Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000246

Physical Location & Seq

Genomic Coordinates Forward (+)

21435427 .. 21436810

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57906.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAACCATTTCTATGTGAACAATGAAATTAACAAGAGAATAATTGAGAAAACAAAAGAATCAAATCAGCTACCTAATTTTCTGAGGCTTGAAGCCGAAGATGATCGATTTACCTTGAACGGAAAAAAAGTTGTTCTTGCGGGAGGAGATCGAGTTTTTGGAATAGGGTTTGATGGGAAGATTAGGTTTTGGAATGGAGAGATTTGGACTAGAATCAAAGATCAGATTGGTGAATTCTCTGATATTATTGTTCTCAAAGAGCTAATTTACGTGTTGGATACGAAAGGCATTGTTTGGTGGATTAGTATCGTTAGGTATGGAACTTCACTTACTAATGAATGTGGTGGAGACTTAAGCTTGGTTGCATGTTGTGGAGAGCTTTATATTGTTGATCGTCTTTTTAAAGAGAATGTCTTGAAAAGAAAAGCTGATTACTTGGACTTGGATGATAATGTTTATGTTGGTGTAGCTCCTCGGATTTCTAATGTGATACATGACGATTTTGGGAATGAAAAATGCAATGTGGACCAAGAGGTGGAAATAGAATGTCCCAAAATGGTTGGTTTCAATGTTTATAAGGTTGATGAGGAATTAGGGAAGTGGGTTGAAGTTAAGTCCTTGAGAGATAGTGCGGTTGTGATGGCGACTGATACTTGTTTCTCGGTTATGGCTCATGAGTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009378 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

228

Amino Acids

26.2

Weight (kDa)

4.91

Isoelectric Point (pI)

21.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	43 - 227	1.2e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44080 AT1G57906 AT1G65735 AT1G65740 AT1G65760 AT1G65770 AT2G17690 AT2G26160 AT3G25750 AT3G25750 AT4G35733
fragaria_vesca	FvH4_1g10810 FvH4_1g10830 FvH4_1g10840 FvH4_1g10840 FvH4_1g10840 FvH4_1g10860 FvH4_1g10880
malus_domestica	MD02G1122000.v1.1 MD15G1235700.v1.1 MD15G1235900.v1.1
prunus_persica	Prupe.7G177000_v2.0.a1 Prupe.7G177100_v2.0.a1 Prupe.7G177200_v2.0.a1 Prupe.7G177300_v2.0.a1 Prupe.7G177400_v2.0.a1 Prupe.7G177400_v2.0.a1
pyrus_communis	pycom02g09500 pycom15g20990 pycom15g21000
rosa_chinensis	RchiOBHm_Chr1g0325601 RchiOBHm_Chr2g0098071 RchiOBHm_Chr2g0098081 RchiOBHm_Chr2g0098091 RchiOBHm_Chr2g0098121 RchiOBHm_Chr2g0098131 RchiOBHm_Chr2g0098151 RchiOBHm_Chr2g0134711 RchiOBHm_Chr3g0456141 RchiOBHm_Chr4g0394811 RchiOBHm_Chr4g0416561 RchiOBHm_Chr5g0014321
rosa_laevigata	RLG00000001178 RLG00000016753 RLG00000016754 RLG00000016755 RLG00000016756 RLG00000016757 RLG00000016758 RLG00000016760 RLG00000016761 RLG00000016762 RLG00000016763
rosa_multiflora	Rmu_co8307469.1_g000001 Rmu_sc0000427.1_g000002 Rmu_sc0002880.1_g000004 Rmu_sc0002880.1_g000007 Rmu_sc0009178.1_g000019 Rmu_sc0013919.1_g000002 Rmu_sc0013919.1_g000003 Rmu_sc0014278.1_g000001 Rmu_sc0031755.1_g000001 Rmu_sc0031755.1_g000002 Rmu_sc0039043.1_g000001 Rmu_sc0039432.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144260 Rroxscaffold_2G00144270 Rroxscaffold_2G00144290 Rroxscaffold_2G00144310 Rroxscaffold_2G00144320 Rroxscaffold_2G00144340 Rroxscaffold_3G00238070
rosa_rugosa	Rorug02G0069800 Rorug02G0069900 Rorug02G0070000 Rorug02G0070100 Rorug02G0070200 Rorug02G0070500 Rorug02G0070500 Rorug05G0053500 Rorug05G0482400 Rorug07G0244200
rosa_samantha	Rh1DG210300 Rh2AG117100 Rh2AG117200 Rh2AG117300 Rh2AG117500 Rh2AG117700 Rh2AG117800 Rh2AG563300 Rh2BG119900 Rh2BG120000 Rh2BG120200 Rh2BG120300 Rh2BG120400 Rh2BG120600 Rh2BG120700 Rh2BG377200 Rh2CG076100 Rh2CG076200 Rh2CG121600 Rh2CG121700 Rh2CG121900 Rh2CG122000 Rh2CG122100 Rh2CG122200 Rh2CG122300 Rh2DG121600 Rh2DG121700 Rh2DG122000 Rh2DG122100 Rh2DG122300 Rh3AG138900 Rh3BG074100 Rh3CG073500 Rh3DG298600 Rh4CG222800 Rh4CG222900 Rh5CG120400 Rh6BG018400 Rh6BG124600 Rh6CG123200 Rh6CG123300 Rh7AG342600 Rh7AG342700 Rh7BG352100 Rh7CG128700 Rh7CG360200 Rh7CG360300
rosa_wichuraiana	Rw2G009150 Rw2G009160 Rw2G009170 Rw2G009200 Rw4G016710 Rw5G035380 Rw6G043260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB7I	CCANNNNNTGG	1 cut(s)	535
AciI	CCGC	2 cut(s)	140, 632
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflII	CTTAAG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	5 cut(s)	92, 118, 418, 568, 608
AluBI	AGCT	6 cut(s)	70, 262, 357, 379, 428, 470
AluI	AGCT	6 cut(s)	70, 262, 357, 379, 428, 470
Alw26I	GTCTC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	526
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	526
BccI	CCATC	2 cut(s)	167, 634
BciVI	GTATCC	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	526
BpuEI	CTTGAG	1 cut(s)	640
Bsa29I	ATCGAT	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	526
Bse8I	GATNNNNATC	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	159, 462
BshVI	ATCGAT	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	103, 148, 220, 391
BspACI	CCGC	2 cut(s)	140, 632
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	673
BspTI	CTTAAG	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	4 cut(s)	103, 148, 220, 391
BstAFI	CTTAAG	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	106, 151, 223, 394
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	4 cut(s)	103, 148, 220, 391
BstNSI	RCATGY	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	271
BsuTUI	ATCGAT	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	3 cut(s)	366, 494, 674
CviJI	RGCY	9 cut(s)	70, 88, 95, 262, 357, 379, 428, 470, 671
CviKI_1	RGCY	9 cut(s)	70, 88, 95, 262, 357, 379, 428, 470, 671
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	105, 150, 222, 393
DpnII	GATC	4 cut(s)	103, 148, 220, 391
DraI	TTTAAA	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	233
FaeI	CATG	3 cut(s)	369, 497, 677
FaiI	YATR	9 cut(s)	15, 318, 367, 384, 459, 495, 576, 668, 675
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	3 cut(s)	365, 493, 673
FauI	CCCGC	1 cut(s)	133
FokI	GGATG	1 cut(s)	458
FspBI	CTAG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	369, 497, 677
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	2 cut(s)	59, 213
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	19, 526
Hpy188I	TCNGA	4 cut(s)	84, 225, 241, 477
Hpy188III	TCNNGA	2 cut(s)	415, 674
Hpy8I	GTNNAC	2 cut(s)	19, 526
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	365, 519
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	369, 497, 677
Kzo9I	GATC	4 cut(s)	103, 148, 220, 391
LmnI	GCTCC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	105, 150, 222, 393
MboI	GATC	4 cut(s)	103, 148, 220, 391
MboII	GAAGA	2 cut(s)	110, 190
MluCI	AATT	6 cut(s)	27, 42, 76, 233, 264, 590
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	78, 137, 483, 526, 580
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	30, 353, 402, 612
MslI	CAYNNNNRTG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	352
NdeII	GATC	4 cut(s)	103, 148, 220, 391
NlaIII	CATG	3 cut(s)	369, 497, 677
NspI	RCATGY	1 cut(s)	369
PagI	TCATGA	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	59, 213
PflMI	CCANNNNNTGG	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	526
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	30, 353, 402, 612
Sau3AI	GATC	4 cut(s)	103, 148, 220, 391
Sau96I	GGNCC	1 cut(s)	526
ScaI	AGTACT	1 cut(s)	680
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	352, 619
SmoI	CTYRAG	2 cut(s)	352, 619
Sse9I	AATT	6 cut(s)	27, 42, 76, 233, 264, 590
SsiI	CCGC	2 cut(s)	140, 632
SspMI	CTAG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	106, 151
TasI	AATT	6 cut(s)	27, 42, 76, 233, 264, 590
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	2 cut(s)	59, 213
Tru1I	TTAA	4 cut(s)	30, 353, 402, 612
Tru9I	TTAA	4 cut(s)	30, 353, 402, 612
TspDTI	ATGAA	4 cut(s)	17, 39, 351, 525
TspGWI	ACGGA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	535
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.