Rmu_co8374041.1_g000001
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8374041.1
OG0000505
Physical Location & Seq
Reverse (-)
1 .. 1122
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8374041.1_g000001.1.cds

Sequence Viewer

Length: 404 bp
atgttgtgtgtttgctttattggttgtaggaaggatggacaactgtcggggaaggtactagtctacagatatccgggtttacactttggggatattcatgttctaaaggcgacctatgtgaaggagttagaatcttttgttggaaatgccaaatacggtatattcttctcttgcaaaggtccacgttccattgctgatgaaatgggtggtggagattttgatggtgatctatactgggtctcaagaaaccctcagctattggagtggtacaaaccaagtgaaccttggattgaagcttcaataccaacccaaaaagttcccagtaggagtccatctgactattcgcctgaagatctagaagatcttctgtttagatcattcttgacaacgaggtttgaaccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

134

Amino Acids

15.25

Weight (kDa)

5.36

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 57, 269
AgsI TTSAA 3 cut(s) 293, 300, 398
AhlI ACTAGT 1 cut(s) 58
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 2 cut(s) 256, 296
AluI AGCT 2 cut(s) 256, 296
Alw26I GTCTC 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbvCI CCTCAGC 1 cut(s) 252
BccI CCATC 3 cut(s) 29, 215, 340
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 356
BfmI CTRYAG 1 cut(s) 64
BglII AGATCT 2 cut(s) 352, 361
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 2 cut(s) 244, 315
BmuI ACTGGG 2 cut(s) 244, 315
BoxI GACNNNNGTC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 239, 321
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 225
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 239, 321
BsiSI CCGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 244
Bsp143I GATC 4 cut(s) 226, 352, 361, 374
BspCNI CTCAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 2 cut(s) 239, 321
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 4 cut(s) 226, 352, 361, 374
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 45, 158
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 4 cut(s) 229, 355, 364, 377
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 4 cut(s) 226, 352, 361, 374
BstPAI GACNNNNGTC 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 352, 361
BstYI RGATCY 2 cut(s) 352, 361
BtsCI GGATG 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 56, 268
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 256, 296
CviKI_1 RGCY 2 cut(s) 256, 296
CviQI GTAC 2 cut(s) 56, 268
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 228, 354, 363, 376
DpnII GATC 4 cut(s) 226, 352, 361, 374
Eco130I CCWWGG 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 99, 117, 161, 232
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 63
FokI GGATG 1 cut(s) 47
FspBI CTAG 2 cut(s) 59, 356
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 2 cut(s) 131, 328
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 4 cut(s) 64, 80, 182, 281
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 243, 356, 382
Hpy8I GTNNAC 4 cut(s) 64, 80, 182, 281
HpyAV CCTTC 3 cut(s) 25, 46, 115
HpyCH4III ACNGT 2 cut(s) 45, 158
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 4 cut(s) 226, 352, 361, 374
LpnPI CCDG 4 cut(s) 87, 220, 334, 360
MaeI CTAG 2 cut(s) 59, 356
MaeII ACGT 1 cut(s) 184
MalI GATC 4 cut(s) 228, 354, 363, 376
MboI GATC 4 cut(s) 226, 352, 361, 374
MboII GAAGA 4 cut(s) 157, 356, 362, 371
MflI RGATCY 2 cut(s) 352, 361
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 261, 384
MroXI GAANNNNTTC 1 cut(s) 363
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 75
NciI CCSGG 1 cut(s) 75
NdeII GATC 4 cut(s) 226, 352, 361, 374
NlaIII CATG 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 131
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PshAI GACNNNNGTC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 352, 361
RsaI GTAC 2 cut(s) 57, 269
RsaNI GTAC 2 cut(s) 56, 268
Sau3AI GATC 4 cut(s) 226, 352, 361, 374
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 75
SetI ASST 8 cut(s) 57, 116, 181, 187, 258, 286, 298, 395
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
SpeI ACTAGT 1 cut(s) 58
SspMI CTAG 2 cut(s) 59, 356
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 45, 158
TaiI ACGT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 86, 213
VpaK11BI GGWCC 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 2 cut(s) 59, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.