Rh2DG381700
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000505
Physical Location & Seq
Forward (+)
55030125 .. 55034222
4098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG381700.1

Sequence Viewer

Length: 438 bp
ATGAAGTTAAAAGATGTAATAGAAGTGGAGGCTATTAGGTGCTGGAGAAATTTGCCAATGGTAAACTTCGAGACCAAAGTTTGGCATGCTTTGGGTGAAAACAATGTTGGCAAGGCTGACCGACGATTGTATTCTGATTGGGATTCTCAAAGAACACACCACTACTATTGTTATGTTTCCGTGGATGGGAGTTGCAAGTTCAAGGGTCCCTTCCTAGACAAACCAAGAACTCTCCTACAGAAATGGTTAGAAGATGACAATGTTTTAGAGGTGAAATTTACCCAAGGGGAAGGTTCCAGTATTCTTTTTGATAATAATTATGGTACATATAGCAAGTTCTGCCTTTGCTCATGCAGTTCCGACTTTTTTACAAAGGCTATGCTATCAAAGGAACTTTTCTTGTCAATAAACTGGACCCAACAATGTTTGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

145

Amino Acids

17.02

Weight (kDa)

7.55

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 81
AcsI RAATTY 2 cut(s) 49, 275
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 81, 186
AgsI TTSAA 2 cut(s) 202, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
Alw26I GTCTC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 49, 275
AspS9I GGNCC 2 cut(s) 206, 414
AsuHPI GGTGA 2 cut(s) 107, 283
AvaII GGWCC 2 cut(s) 206, 414
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 206, 414
BmgT120I GGNCC 2 cut(s) 206, 414
BmiI GGNNCC 4 cut(s) 207, 208, 295, 416
BpmI CTGGAG 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 180, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 186
Bse1I ACTGG 2 cut(s) 297, 416
BseDI CCNNGG 2 cut(s) 180, 283
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 81, 186
BseNI ACTGG 2 cut(s) 297, 416
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 81, 186
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 65
BspLI GGNNCC 4 cut(s) 207, 208, 295, 416
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 2 cut(s) 297, 416
BssECI CCNNGG 2 cut(s) 180, 283
BssT1I CCWWGG 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 206, 414
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 2 cut(s) 86, 351
CviJI RGCY 3 cut(s) 32, 116, 377
CviKI_1 RGCY 3 cut(s) 32, 116, 377
CviQI GTAC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 206, 414
EcoO109I RGGNCCY 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 89, 354
FaiI YATR 7 cut(s) 87, 174, 321, 328, 330, 352, 380
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 85, 350
FokI GGATG 1 cut(s) 197
FspBI CTAG 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 64
Hin1II CATG 2 cut(s) 89, 354
HinfI GANTC 1 cut(s) 143
HphI GGTGA 2 cut(s) 107, 283
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 136, 361
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 220, 284
HpyCH4V TGCA 2 cut(s) 195, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 89, 354
KflI GGGWCCC 1 cut(s) 206
LpnPI CCDG 3 cut(s) 28, 310, 397
MaeI CTAG 1 cut(s) 215
MboII GAAGA 1 cut(s) 263
MluCI AATT 3 cut(s) 49, 275, 316
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 2 cut(s) 22, 262
MseI TTAA 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 339
NlaIII CATG 2 cut(s) 89, 354
NlaIV GGNNCC 4 cut(s) 207, 208, 295, 416
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
PspN4I GGNNCC 4 cut(s) 207, 208, 295, 416
PspPI GGNCC 2 cut(s) 206, 414
PspPPI RGGWCCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 8
Sau96I GGNCC 2 cut(s) 206, 414
SetI ASST 3 cut(s) 41, 273, 295
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 206, 414
SphI GCATGC 1 cut(s) 89
Sse9I AATT 3 cut(s) 49, 275, 316
SspMI CTAG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 1 cut(s) 69
TaqII GACCGA 1 cut(s) 135
TasI AATT 3 cut(s) 49, 275, 316
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 206, 414
XapI RAATTY 2 cut(s) 49, 275
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.