Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 24 |
| AarI | CACCTGC | 2 cut(s) | 726, 2027 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2420 |
| Acc36I | ACCTGC | 2 cut(s) | 726, 2027 |
| AccI | GTMKAC | 3 cut(s) | 99, 1201, 2155 |
| AccII | CGCG | 1 cut(s) | 1541 |
| AciI | CCGC | 5 cut(s) | 257, 630, 1050, 1319, 1640 |
| AclWI | GGATC | 4 cut(s) | 371, 1324, 1823, 1836 |
| AcoI | YGGCCR | 1 cut(s) | 1869 |
| AcuI | CTGAAG | 1 cut(s) | 2534 |
| AfaI | GTAC | 2 cut(s) | 306, 1632 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 228, 601, 724, 2006, 2387 |
| AflIII | ACRYGT | 1 cut(s) | 1596 |
| AgeI | ACCGGT | 1 cut(s) | 2280 |
| AjnI | CCWGG | 3 cut(s) | 1410, 1479, 1903 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1953, 1985, 2155, 2187 |
| Alw21I | GWGCWC | 1 cut(s) | 2097 |
| Alw26I | GTCTC | 9 cut(s) | 131, 142, 303, 366, 387, 1864, 1914, 2019, 2578 |
| AlwI | GGATC | 4 cut(s) | 371, 1324, 1823, 1836 |
| Ama87I | CYCGRG | 2 cut(s) | 323, 1861 |
| AoxI | GGCC | 3 cut(s) | 592, 1869, 2757 |
| ApeKI | GCWGC | 7 cut(s) | 30, 613, 1543, 1637, 1649, 2252, 2708 |
| AseI | ATTAAT | 1 cut(s) | 2486 |
| AsiGI | ACCGGT | 1 cut(s) | 2280 |
| AspLEI | GCGC | 1 cut(s) | 1543 |
| AspS9I | GGNCC | 5 cut(s) | 592, 1234, 2009, 2278, 2758 |
| AsuC2I | CCSGG | 3 cut(s) | 324, 325, 991 |
| AsuHPI | GGTGA | 9 cut(s) | 253, 461, 521, 536, 746, 2054, 2131, 2166, 2281 |
| AsuNHI | GCTAGC | 1 cut(s) | 2266 |
| AvaI | CYCGRG | 2 cut(s) | 323, 1861 |
| AvaII | GGWCC | 3 cut(s) | 1234, 2009, 2278 |
| AxyI | CCTNAGG | 1 cut(s) | 2293 |
| BalI | TGGCCA | 1 cut(s) | 1871 |
| BamHI | GGATCC | 1 cut(s) | 1828 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 626, 658 |
| BbsI | GAAGAC | 3 cut(s) | 224, 641, 862 |
| Bbv12I | GWGCWC | 1 cut(s) | 2097 |
| BbvI | GCAGC | 7 cut(s) | 42, 625, 1530, 1636, 1649, 2239, 2695 |
| BccI | CCATC | 8 cut(s) | 221, 263, 662, 872, 1205, 1346, 2045, 2539 |
| BciT130I | CCWGG | 3 cut(s) | 1412, 1481, 1905 |
| BciVI | GTATCC | 2 cut(s) | 1214, 1718 |
| BclI | TGATCA | 3 cut(s) | 1156, 1428, 1695 |
| BcnI | CCSGG | 3 cut(s) | 324, 325, 991 |
| BcoDI | GTCTC | 9 cut(s) | 131, 142, 303, 366, 387, 1864, 1914, 2019, 2578 |
| BfaI | CTAG | 4 cut(s) | 315, 1889, 2267, 2738 |
| BfmI | CTRYAG | 5 cut(s) | 676, 951, 2253, 2701, 2709 |
| BfuAI | ACCTGC | 2 cut(s) | 726, 2027 |
| BfuI | GTATCC | 2 cut(s) | 1214, 1718 |
| BglII | AGATCT | 1 cut(s) | 2015 |
| BisI | GCNGC | 8 cut(s) | 31, 614, 1319, 1544, 1638, 1650, 2253, 2709 |
| BlpI | GCTNAGC | 1 cut(s) | 1547 |
| BlsI | GCNGC | 8 cut(s) | 32, 615, 1320, 1545, 1639, 1651, 2254, 2710 |
| Bme1390I | CCNGG | 6 cut(s) | 324, 325, 991, 1412, 1481, 1905 |
| Bme18I | GGWCC | 3 cut(s) | 1234, 2009, 2278 |
| BmeT110I | CYCGRG | 2 cut(s) | 323, 1861 |
| BmgT120I | GGNCC | 5 cut(s) | 592, 1234, 2009, 2278, 2758 |
| BmiI | GGNNCC | 3 cut(s) | 1303, 1830, 2285 |
| BmrFI | CCNGG | 6 cut(s) | 324, 325, 991, 1412, 1481, 1905 |
| BmsI | GCATC | 4 cut(s) | 244, 965, 2356, 2365 |
| BmtI | GCTAGC | 1 cut(s) | 2270 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2396 |
| BpiI | GAAGAC | 3 cut(s) | 224, 641, 862 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2113, 2145, 2558, 2590 |
| BpmI | CTGGAG | 3 cut(s) | 285, 719, 1502 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1547 |
| BpuEI | CTTGAG | 3 cut(s) | 333, 415, 2111 |
| BpuMI | CCSGG | 3 cut(s) | 324, 325, 991 |
| Bsa29I | ATCGAT | 1 cut(s) | 1137 |
| BsaAI | YACGTR | 2 cut(s) | 1634, 2135 |
| BsaI | GGTCTC | 1 cut(s) | 2578 |
| BsaJI | CCNNGG | 4 cut(s) | 323, 1479, 1956, 2114 |
| BsaWI | WCCGGW | 2 cut(s) | 1835, 2280 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 228, 601, 724, 2006, 2387 |
| Bse118I | RCCGGY | 2 cut(s) | 2280, 2569 |
| Bse1I | ACTGG | 5 cut(s) | 302, 712, 960, 1222, 2155 |
| Bse21I | CCTNAGG | 1 cut(s) | 2293 |
| Bse3DI | GCAATG | 1 cut(s) | 1037 |
| BseBI | CCWGG | 3 cut(s) | 1412, 1481, 1905 |
| BseCI | ATCGAT | 1 cut(s) | 1137 |
| BseDI | CCNNGG | 4 cut(s) | 323, 1479, 1956, 2114 |
| BseGI | GGATG | 6 cut(s) | 118, 956, 999, 1251, 1347, 1888 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 228, 601, 724, 2006, 2387 |
| BseMI | GCAATG | 1 cut(s) | 1037 |
| BseNI | ACTGG | 5 cut(s) | 302, 712, 960, 1222, 2155 |
| BseRI | GAGGAG | 3 cut(s) | 267, 414, 1572 |
| BseXI | GCAGC | 7 cut(s) | 42, 625, 1530, 1636, 1649, 2239, 2695 |
| BseYI | CCCAGC | 1 cut(s) | 2231 |
| BsgI | GTGCAG | 3 cut(s) | 704, 1635, 1656 |
| Bsh1236I | CGCG | 1 cut(s) | 1541 |
| BshFI | GGCC | 3 cut(s) | 594, 1871, 2759 |
| BshTI | ACCGGT | 1 cut(s) | 2280 |
| BshVI | ATCGAT | 1 cut(s) | 1137 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2097 |
| BsiHKCI | CYCGRG | 2 cut(s) | 323, 1861 |
| BsiSI | CCGG | 5 cut(s) | 324, 990, 1836, 2281, 2570 |
| BslFI | GGGAC | 3 cut(s) | 1834, 2214, 2404 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 228, 601, 724, 2006, 2387 |
| BsmAI | GTCTC | 9 cut(s) | 131, 142, 303, 366, 387, 1864, 1914, 2019, 2578 |
| BsmBI | CGTCTC | 2 cut(s) | 387, 2019 |
| BsmFI | GGGAC | 3 cut(s) | 1834, 2214, 2404 |
| BsmI | GAATGC | 1 cut(s) | 615 |
| BsnI | GGCC | 3 cut(s) | 594, 1871, 2759 |
| Bso31I | GGTCTC | 1 cut(s) | 2578 |
| BsoBI | CYCGRG | 2 cut(s) | 323, 1861 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2097 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1547 |
| BspACI | CCGC | 5 cut(s) | 257, 630, 1050, 1319, 1640 |
| BspANI | GGCC | 3 cut(s) | 594, 1871, 2759 |
| BspDI | ATCGAT | 1 cut(s) | 1137 |
| BspFNI | CGCG | 1 cut(s) | 1541 |
| BspHI | TCATGA | 1 cut(s) | 1003 |
| BspLI | GGNNCC | 3 cut(s) | 1303, 1830, 2285 |
| BspMAI | CTGCAG | 2 cut(s) | 2257, 2713 |
| BspMI | ACCTGC | 2 cut(s) | 726, 2027 |
| BspOI | GCTAGC | 1 cut(s) | 2270 |
| BspPI | GGATC | 4 cut(s) | 371, 1324, 1823, 1836 |
| BspQI | GCTCTTC | 2 cut(s) | 69, 2187 |
| BspTNI | GGTCTC | 1 cut(s) | 2578 |
| BsrDI | GCAATG | 1 cut(s) | 1037 |
| BsrFI | RCCGGY | 2 cut(s) | 2280, 2569 |
| BsrI | ACTGG | 5 cut(s) | 302, 712, 960, 1222, 2155 |
| BssAI | RCCGGY | 2 cut(s) | 2280, 2569 |
| BssECI | CCNNGG | 4 cut(s) | 323, 1479, 1956, 2114 |
| BssNAI | GTATAC | 1 cut(s) | 1202 |
| BssT1I | CCWWGG | 1 cut(s) | 1956 |
| Bst1107I | GTATAC | 1 cut(s) | 1202 |
| Bst2UI | CCWGG | 3 cut(s) | 1412, 1481, 1905 |
| Bst6I | CTCTTC | 4 cut(s) | 69, 438, 896, 2187 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1024, 1039 |
| BstBAI | YACGTR | 2 cut(s) | 1634, 2135 |
| BstC8I | GCNNGC | 2 cut(s) | 2264, 2268 |
| BstDSI | CCRYGG | 1 cut(s) | 2114 |
| BstEII | GGTNACC | 1 cut(s) | 259 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 722, 2004 |
| BstF5I | GGATG | 6 cut(s) | 118, 956, 999, 1251, 1347, 1888 |
| BstFNI | CGCG | 1 cut(s) | 1541 |
| BstHHI | GCGC | 1 cut(s) | 1543 |
| BstMAI | GTCTC | 9 cut(s) | 131, 142, 303, 366, 387, 1864, 1914, 2019, 2578 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 279, 350, 1024, 1039, 1324, 1646, 2092, 2101, 2375 |
| BstNI | CCWGG | 3 cut(s) | 1412, 1481, 1905 |
| BstNSI | RCATGY | 1 cut(s) | 1031 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2396 |
| BstPI | GGTNACC | 1 cut(s) | 259 |
| BstSCI | CCNGG | 6 cut(s) | 322, 323, 989, 1410, 1479, 1903 |
| BstSFI | CTRYAG | 5 cut(s) | 676, 951, 2253, 2701, 2709 |
| BstUI | CGCG | 1 cut(s) | 1541 |
| BstV1I | GCAGC | 7 cut(s) | 42, 625, 1530, 1636, 1649, 2239, 2695 |
| BstV2I | GAAGAC | 3 cut(s) | 224, 641, 862 |
| BstX2I | RGATCY | 3 cut(s) | 376, 1828, 2015 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 16, 967, 1060 |
| BstYI | RGATCY | 3 cut(s) | 376, 1828, 2015 |
| BstZ17I | GTATAC | 1 cut(s) | 1202 |
| Bsu15I | ATCGAT | 1 cut(s) | 1137 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2293 |
| BsuI | GTATCC | 2 cut(s) | 1214, 1718 |
| BsuRI | GGCC | 3 cut(s) | 594, 1871, 2759 |
| BsuTUI | ATCGAT | 1 cut(s) | 1137 |
| BtgI | CCRYGG | 1 cut(s) | 2114 |
| BtgZI | GCGATG | 1 cut(s) | 2654 |
| BtsCI | GGATG | 6 cut(s) | 118, 956, 999, 1251, 1347, 1888 |
| BtsI | GCAGTG | 2 cut(s) | 582, 1147 |
| BtsIMutI | CAGTG | 9 cut(s) | 582, 705, 967, 1147, 1830, 2148, 2496, 2558, 2710 |
| BveI | ACCTGC | 2 cut(s) | 726, 2027 |
| Cac8I | GCNNGC | 2 cut(s) | 2264, 2268 |
| CciI | TCATGA | 1 cut(s) | 1003 |
| CfoI | GCGC | 1 cut(s) | 1543 |
| Cfr10I | RCCGGY | 2 cut(s) | 2280, 2569 |
| Cfr13I | GGNCC | 5 cut(s) | 592, 1234, 2009, 2278, 2758 |
| Cfr9I | CCCGGG | 1 cut(s) | 323 |
| ClaI | ATCGAT | 1 cut(s) | 1137 |
| Csp6I | GTAC | 2 cut(s) | 305, 1631 |
| CspAI | ACCGGT | 1 cut(s) | 2280 |
| CviQI | GTAC | 2 cut(s) | 305, 1631 |
| DraI | TTTAAA | 2 cut(s) | 1267, 2719 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2420 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2420 |
| EaeI | YGGCCR | 1 cut(s) | 1869 |
| Eam1104I | CTCTTC | 4 cut(s) | 69, 438, 896, 2187 |
| EarI | CTCTTC | 4 cut(s) | 69, 438, 896, 2187 |
| Eco130I | CCWWGG | 1 cut(s) | 1956 |
| Eco31I | GGTCTC | 1 cut(s) | 2578 |
| Eco47I | GGWCC | 3 cut(s) | 1234, 2009, 2278 |
| Eco57I | CTGAAG | 1 cut(s) | 2534 |
| Eco81I | CCTNAGG | 1 cut(s) | 2293 |
| Eco88I | CYCGRG | 2 cut(s) | 323, 1861 |
| Eco91I | GGTNACC | 1 cut(s) | 259 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 722, 2004 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1234, 2758 |
| EcoO65I | GGTNACC | 1 cut(s) | 259 |
| EcoRI | GAATTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 3 cut(s) | 1410, 1479, 1903 |
| EcoT14I | CCWWGG | 1 cut(s) | 1956 |
| EcoT22I | ATGCAT | 2 cut(s) | 1020, 1029 |
| ErhI | CCWWGG | 1 cut(s) | 1956 |
| Esp3I | CGTCTC | 2 cut(s) | 387, 2019 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1057, 1089, 1638, 1670, 2181, 2213 |
| FaqI | GGGAC | 3 cut(s) | 1834, 2214, 2404 |
| FauI | CCCGC | 3 cut(s) | 623, 1057, 1633 |
| FauNDI | CATATG | 2 cut(s) | 565, 1945 |
| FbaI | TGATCA | 3 cut(s) | 1156, 1428, 1695 |
| FblI | GTMKAC | 3 cut(s) | 99, 1201, 2155 |
| Fnu4HI | GCNGC | 8 cut(s) | 31, 614, 1319, 1544, 1638, 1650, 2253, 2709 |
| FokI | GGATG | 6 cut(s) | 105, 943, 1006, 1258, 1354, 1895 |
| Fsp4HI | GCNGC | 8 cut(s) | 31, 614, 1319, 1544, 1638, 1650, 2253, 2709 |
| FspBI | CTAG | 4 cut(s) | 315, 1889, 2267, 2738 |
| GlaI | GCGC | 1 cut(s) | 1542 |
| GluI | GCNGC | 8 cut(s) | 31, 614, 1319, 1544, 1638, 1650, 2253, 2709 |
| GsaI | CCCAGC | 1 cut(s) | 2235 |
| GsuI | CTGGAG | 3 cut(s) | 285, 719, 1502 |
| HaeIII | GGCC | 3 cut(s) | 594, 1871, 2759 |
| HapII | CCGG | 5 cut(s) | 324, 990, 1836, 2281, 2570 |
| HhaI | GCGC | 1 cut(s) | 1543 |
| Hin6I | GCGC | 1 cut(s) | 1541 |
| HinP1I | GCGC | 1 cut(s) | 1541 |
| HincII | GTYRAC | 3 cut(s) | 783, 1108, 2349 |
| HindII | GTYRAC | 3 cut(s) | 783, 1108, 2349 |
| HindIII | AAGCTT | 1 cut(s) | 1097 |
| HpaII | CCGG | 5 cut(s) | 324, 990, 1836, 2281, 2570 |
| HphI | GGTGA | 9 cut(s) | 253, 461, 521, 536, 746, 2054, 2131, 2166, 2281 |
| Hpy99I | CGWCG | 1 cut(s) | 855 |
| HpyAV | CCTTC | 5 cut(s) | 460, 538, 1053, 1403, 1431 |
| HpyCH4IV | ACGT | 7 cut(s) | 850, 1469, 1598, 1633, 2134, 2415, 2775 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 279, 350, 1024, 1039, 1324, 1646, 2092, 2101, 2375 |
| HpySE526I | ACGT | 7 cut(s) | 850, 1469, 1598, 1633, 2134, 2415, 2775 |
| HspAI | GCGC | 1 cut(s) | 1541 |
| Ksp22I | TGATCA | 3 cut(s) | 1156, 1428, 1695 |
| LguI | GCTCTTC | 2 cut(s) | 69, 2187 |
| LmnI | GCTCC | 1 cut(s) | 667 |
| Lsp1109I | GCAGC | 7 cut(s) | 42, 625, 1530, 1636, 1649, 2239, 2695 |
| LweI | GCATC | 4 cut(s) | 244, 965, 2356, 2365 |
| MaeI | CTAG | 4 cut(s) | 315, 1889, 2267, 2738 |
| MaeII | ACGT | 7 cut(s) | 850, 1469, 1598, 1633, 2134, 2415, 2775 |
| MaeIII | GTNAC | 6 cut(s) | 259, 791, 1286, 1489, 2042, 2776 |
| MflI | RGATCY | 3 cut(s) | 376, 1828, 2015 |
| MhlI | GDGCHC | 1 cut(s) | 2097 |
| MlsI | TGGCCA | 1 cut(s) | 1871 |
| MluNI | TGGCCA | 1 cut(s) | 1871 |
| MlyI | GAGTC | 3 cut(s) | 305, 631, 788 |
| MmeI | TCCRAC | 4 cut(s) | 69, 1581, 1951, 2166 |
| Mox20I | TGGCCA | 1 cut(s) | 1871 |
| Mph1103I | ATGCAT | 2 cut(s) | 1020, 1029 |
| MscI | TGGCCA | 1 cut(s) | 1871 |
| MslI | CAYNNNNRTG | 3 cut(s) | 14, 1152, 1209 |
| Msp20I | TGGCCA | 1 cut(s) | 1871 |
| MspA1I | CMGCKG | 1 cut(s) | 1640 |
| MspI | CCGG | 5 cut(s) | 324, 990, 1836, 2281, 2570 |
| MspR9I | CCNGG | 6 cut(s) | 324, 325, 991, 1412, 1481, 1905 |
| Mva1269I | GAATGC | 1 cut(s) | 615 |
| MvaI | CCWGG | 3 cut(s) | 1412, 1481, 1905 |
| MvnI | CGCG | 1 cut(s) | 1541 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 279, 350, 1024, 1039, 1324, 1646, 2092, 2101, 2375 |
| NciI | CCSGG | 3 cut(s) | 324, 325, 991 |
| NdeI | CATATG | 2 cut(s) | 565, 1945 |
| NheI | GCTAGC | 1 cut(s) | 2266 |
| NlaIV | GGNNCC | 3 cut(s) | 1303, 1830, 2285 |
| NmuCI | GTSAC | 5 cut(s) | 259, 791, 1489, 2042, 2776 |
| NsiI | ATGCAT | 2 cut(s) | 1020, 1029 |
| NspI | RCATGY | 1 cut(s) | 1031 |
| PagI | TCATGA | 1 cut(s) | 1003 |
| PaqCI | CACCTGC | 2 cut(s) | 726, 2027 |
| PciSI | GCTCTTC | 2 cut(s) | 69, 2187 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2421 |
| PctI | GAATGC | 1 cut(s) | 615 |
| PfeI | GAWTC | 8 cut(s) | 416, 620, 759, 973, 1802, 1900, 2538, 2660 |
| PfoI | TCCNGGA | 2 cut(s) | 989, 1903 |
| PinAI | ACCGGT | 1 cut(s) | 2280 |
| PkrI | GCNGC | 8 cut(s) | 32, 615, 1320, 1545, 1639, 1651, 2254, 2710 |
| PleI | GAGTC | 3 cut(s) | 304, 631, 787 |
| PpsI | GAGTC | 3 cut(s) | 304, 631, 787 |
| Ppu21I | YACGTR | 2 cut(s) | 1634, 2135 |
| PpuMI | RGGWCCY | 1 cut(s) | 1234 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2396 |
| PshBI | ATTAAT | 1 cut(s) | 2486 |
| PsiI | TTATAA | 1 cut(s) | 24 |
| Psp5II | RGGWCCY | 1 cut(s) | 1234 |
| Psp6I | CCWGG | 3 cut(s) | 1410, 1479, 1903 |
| PspEI | GGTNACC | 1 cut(s) | 259 |
| PspFI | CCCAGC | 1 cut(s) | 2231 |
| PspGI | CCWGG | 3 cut(s) | 1410, 1479, 1903 |
| PspN4I | GGNNCC | 3 cut(s) | 1303, 1830, 2285 |
| PspPI | GGNCC | 5 cut(s) | 592, 1234, 2009, 2278, 2758 |
| PspPPI | RGGWCCY | 1 cut(s) | 1234 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1976, 2008 |
| PstI | CTGCAG | 2 cut(s) | 2257, 2713 |
| PsuI | RGATCY | 3 cut(s) | 376, 1828, 2015 |
| RsaI | GTAC | 2 cut(s) | 306, 1632 |
| RsaNI | GTAC | 2 cut(s) | 305, 1631 |
| RseI | CAYNNNNRTG | 3 cut(s) | 14, 1152, 1209 |
| SapI | GCTCTTC | 2 cut(s) | 69, 2187 |
| SatI | GCNGC | 8 cut(s) | 31, 614, 1319, 1544, 1638, 1650, 2253, 2709 |
| Sau96I | GGNCC | 5 cut(s) | 592, 1234, 2009, 2278, 2758 |
| SchI | GAGTC | 3 cut(s) | 305, 631, 788 |
| ScrFI | CCNGG | 6 cut(s) | 324, 325, 991, 1412, 1481, 1905 |
| SduI | GDGCHC | 1 cut(s) | 2097 |
| SfaNI | GCATC | 4 cut(s) | 244, 965, 2356, 2365 |
| SfcI | CTRYAG | 5 cut(s) | 676, 951, 2253, 2701, 2709 |
| SinI | GGWCC | 3 cut(s) | 1234, 2009, 2278 |
| SmaI | CCCGGG | 1 cut(s) | 325 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 14, 1152, 1209 |
| SmlI | CTYRAG | 3 cut(s) | 348, 394, 2090 |
| SmoI | CTYRAG | 3 cut(s) | 348, 394, 2090 |
| SsiI | CCGC | 5 cut(s) | 257, 630, 1050, 1319, 1640 |
| SspI | AATATT | 2 cut(s) | 1261, 1294 |
| SspMI | CTAG | 4 cut(s) | 315, 1889, 2267, 2738 |
| StyD4I | CCNGG | 6 cut(s) | 322, 323, 989, 1410, 1479, 1903 |
| StyI | CCWWGG | 1 cut(s) | 1956 |
| TaiI | ACGT | 7 cut(s) | 853, 1472, 1601, 1636, 2137, 2418, 2778 |
| TaqI | TCGA | 7 cut(s) | 158, 225, 762, 1137, 1417, 1526, 2424 |
| TatI | WGTACW | 1 cut(s) | 304 |
| TauI | GCSGC | 1 cut(s) | 1321 |
| TfiI | GAWTC | 8 cut(s) | 416, 620, 759, 973, 1802, 1900, 2538, 2660 |
| TscAI | CASTG | 9 cut(s) | 582, 712, 967, 1154, 1830, 2155, 2503, 2558, 2710 |
| TseFI | GTSAC | 5 cut(s) | 259, 791, 1489, 2042, 2776 |
| TseI | GCWGC | 7 cut(s) | 30, 613, 1543, 1637, 1649, 2252, 2708 |
| Tsp45I | GTSAC | 5 cut(s) | 259, 791, 1489, 2042, 2776 |
| TspGWI | ACGGA | 2 cut(s) | 160, 369 |
| TspMI | CCCGGG | 1 cut(s) | 323 |
| TspRI | CASTG | 9 cut(s) | 582, 712, 967, 1154, 1830, 2155, 2503, 2558, 2710 |
| VpaK11BI | GGWCC | 3 cut(s) | 1234, 2009, 2278 |
| VspI | ATTAAT | 1 cut(s) | 2486 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 722, 2004 |
| XbaI | TCTAGA | 1 cut(s) | 2737 |
| XceI | RCATGY | 1 cut(s) | 1031 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2112 |
| XmaI | CCCGGG | 1 cut(s) | 323 |
| XmiI | GTMKAC | 3 cut(s) | 99, 1201, 2155 |
| XspI | CTAG | 4 cut(s) | 315, 1889, 2267, 2738 |
| Zsp2I | ATGCAT | 2 cut(s) | 1020, 1029 |