, 388, 850, 999
MluNI	TGGCCA	2 cut(s)	46, 991
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	744, 827
Mox20I	TGGCCA	2 cut(s)	46, 991
MscI	TGGCCA	2 cut(s)	46, 991
MseI	TTAA	5 cut(s)	320, 335, 512, 750, 882
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	2 cut(s)	46, 991
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	2 cut(s)	115, 945
MwoI	GCNNNNNNNGC	1 cut(s)	70
NarI	GGCGCC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	5 cut(s)	25, 51, 631, 817, 959
NlaIII	CATG	4 cut(s)	114, 429, 925, 1020
NlaIV	GGNNCC	4 cut(s)	179, 244, 976, 1012
NmeAIII	GCCGAG	1 cut(s)	987
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	1020
PciI	ACATGT	1 cut(s)	1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	2 cut(s)	115, 945
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	601
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	601
PscI	ACATGT	1 cut(s)	1016
Psp124BI	GAGCTC	2 cut(s)	42, 1008
PspN4I	GGNNCC	4 cut(s)	179, 244, 976, 1012
PspPI	GGNCC	3 cut(s)	21, 177, 937
PsuI	RGATCY	1 cut(s)	959
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	42, 1008
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	320, 335, 512, 750, 882
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	5 cut(s)	25, 51, 631, 817, 959
Sau96I	GGNCC	3 cut(s)	21, 177, 937
SchI	GAGTC	1 cut(s)	602
SduI	GDGCHC	3 cut(s)	42, 225, 1008
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	216
SfoI	GGCGCC	1 cut(s)	244
SinI	GGWCC	3 cut(s)	21, 177, 937
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	499, 734
SmoI	CTYRAG	2 cut(s)	499, 734
Sse9I	AATT	6 cut(s)	89, 153, 330, 388, 850, 999
SsiI	CCGC	2 cut(s)	94, 972
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	303, 906
SstI	GAGCTC	2 cut(s)	42, 1008
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	4 cut(s)	13, 206, 250, 771
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	5 cut(s)	15, 36, 66, 618, 820
TasI	AATT	6 cut(s)	89, 153, 330, 388, 850, 999
Tru1I	TTAA	5 cut(s)	320, 335, 512, 750, 882
Tru9I	TTAA	5 cut(s)	320, 335, 512, 750, 882
TscAI	CASTG	2 cut(s)	54, 244
TseI	GCWGC	1 cut(s)	96
TspDTI	ATGAA	4 cut(s)	99, 540, 885, 910
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	54, 244
VpaK11BI	GGWCC	3 cut(s)	21, 177, 937
XapI	RAATTY	2 cut(s)	153, 388
XceI	RCATGY	1 cut(s)	1020
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmiI	GTMKAC	2 cut(s)	15, 208
XspI	CTAG	2 cut(s)	303, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.