RLG00000013772
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000505
Physical Location & Seq
Reverse (-)
40639897 .. 40641106
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013772

Sequence Viewer

Length: 402 bp
ATGGAGTTATTGCGGCAGCAAATCTGTGAAGATAAAAAGCAAGCCTGGCCAAATGCTGACGCCATAACGCACCTCGCGACTCAGAGCGAGGAATCGGCAATGGATACCCTGAAGAAAATATCGACCGAAAAAAATATCAAAATCGCCCTCGGTCAATGTAGCTCGGGTTCTCCATCATCGTCAGGGACTTTGCTTCAGCCCTCTAGATTGATGGAAACGAAGAAGCAGAACTACATTAGCAACGATGGTTCTGATGCTTTTGCCGGTCGAGATTTTCTTCAAGGTCTCCATTACCGATTCCTCGCTCTGACTCGCGAGCTGCCTTATCGAGTCAACATCTGGCCAAGCTTGCTTTTTGTCCACACAGATTTGCCGCCGCAACCATTCCACAGACGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

134

Amino Acids

15.1

Weight (kDa)

8.98

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 77, 315
AciI CCGC 3 cut(s) 13, 374, 377
AcoI YGGCCR 2 cut(s) 47, 341
AcuI CTGAAG 2 cut(s) 131, 179
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 3 cut(s) 162, 319, 348
AluI AGCT 3 cut(s) 162, 319, 348
Alw26I GTCTC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 2 cut(s) 47, 341
ApeKI GCWGC 2 cut(s) 16, 319
AvaI CYCGRG 1 cut(s) 163
BalI TGGCCA 2 cut(s) 49, 343
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbvI GCAGC 2 cut(s) 28, 306
BccI CCATC 3 cut(s) 181, 205, 239
BciT130I CCWGG 1 cut(s) 46
BciVI GTATCC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 204
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 5 cut(s) 14, 17, 320, 374, 377
BlsI GCNGC 5 cut(s) 15, 18, 321, 375, 378
Bme1390I CCNGG 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 28, 306
Bsh1236I CGCG 2 cut(s) 77, 315
Bsh1285I CGRYCG 2 cut(s) 126, 268
BshFI GGCC 2 cut(s) 49, 343
BsiEI CGRYCG 2 cut(s) 126, 268
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 2 cut(s) 49, 343
Bso31I GGTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 163
Bsp68I TCGCGA 2 cut(s) 77, 315
BspACI CCGC 3 cut(s) 13, 374, 377
BspANI GGCC 2 cut(s) 49, 343
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 2 cut(s) 77, 315
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 42, 317, 350
BstDEI CTNAG 1 cut(s) 81
BstFNI CGCG 2 cut(s) 77, 315
BstMAI GTCTC 1 cut(s) 290
BstMCI CGRYCG 2 cut(s) 126, 268
BstMWI GCNNNNNNNGC 2 cut(s) 46, 349
BstNI CCWGG 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 44
BstUI CGCG 2 cut(s) 77, 315
BstV1I GCAGC 2 cut(s) 28, 306
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 49, 343
BtuMI TCGCGA 2 cut(s) 77, 315
Cac8I GCNNGC 3 cut(s) 42, 317, 350
Cfr10I RCCGGY 1 cut(s) 263
CseI GACGC 1 cut(s) 68
CviJI RGCY 7 cut(s) 44, 49, 162, 199, 319, 343, 348
CviKI_1 RGCY 7 cut(s) 44, 49, 162, 199, 319, 343, 348
DdeI CTNAG 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 47, 341
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 131, 179
Eco88I CYCGRG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 44
FaiI YATR 1 cut(s) 65
FaqI GGGAC 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 14, 17, 320, 374, 377
Fsp4HI GCNGC 5 cut(s) 14, 17, 320, 374, 377
FspBI CTAG 1 cut(s) 204
GluI GCNGC 5 cut(s) 14, 17, 320, 374, 377
HaeIII GGCC 2 cut(s) 49, 343
HapII CCGG 1 cut(s) 264
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 5 cut(s) 79, 92, 297, 310, 330
HpaII CCGG 1 cut(s) 264
Hpy166II GTNNAC 2 cut(s) 334, 361
Hpy188I TCNGA 3 cut(s) 84, 253, 309
Hpy188III TCNNGA 4 cut(s) 76, 204, 269, 314
Hpy8I GTNNAC 2 cut(s) 334, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 349
HpyF3I CTNAG 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 60
LpnPI CCDG 6 cut(s) 31, 58, 122, 168, 277, 325
Lsp1109I GCAGC 2 cut(s) 28, 306
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 204
MboII GAAGA 4 cut(s) 41, 124, 232, 269
MlsI TGGCCA 2 cut(s) 49, 343
MluNI TGGCCA 2 cut(s) 49, 343
MlyI GAGTC 3 cut(s) 73, 304, 339
MnlI CCTC 5 cut(s) 82, 83, 158, 211, 311
Mox20I TGGCCA 2 cut(s) 49, 343
MscI TGGCCA 2 cut(s) 49, 343
Msp20I TGGCCA 2 cut(s) 49, 343
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 2 cut(s) 77, 315
MwoI GCNNNNNNNGC 2 cut(s) 46, 349
NruI TCGCGA 2 cut(s) 77, 315
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 2 cut(s) 92, 297
PkrI GCNGC 5 cut(s) 15, 18, 321, 375, 378
PleI GAGTC 3 cut(s) 73, 304, 338
PpsI GAGTC 3 cut(s) 73, 304, 338
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PsrI GAACNNNNNNTAC 2 cut(s) 151, 183
RruI TCGCGA 2 cut(s) 77, 315
SatI GCNGC 5 cut(s) 14, 17, 320, 374, 377
SchI GAGTC 3 cut(s) 73, 304, 339
ScrFI CCNGG 1 cut(s) 46
SetI ASST 5 cut(s) 75, 164, 286, 321, 350
SfaNI GCATC 1 cut(s) 244
SsiI CCGC 3 cut(s) 13, 374, 377
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 44
TaqI TCGA 3 cut(s) 122, 268, 328
TaqII GACCGA 2 cut(s) 140, 140
TauI GCSGC 3 cut(s) 16, 376, 379
TfiI GAWTC 2 cut(s) 92, 297
TseI GCWGC 2 cut(s) 16, 319
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.