Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2655 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1067 |
| Acc36I | ACCTGC | 1 cut(s) | 3005 |
| Acc65I | GGTACC | 1 cut(s) | 1708 |
| AccB1I | GGYRCC | 1 cut(s) | 1708 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1747, 2605 |
| AccBSI | CCGCTC | 1 cut(s) | 36 |
| AccI | GTMKAC | 2 cut(s) | 13, 2055 |
| AciI | CCGC | 7 cut(s) | 36, 117, 246, 590, 946, 1466, 1882 |
| AclI | AACGTT | 1 cut(s) | 1520 |
| AclWI | GGATC | 4 cut(s) | 1397, 1586, 1973, 2448 |
| AcsI | RAATTY | 4 cut(s) | 527, 645, 697, 1718 |
| AcuI | CTGAAG | 2 cut(s) | 2042, 2361 |
| AcvI | CACGTG | 1 cut(s) | 1781 |
| AdeI | CACNNNGTG | 1 cut(s) | 1482 |
| AfaI | GTAC | 7 cut(s) | 156, 423, 1710, 2049, 2261, 2780, 3067 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 209, 227, 335, 1747, 2549, 2605, 3003 |
| AflIII | ACRYGT | 2 cut(s) | 724, 1778 |
| AgeI | ACCGGT | 1 cut(s) | 195 |
| AhlI | ACTAGT | 1 cut(s) | 2050 |
| AjiI | CACGTC | 1 cut(s) | 727 |
| AjnI | CCWGG | 2 cut(s) | 481, 2432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2115, 2147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 513, 545 |
| Alw26I | GTCTC | 3 cut(s) | 1253, 1895, 2236 |
| AlwI | GGATC | 4 cut(s) | 1397, 1586, 1973, 2448 |
| AoxI | GGCC | 5 cut(s) | 772, 1442, 2583, 2793, 2906 |
| ApaI | GGGCCC | 1 cut(s) | 776 |
| ApeKI | GCWGC | 3 cut(s) | 1052, 1784, 2414 |
| ApoI | RAATTY | 4 cut(s) | 527, 645, 697, 1718 |
| AseI | ATTAAT | 2 cut(s) | 1841, 2648 |
| AsiGI | ACCGGT | 1 cut(s) | 195 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 438, 930, 2355 |
| Asp718I | GGTACC | 1 cut(s) | 1708 |
| AspA2I | CCTAGG | 1 cut(s) | 1655 |
| AspS9I | GGNCC | 5 cut(s) | 462, 772, 773, 2171, 2584 |
| AsuC2I | CCSGG | 2 cut(s) | 67, 2067 |
| AsuNHI | GCTAGC | 1 cut(s) | 2428 |
| AvaII | GGWCC | 2 cut(s) | 462, 2171 |
| AvrII | CCTAGG | 1 cut(s) | 1655 |
| BaeGI | GKGCMC | 2 cut(s) | 67, 776 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3057, 3090 |
| BanI | GGYRCC | 1 cut(s) | 1708 |
| BanII | GRGCYC | 1 cut(s) | 776 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2277, 2309 |
| BbrPI | CACGTG | 1 cut(s) | 1781 |
| BbsI | GAAGAC | 2 cut(s) | 690, 2688 |
| BbvCI | CCTCAGC | 2 cut(s) | 466, 2244 |
| BbvI | GCAGC | 3 cut(s) | 1064, 1796, 2426 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 661, 695 |
| BciT130I | CCWGG | 2 cut(s) | 483, 2434 |
| BciVI | GTATCC | 2 cut(s) | 1280, 3085 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcnI | CCSGG | 2 cut(s) | 67, 2067 |
| BcoDI | GTCTC | 3 cut(s) | 1253, 1895, 2236 |
| BcuI | ACTAGT | 1 cut(s) | 2050 |
| BfmI | CTRYAG | 3 cut(s) | 471, 806, 2056 |
| BfuAI | ACCTGC | 1 cut(s) | 3005 |
| BfuI | GTATCC | 2 cut(s) | 1280, 3085 |
| BglII | AGATCT | 3 cut(s) | 580, 2344, 2353 |
| BisI | GCNGC | 6 cut(s) | 246, 591, 947, 1053, 1785, 2415 |
| BlnI | CCTAGG | 1 cut(s) | 1655 |
| BlsI | GCNGC | 6 cut(s) | 247, 592, 948, 1054, 1786, 2416 |
| Bme1390I | CCNGG | 4 cut(s) | 67, 483, 2067, 2434 |
| Bme18I | GGWCC | 2 cut(s) | 462, 2171 |
| BmgBI | CACGTC | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 5 cut(s) | 462, 772, 773, 2171, 2584 |
| BmiI | GGNNCC | 3 cut(s) | 774, 1710, 2586 |
| BmrFI | CCNGG | 4 cut(s) | 67, 483, 2067, 2434 |
| BmrI | ACTGGG | 2 cut(s) | 2236, 2307 |
| BmsI | GCATC | 7 cut(s) | 681, 1039, 1744, 2527, 2680, 2731, 2800 |
| BmtI | GCTAGC | 1 cut(s) | 2432 |
| BmuI | ACTGGG | 2 cut(s) | 2236, 2307 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2035 |
| BpiI | GAAGAC | 2 cut(s) | 690, 2688 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2780, 2812 |
| BpmI | CTGGAG | 2 cut(s) | 504, 582 |
| Bpu10I | CCTNAGC | 2 cut(s) | 466, 2244 |
| BpuEI | CTTGAG | 2 cut(s) | 1436, 2218 |
| BpuMI | CCSGG | 2 cut(s) | 67, 2067 |
| Bsa29I | ATCGAT | 2 cut(s) | 1146, 2913 |
| BsaAI | YACGTR | 1 cut(s) | 1781 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1318, 2217, 2670 |
| BsaI | GGTCTC | 1 cut(s) | 2236 |
| BsaJI | CCNNGG | 3 cut(s) | 1323, 1655, 2276 |
| BsaWI | WCCGGW | 2 cut(s) | 195, 1711 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 1633, 1663, 3083 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 209, 227, 335, 1747, 2549, 2605, 3003 |
| Bse118I | RCCGGY | 1 cut(s) | 195 |
| Bse1I | ACTGG | 4 cut(s) | 1315, 1445, 2231, 2313 |
| Bse3DI | GCAATG | 1 cut(s) | 2181 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1318, 2217, 2670 |
| BseBI | CCWGG | 2 cut(s) | 483, 2434 |
| BseCI | ATCGAT | 2 cut(s) | 1146, 2913 |
| BseDI | CCNNGG | 3 cut(s) | 1323, 1655, 2276 |
| BseGI | GGATG | 6 cut(s) | 757, 1543, 1568, 2032, 2442, 2671 |
| BseJI | GATNNNNATC | 3 cut(s) | 1318, 2217, 2670 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 209, 227, 335, 1747, 2549, 2605, 3003 |
| BseMI | GCAATG | 1 cut(s) | 2181 |
| BseMII | CTCAG | 4 cut(s) | 480, 1791, 1908, 2258 |
| BseNI | ACTGG | 4 cut(s) | 1315, 1445, 2231, 2313 |
| BseRI | GAGGAG | 5 cut(s) | 267, 1001, 1641, 2909, 2983 |
| BseSI | GKGCMC | 2 cut(s) | 67, 776 |
| BseXI | GCAGC | 3 cut(s) | 1064, 1796, 2426 |
| BsgI | GTGCAG | 3 cut(s) | 5, 884, 1803 |
| BshFI | GGCC | 5 cut(s) | 774, 1444, 2585, 2795, 2908 |
| BshNI | GGYRCC | 1 cut(s) | 1708 |
| BshTI | ACCGGT | 1 cut(s) | 195 |
| BshVI | ATCGAT | 2 cut(s) | 1146, 2913 |
| BsiSI | CCGG | 4 cut(s) | 67, 196, 1712, 2066 |
| BslFI | GGGAC | 5 cut(s) | 1407, 1984, 2002, 2552, 2720 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 209, 227, 335, 1747, 2549, 2605, 3003 |
| BsmAI | GTCTC | 3 cut(s) | 1253, 1895, 2236 |
| BsmBI | CGTCTC | 1 cut(s) | 1895 |
| BsmFI | GGGAC | 5 cut(s) | 1407, 1984, 2002, 2552, 2720 |
| BsnI | GGCC | 5 cut(s) | 774, 1444, 2585, 2795, 2908 |
| Bso31I | GGTCTC | 1 cut(s) | 2236 |
| Bsp120I | GGGCCC | 1 cut(s) | 772 |
| Bsp1286I | GDGCHC | 2 cut(s) | 67, 776 |
| Bsp1407I | TGTACA | 2 cut(s) | 154, 421 |
| BspACI | CCGC | 7 cut(s) | 36, 117, 246, 590, 946, 1466, 1882 |
| BspANI | GGCC | 5 cut(s) | 774, 1444, 2585, 2795, 2908 |
| BspCNI | CTCAG | 4 cut(s) | 479, 1792, 1907, 2257 |
| BspDI | ATCGAT | 2 cut(s) | 1146, 2913 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 3 cut(s) | 774, 1710, 2586 |
| BspMI | ACCTGC | 1 cut(s) | 3005 |
| BspOI | GCTAGC | 1 cut(s) | 2432 |
| BspPI | GGATC | 4 cut(s) | 1397, 1586, 1973, 2448 |
| BspT107I | GGYRCC | 1 cut(s) | 1708 |
| BspTNI | GGTCTC | 1 cut(s) | 2236 |
| BsrBI | CCGCTC | 1 cut(s) | 36 |
| BsrDI | GCAATG | 1 cut(s) | 2181 |
| BsrFI | RCCGGY | 1 cut(s) | 195 |
| BsrGI | TGTACA | 2 cut(s) | 154, 421 |
| BsrI | ACTGG | 4 cut(s) | 1315, 1445, 2231, 2313 |
| BssAI | RCCGGY | 1 cut(s) | 195 |
| BssECI | CCNNGG | 3 cut(s) | 1323, 1655, 2276 |
| BssT1I | CCWWGG | 2 cut(s) | 1655, 2276 |
| Bst2UI | CCWGG | 2 cut(s) | 483, 2434 |
| Bst4CI | ACNGT | 8 cut(s) | 689, 1247, 1482, 1922, 2037, 2150, 2687, 2778 |
| Bst6I | CTCTTC | 1 cut(s) | 852 |
| BstAUI | TGTACA | 2 cut(s) | 154, 421 |
| BstBAI | YACGTR | 1 cut(s) | 1781 |
| BstC8I | GCNNGC | 6 cut(s) | 250, 886, 1125, 2430, 2746, 3032 |
| BstDEI | CTNAG | 7 cut(s) | 466, 505, 1451, 1800, 1894, 1925, 2244 |
| BstEII | GGTNACC | 1 cut(s) | 198 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 333 |
| BstF5I | GGATG | 6 cut(s) | 757, 1543, 1568, 2032, 2442, 2671 |
| BstMAI | GTCTC | 3 cut(s) | 1253, 1895, 2236 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 2537, 3020 |
| BstNI | CCWGG | 2 cut(s) | 483, 2434 |
| BstNSI | RCATGY | 1 cut(s) | 1127 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2035 |
| BstPI | GGTNACC | 1 cut(s) | 198 |
| BstSCI | CCNGG | 4 cut(s) | 65, 481, 2065, 2432 |
| BstSFI | CTRYAG | 3 cut(s) | 471, 806, 2056 |
| BstSLI | GKGCMC | 2 cut(s) | 67, 776 |
| BstV1I | GCAGC | 3 cut(s) | 1064, 1796, 2426 |
| BstV2I | GAAGAC | 2 cut(s) | 690, 2688 |
| BstX2I | RGATCY | 4 cut(s) | 580, 1591, 2344, 2353 |
| BstYI | RGATCY | 4 cut(s) | 580, 1591, 2344, 2353 |
| Bsu15I | ATCGAT | 2 cut(s) | 1146, 2913 |
| BsuI | GTATCC | 2 cut(s) | 1280, 3085 |
| BsuRI | GGCC | 5 cut(s) | 774, 1444, 2585, 2795, 2908 |
| BsuTUI | ATCGAT | 2 cut(s) | 1146, 2913 |
| BtrI | CACGTC | 1 cut(s) | 727 |
| BtsCI | GGATG | 6 cut(s) | 757, 1543, 1568, 2032, 2442, 2671 |
| BtsI | GCAGTG | 1 cut(s) | 1510 |
| BtsIMutI | CAGTG | 2 cut(s) | 1487, 1510 |
| BveI | ACCTGC | 1 cut(s) | 3005 |
| Cac8I | GCNNGC | 6 cut(s) | 250, 886, 1125, 2430, 2746, 3032 |
| CciI | TCATGA | 1 cut(s) | 430 |
| Cfr10I | RCCGGY | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 5 cut(s) | 462, 772, 773, 2171, 2584 |
| ClaI | ATCGAT | 2 cut(s) | 1146, 2913 |
| CseI | GACGC | 1 cut(s) | 726 |
| Csp6I | GTAC | 7 cut(s) | 155, 422, 1709, 2048, 2260, 2779, 3066 |
| CspAI | ACCGGT | 1 cut(s) | 195 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 958, 993 |
| CviQI | GTAC | 7 cut(s) | 155, 422, 1709, 2048, 2260, 2779, 3066 |
| DdeI | CTNAG | 7 cut(s) | 466, 505, 1451, 1800, 1894, 1925, 2244 |
| DraI | TTTAAA | 1 cut(s) | 1995 |
| DraIII | CACNNNGTG | 1 cut(s) | 1482 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1067 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1067 |
| Eam1104I | CTCTTC | 1 cut(s) | 852 |
| EarI | CTCTTC | 1 cut(s) | 852 |
| Eco130I | CCWWGG | 2 cut(s) | 1655, 2276 |
| Eco24I | GRGCYC | 1 cut(s) | 776 |
| Eco31I | GGTCTC | 1 cut(s) | 2236 |
| Eco32I | GATATC | 2 cut(s) | 953, 2063 |
| Eco47I | GGWCC | 2 cut(s) | 462, 2171 |
| Eco57I | CTGAAG | 2 cut(s) | 2042, 2361 |
| Eco72I | CACGTG | 1 cut(s) | 1781 |
| Eco91I | GGTNACC | 1 cut(s) | 198 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 333 |
| EcoO109I | RGGNCCY | 3 cut(s) | 462, 772, 2584 |
| EcoO65I | GGTNACC | 1 cut(s) | 198 |
| EcoRI | GAATTC | 1 cut(s) | 527 |
| EcoRII | CCWGG | 2 cut(s) | 481, 2432 |
| EcoRV | GATATC | 2 cut(s) | 953, 2063 |
| EcoT14I | CCWWGG | 2 cut(s) | 1655, 2276 |
| EcoT22I | ATGCAT | 3 cut(s) | 674, 1125, 1701 |
| EcoT38I | GRGCYC | 1 cut(s) | 776 |
| ErhI | CCWWGG | 2 cut(s) | 1655, 2276 |
| Esp3I | CGTCTC | 1 cut(s) | 1895 |
| FaqI | GGGAC | 5 cut(s) | 1407, 1984, 2002, 2552, 2720 |
| FauNDI | CATATG | 1 cut(s) | 349 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FblI | GTMKAC | 2 cut(s) | 13, 2055 |
| Fnu4HI | GCNGC | 6 cut(s) | 246, 591, 947, 1053, 1785, 2415 |
| FokI | GGATG | 6 cut(s) | 764, 1530, 1555, 2039, 2449, 2678 |
| FriOI | GRGCYC | 1 cut(s) | 776 |
| Fsp4HI | GCNGC | 6 cut(s) | 246, 591, 947, 1053, 1785, 2415 |
| GluI | GCNGC | 6 cut(s) | 246, 591, 947, 1053, 1785, 2415 |
| GsuI | CTGGAG | 2 cut(s) | 504, 582 |
| HaeIII | GGCC | 5 cut(s) | 774, 1444, 2585, 2795, 2908 |
| HapII | CCGG | 4 cut(s) | 67, 196, 1712, 2066 |
| HgaI | GACGC | 1 cut(s) | 726 |
| HincII | GTYRAC | 1 cut(s) | 745 |
| HindII | GTYRAC | 1 cut(s) | 745 |
| HindIII | AAGCTT | 2 cut(s) | 1743, 2286 |
| HpaII | CCGG | 4 cut(s) | 67, 196, 1712, 2066 |
| Hpy166II | GTNNAC | 8 cut(s) | 14, 521, 536, 745, 2056, 2072, 2174, 2273 |
| Hpy188I | TCNGA | 7 cut(s) | 324, 396, 546, 1048, 1324, 1548, 2329 |
| Hpy8I | GTNNAC | 8 cut(s) | 14, 521, 536, 745, 2056, 2072, 2174, 2273 |
| Hpy99I | CGWCG | 1 cut(s) | 693 |
| HpyCH4III | ACNGT | 8 cut(s) | 689, 1247, 1482, 1922, 2037, 2150, 2687, 2778 |
| HpyCH4IV | ACGT | 7 cut(s) | 726, 741, 747, 1520, 1780, 2176, 2453 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 2537, 3020 |
| HpyF3I | CTNAG | 7 cut(s) | 466, 505, 1451, 1800, 1894, 1925, 2244 |
| HpySE526I | ACGT | 7 cut(s) | 726, 741, 747, 1520, 1780, 2176, 2453 |
| KpnI | GGTACC | 1 cut(s) | 1712 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| LmnI | GCTCC | 3 cut(s) | 154, 280, 1545 |
| Lsp1109I | GCAGC | 3 cut(s) | 1064, 1796, 2426 |
| LweI | GCATC | 7 cut(s) | 681, 1039, 1744, 2527, 2680, 2731, 2800 |
| MaeII | ACGT | 7 cut(s) | 726, 741, 747, 1520, 1780, 2176, 2453 |
| MaeIII | GTNAC | 7 cut(s) | 121, 198, 737, 758, 1025, 1039, 2465 |
| MbiI | CCGCTC | 1 cut(s) | 36 |
| MfeI | CAATTG | 1 cut(s) | 83 |
| MflI | RGATCY | 4 cut(s) | 580, 1591, 2344, 2353 |
| MhlI | GDGCHC | 2 cut(s) | 67, 776 |
| MlyI | GAGTC | 1 cut(s) | 2329 |
| MmeI | TCCRAC | 4 cut(s) | 58, 1619, 2006, 2113 |
| Mph1103I | ATGCAT | 3 cut(s) | 674, 1125, 1701 |
| MroXI | GAANNNNTTC | 3 cut(s) | 438, 930, 2355 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1278, 1302 |
| MspA1I | CMGCKG | 3 cut(s) | 74, 1976, 2417 |
| MspI | CCGG | 4 cut(s) | 67, 196, 1712, 2066 |
| MspR9I | CCNGG | 4 cut(s) | 67, 483, 2067, 2434 |
| MunI | CAATTG | 1 cut(s) | 83 |
| MvaI | CCWGG | 2 cut(s) | 483, 2434 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 2537, 3020 |
| NciI | CCSGG | 2 cut(s) | 67, 2067 |
| NdeI | CATATG | 1 cut(s) | 349 |
| NheI | GCTAGC | 1 cut(s) | 2428 |
| NlaIV | GGNNCC | 3 cut(s) | 774, 1710, 2586 |
| NmuCI | GTSAC | 4 cut(s) | 121, 198, 1039, 2465 |
| NsiI | ATGCAT | 3 cut(s) | 674, 1125, 1701 |
| NspI | RCATGY | 1 cut(s) | 1127 |
| PaeI | GCATGC | 1 cut(s) | 1127 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1670 |
| PdmI | GAANNNNTTC | 3 cut(s) | 438, 930, 2355 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1747, 2605 |
| PinAI | ACCGGT | 1 cut(s) | 195 |
| PkrI | GCNGC | 6 cut(s) | 247, 592, 948, 1054, 1786, 2416 |
| PleI | GAGTC | 1 cut(s) | 2328 |
| PmaCI | CACGTG | 1 cut(s) | 1781 |
| PmlI | CACGTG | 1 cut(s) | 1781 |
| PpsI | GAGTC | 1 cut(s) | 2328 |
| Ppu21I | YACGTR | 1 cut(s) | 1781 |
| PpuMI | RGGWCCY | 1 cut(s) | 462 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2035 |
| PshBI | ATTAAT | 2 cut(s) | 1841, 2648 |
| PsiI | TTATAA | 1 cut(s) | 2655 |
| Psp1406I | AACGTT | 1 cut(s) | 1520 |
| Psp5II | RGGWCCY | 1 cut(s) | 462 |
| Psp6I | CCWGG | 2 cut(s) | 481, 2432 |
| PspCI | CACGTG | 1 cut(s) | 1781 |
| PspEI | GGTNACC | 1 cut(s) | 198 |
| PspGI | CCWGG | 2 cut(s) | 481, 2432 |
| PspN4I | GGNNCC | 3 cut(s) | 774, 1710, 2586 |
| PspOMI | GGGCCC | 1 cut(s) | 772 |
| PspPI | GGNCC | 5 cut(s) | 462, 772, 773, 2171, 2584 |
| PspPPI | RGGWCCY | 1 cut(s) | 462 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2606, 2638 |
| PsuI | RGATCY | 4 cut(s) | 580, 1591, 2344, 2353 |
| PvuII | CAGCTG | 3 cut(s) | 74, 1976, 2417 |
| RsaI | GTAC | 7 cut(s) | 156, 423, 1710, 2049, 2261, 2780, 3067 |
| RsaNI | GTAC | 7 cut(s) | 155, 422, 1709, 2048, 2260, 2779, 3066 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1278, 1302 |
| SatI | GCNGC | 6 cut(s) | 246, 591, 947, 1053, 1785, 2415 |
| Sau96I | GGNCC | 5 cut(s) | 462, 772, 773, 2171, 2584 |
| SchI | GAGTC | 1 cut(s) | 2329 |
| ScrFI | CCNGG | 4 cut(s) | 67, 483, 2067, 2434 |
| SduI | GDGCHC | 2 cut(s) | 67, 776 |
| SfaNI | GCATC | 7 cut(s) | 681, 1039, 1744, 2527, 2680, 2731, 2800 |
| SfcI | CTRYAG | 3 cut(s) | 471, 806, 2056 |
| SinI | GGWCC | 2 cut(s) | 462, 2171 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1278, 1302 |
| SmlI | CTYRAG | 2 cut(s) | 1415, 2233 |
| SmoI | CTYRAG | 2 cut(s) | 1415, 2233 |
| SpeI | ACTAGT | 1 cut(s) | 2050 |
| SphI | GCATGC | 1 cut(s) | 1127 |
| SsiI | CCGC | 7 cut(s) | 36, 117, 246, 590, 946, 1466, 1882 |
| SspI | AATATT | 1 cut(s) | 617 |
| StyD4I | CCNGG | 4 cut(s) | 65, 481, 2065, 2432 |
| StyI | CCWWGG | 2 cut(s) | 1655, 2276 |
| TaaI | ACNGT | 8 cut(s) | 689, 1247, 1482, 1922, 2037, 2150, 2687, 2778 |
| TaiI | ACGT | 7 cut(s) | 729, 744, 750, 1523, 1783, 2179, 2456 |
| TatI | WGTACW | 3 cut(s) | 154, 421, 2778 |
| TauI | GCSGC | 3 cut(s) | 248, 593, 949 |
| TscAI | CASTG | 2 cut(s) | 1487, 1510 |
| TseFI | GTSAC | 4 cut(s) | 121, 198, 1039, 2465 |
| TseI | GCWGC | 3 cut(s) | 1052, 1784, 2414 |
| Tsp45I | GTSAC | 4 cut(s) | 121, 198, 1039, 2465 |
| TspGWI | ACGGA | 2 cut(s) | 521, 2626 |
| TspRI | CASTG | 2 cut(s) | 1487, 1510 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1747, 2605 |
| VpaK11BI | GGWCC | 2 cut(s) | 462, 2171 |
| VspI | ATTAAT | 2 cut(s) | 1841, 2648 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 333 |
| XapI | RAATTY | 4 cut(s) | 527, 645, 697, 1718 |
| XbaI | TCTAGA | 3 cut(s) | 1864, 2347, 2533 |
| XceI | RCATGY | 1 cut(s) | 1127 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2274 |
| XmaJI | CCTAGG | 1 cut(s) | 1655 |
| XmiI | GTMKAC | 2 cut(s) | 13, 2055 |
| XmnI | GAANNNNTTC | 3 cut(s) | 438, 930, 2355 |
| Zsp2I | ATGCAT | 3 cut(s) | 674, 1125, 1701 |