Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1742 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 460 |
| AciI | CCGC | 2 cut(s) | 371, 1533 |
| AclWI | GGATC | 3 cut(s) | 302, 710, 1185 |
| AcoI | YGGCCR | 1 cut(s) | 1530 |
| AcuI | CTGAAG | 3 cut(s) | 384, 779, 1098 |
| AcvI | CACGTG | 1 cut(s) | 494 |
| AdeI | CACNNNGTG | 1 cut(s) | 387 |
| AfaI | GTAC | 7 cut(s) | 525, 786, 794, 998, 1517, 1613, 1804 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 460, 1286, 1740 |
| AflIII | ACRYGT | 1 cut(s) | 491 |
| AgsI | TTSAA | 7 cut(s) | 131, 1022, 1029, 1127, 1318, 1368, 1825 |
| AhlI | ACTAGT | 1 cut(s) | 787 |
| AjnI | CCWGG | 2 cut(s) | 349, 1169 |
| Alw26I | GTCTC | 2 cut(s) | 632, 973 |
| AlwI | GGATC | 3 cut(s) | 302, 710, 1185 |
| AoxI | GGCC | 3 cut(s) | 347, 1530, 1643 |
| ApeKI | GCWGC | 4 cut(s) | 497, 1139, 1151, 1535 |
| AseI | ATTAAT | 1 cut(s) | 578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1092 |
| AspS9I | GGNCC | 2 cut(s) | 908, 1321 |
| AsuC2I | CCSGG | 1 cut(s) | 804 |
| AsuHPI | GGTGA | 3 cut(s) | 524, 560, 965 |
| AsuNHI | GCTAGC | 1 cut(s) | 1165 |
| AvaII | GGWCC | 2 cut(s) | 908, 1321 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 776, 809, 1794, 1827 |
| BbrPI | CACGTG | 1 cut(s) | 494 |
| BbsI | GAAGAC | 1 cut(s) | 1425 |
| BbvCI | CCTCAGC | 1 cut(s) | 981 |
| BbvI | GCAGC | 4 cut(s) | 509, 1126, 1163, 1522 |
| BccI | CCATC | 7 cut(s) | 203, 697, 758, 944, 1069, 1168, 1522 |
| BciT130I | CCWGG | 2 cut(s) | 351, 1171 |
| BciVI | GTATCC | 2 cut(s) | 185, 1822 |
| BcnI | CCSGG | 1 cut(s) | 804 |
| BcoDI | GTCTC | 2 cut(s) | 632, 973 |
| BcuI | ACTAGT | 1 cut(s) | 787 |
| BfaI | CTAG | 8 cut(s) | 45, 66, 602, 788, 1085, 1119, 1166, 1271 |
| BfuAI | ACCTGC | 1 cut(s) | 1742 |
| BfuI | GTATCC | 2 cut(s) | 185, 1822 |
| BglII | AGATCT | 2 cut(s) | 1081, 1090 |
| BisI | GCNGC | 5 cut(s) | 498, 1140, 1152, 1533, 1536 |
| BlsI | GCNGC | 5 cut(s) | 499, 1141, 1153, 1534, 1537 |
| BmcAI | AGTACT | 1 cut(s) | 525 |
| Bme1390I | CCNGG | 3 cut(s) | 351, 804, 1171 |
| Bme18I | GGWCC | 2 cut(s) | 908, 1321 |
| BmgT120I | GGNCC | 2 cut(s) | 908, 1321 |
| BmiI | GGNNCC | 1 cut(s) | 1323 |
| BmrFI | CCNGG | 3 cut(s) | 351, 804, 1171 |
| BmrI | ACTGGG | 2 cut(s) | 973, 1044 |
| BmsI | GCATC | 4 cut(s) | 457, 1264, 1417, 1468 |
| BmtI | GCTAGC | 1 cut(s) | 1169 |
| BmuI | ACTGGG | 2 cut(s) | 973, 1044 |
| BoxI | GACNNNNGTC | 1 cut(s) | 772 |
| BpiI | GAAGAC | 1 cut(s) | 1425 |
| Bpu10I | CCTNAGC | 1 cut(s) | 981 |
| BpuEI | CTTGAG | 2 cut(s) | 341, 955 |
| BpuMI | CCSGG | 1 cut(s) | 804 |
| Bsa29I | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BsaAI | YACGTR | 1 cut(s) | 494 |
| BsaBI | GATNNNNATC | 3 cut(s) | 223, 954, 1407 |
| BsaI | GGTCTC | 1 cut(s) | 973 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 1013 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 845, 875, 1820 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 460, 1286, 1740 |
| Bse1I | ACTGG | 3 cut(s) | 220, 968, 1050 |
| Bse3DI | GCAATG | 1 cut(s) | 918 |
| Bse8I | GATNNNNATC | 3 cut(s) | 223, 954, 1407 |
| BseBI | CCWGG | 2 cut(s) | 351, 1171 |
| BseCI | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BseDI | CCNNGG | 2 cut(s) | 228, 1013 |
| BseGI | GGATG | 5 cut(s) | 745, 769, 1179, 1408, 1549 |
| BseJI | GATNNNNATC | 3 cut(s) | 223, 954, 1407 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 460, 1286, 1740 |
| BseMI | GCAATG | 1 cut(s) | 918 |
| BseMII | CTCAG | 3 cut(s) | 528, 645, 995 |
| BseNI | ACTGG | 3 cut(s) | 220, 968, 1050 |
| BseRI | GAGGAG | 2 cut(s) | 1646, 1720 |
| BseXI | GCAGC | 4 cut(s) | 509, 1126, 1163, 1522 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1650 |
| BshFI | GGCC | 3 cut(s) | 349, 1532, 1645 |
| BshVI | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BsiEI | CGRYCG | 1 cut(s) | 1650 |
| BsiSI | CCGG | 1 cut(s) | 803 |
| BslFI | GGGAC | 6 cut(s) | 312, 721, 739, 1289, 1307, 1457 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 460, 1286, 1740 |
| BsmAI | GTCTC | 2 cut(s) | 632, 973 |
| BsmBI | CGTCTC | 1 cut(s) | 632 |
| BsmFI | GGGAC | 6 cut(s) | 312, 721, 739, 1289, 1307, 1457 |
| BsnI | GGCC | 3 cut(s) | 349, 1532, 1645 |
| Bso31I | GGTCTC | 1 cut(s) | 973 |
| Bsp1407I | TGTACA | 2 cut(s) | 792, 1802 |
| BspACI | CCGC | 2 cut(s) | 371, 1533 |
| BspANI | GGCC | 3 cut(s) | 349, 1532, 1645 |
| BspCNI | CTCAG | 3 cut(s) | 529, 644, 994 |
| BspDI | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BspLI | GGNNCC | 1 cut(s) | 1323 |
| BspMI | ACCTGC | 1 cut(s) | 1742 |
| BspOI | GCTAGC | 1 cut(s) | 1169 |
| BspPI | GGATC | 3 cut(s) | 302, 710, 1185 |
| BspTNI | GGTCTC | 1 cut(s) | 973 |
| BsrDI | GCAATG | 1 cut(s) | 918 |
| BsrGI | TGTACA | 2 cut(s) | 792, 1802 |
| BsrI | ACTGG | 3 cut(s) | 220, 968, 1050 |
| BssECI | CCNNGG | 2 cut(s) | 228, 1013 |
| BssT1I | CCWWGG | 1 cut(s) | 1013 |
| Bst2UI | CCWGG | 2 cut(s) | 351, 1171 |
| Bst4CI | ACNGT | 7 cut(s) | 152, 387, 774, 887, 1070, 1424, 1515 |
| BstAUI | TGTACA | 2 cut(s) | 792, 1802 |
| BstBAI | YACGTR | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 4 cut(s) | 30, 1167, 1483, 1769 |
| BstDEI | CTNAG | 6 cut(s) | 356, 527, 537, 631, 662, 981 |
| BstF5I | GGATG | 5 cut(s) | 745, 769, 1179, 1408, 1549 |
| BstMAI | GTCTC | 2 cut(s) | 632, 973 |
| BstMCI | CGRYCG | 1 cut(s) | 1650 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1148, 1274, 1757 |
| BstNI | CCWGG | 2 cut(s) | 351, 1171 |
| BstNSI | RCATGY | 1 cut(s) | 32 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 772 |
| BstSCI | CCNGG | 3 cut(s) | 349, 802, 1169 |
| BstV1I | GCAGC | 4 cut(s) | 509, 1126, 1163, 1522 |
| BstV2I | GAAGAC | 1 cut(s) | 1425 |
| BstX2I | RGATCY | 2 cut(s) | 1081, 1090 |
| BstYI | RGATCY | 2 cut(s) | 1081, 1090 |
| Bsu15I | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BsuI | GTATCC | 2 cut(s) | 185, 1822 |
| BsuRI | GGCC | 3 cut(s) | 349, 1532, 1645 |
| BsuTUI | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| BtsCI | GGATG | 5 cut(s) | 745, 769, 1179, 1408, 1549 |
| BtsI | GCAGTG | 1 cut(s) | 415 |
| BtsIMutI | CAGTG | 2 cut(s) | 392, 415 |
| BveI | ACCTGC | 1 cut(s) | 1742 |
| Cac8I | GCNNGC | 4 cut(s) | 30, 1167, 1483, 1769 |
| Cfr13I | GGNCC | 2 cut(s) | 908, 1321 |
| ClaI | ATCGAT | 3 cut(s) | 555, 1180, 1650 |
| Csp6I | GTAC | 7 cut(s) | 524, 785, 793, 997, 1516, 1612, 1803 |
| CviQI | GTAC | 7 cut(s) | 524, 785, 793, 997, 1516, 1612, 1803 |
| DdeI | CTNAG | 6 cut(s) | 356, 527, 537, 631, 662, 981 |
| DraI | TTTAAA | 1 cut(s) | 732 |
| DraIII | CACNNNGTG | 1 cut(s) | 387 |
| EaeI | YGGCCR | 1 cut(s) | 1530 |
| Eco130I | CCWWGG | 1 cut(s) | 1013 |
| Eco31I | GGTCTC | 1 cut(s) | 973 |
| Eco32I | GATATC | 1 cut(s) | 800 |
| Eco47I | GGWCC | 2 cut(s) | 908, 1321 |
| Eco57I | CTGAAG | 3 cut(s) | 384, 779, 1098 |
| Eco72I | CACGTG | 1 cut(s) | 494 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 2 cut(s) | 349, 1169 |
| EcoRV | GATATC | 1 cut(s) | 800 |
| EcoT14I | CCWWGG | 1 cut(s) | 1013 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 30 |
| ErhI | CCWWGG | 1 cut(s) | 1013 |
| Esp3I | CGTCTC | 1 cut(s) | 632 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 660, 692, 997, 1029 |
| FaqI | GGGAC | 6 cut(s) | 312, 721, 739, 1289, 1307, 1457 |
| Fnu4HI | GCNGC | 5 cut(s) | 498, 1140, 1152, 1533, 1536 |
| FokI | GGATG | 5 cut(s) | 752, 776, 1186, 1415, 1556 |
| Fsp4HI | GCNGC | 5 cut(s) | 498, 1140, 1152, 1533, 1536 |
| FspBI | CTAG | 8 cut(s) | 45, 66, 602, 788, 1085, 1119, 1166, 1271 |
| GluI | GCNGC | 5 cut(s) | 498, 1140, 1152, 1533, 1536 |
| HaeIII | GGCC | 3 cut(s) | 349, 1532, 1645 |
| HapII | CCGG | 1 cut(s) | 803 |
| HindIII | AAGCTT | 2 cut(s) | 456, 1023 |
| HinfI | GANTC | 8 cut(s) | 161, 219, 608, 689, 860, 1057, 1182, 1606 |
| HpaII | CCGG | 1 cut(s) | 803 |
| HphI | GGTGA | 3 cut(s) | 524, 560, 965 |
| Hpy166II | GTNNAC | 4 cut(s) | 793, 809, 911, 1010 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 1066 |
| Hpy8I | GTNNAC | 4 cut(s) | 793, 809, 911, 1010 |
| HpyCH4III | ACNGT | 7 cut(s) | 152, 387, 774, 887, 1070, 1424, 1515 |
| HpyCH4IV | ACGT | 2 cut(s) | 493, 913 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1148, 1274, 1757 |
| HpyF3I | CTNAG | 6 cut(s) | 356, 527, 537, 631, 662, 981 |
| HpySE526I | ACGT | 2 cut(s) | 493, 913 |
| Lsp1109I | GCAGC | 4 cut(s) | 509, 1126, 1163, 1522 |
| LweI | GCATC | 4 cut(s) | 457, 1264, 1417, 1468 |
| MaeI | CTAG | 8 cut(s) | 45, 66, 602, 788, 1085, 1119, 1166, 1271 |
| MaeII | ACGT | 2 cut(s) | 493, 913 |
| MaeIII | GTNAC | 2 cut(s) | 152, 1202 |
| MflI | RGATCY | 2 cut(s) | 1081, 1090 |
| MlyI | GAGTC | 2 cut(s) | 869, 1066 |
| MmeI | TCCRAC | 2 cut(s) | 743, 850 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 30 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1092 |
| MseI | TTAA | 6 cut(s) | 101, 242, 450, 578, 731, 1464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 183, 207 |
| MspA1I | CMGCKG | 2 cut(s) | 713, 1535 |
| MspI | CCGG | 1 cut(s) | 803 |
| MspR9I | CCNGG | 3 cut(s) | 351, 804, 1171 |
| MvaI | CCWGG | 2 cut(s) | 351, 1171 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1148, 1274, 1757 |
| NciI | CCSGG | 1 cut(s) | 804 |
| NheI | GCTAGC | 1 cut(s) | 1165 |
| NlaIV | GGNNCC | 1 cut(s) | 1323 |
| NmuCI | GTSAC | 2 cut(s) | 152, 1202 |
| NsiI | ATGCAT | 2 cut(s) | 6, 30 |
| NspI | RCATGY | 1 cut(s) | 32 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1092 |
| PfeI | GAWTC | 6 cut(s) | 161, 219, 608, 689, 1182, 1606 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 460 |
| PkrI | GCNGC | 5 cut(s) | 499, 1141, 1153, 1534, 1537 |
| Ple19I | CGATCG | 1 cut(s) | 1650 |
| PleI | GAGTC | 2 cut(s) | 868, 1065 |
| PmaCI | CACGTG | 1 cut(s) | 494 |
| PmlI | CACGTG | 1 cut(s) | 494 |
| PpsI | GAGTC | 2 cut(s) | 868, 1065 |
| Ppu21I | YACGTR | 1 cut(s) | 494 |
| PpuMI | RGGWCCY | 1 cut(s) | 1321 |
| PshAI | GACNNNNGTC | 1 cut(s) | 772 |
| PshBI | ATTAAT | 1 cut(s) | 578 |
| Psp5II | RGGWCCY | 1 cut(s) | 1321 |
| Psp6I | CCWGG | 2 cut(s) | 349, 1169 |
| PspCI | CACGTG | 1 cut(s) | 494 |
| PspGI | CCWGG | 2 cut(s) | 349, 1169 |
| PspN4I | GGNNCC | 1 cut(s) | 1323 |
| PspPI | GGNCC | 2 cut(s) | 908, 1321 |
| PspPPI | RGGWCCY | 1 cut(s) | 1321 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1343, 1375 |
| PsuI | RGATCY | 2 cut(s) | 1081, 1090 |
| PvuI | CGATCG | 1 cut(s) | 1650 |
| PvuII | CAGCTG | 1 cut(s) | 713 |
| RsaI | GTAC | 7 cut(s) | 525, 786, 794, 998, 1517, 1613, 1804 |
| RsaNI | GTAC | 7 cut(s) | 524, 785, 793, 997, 1516, 1612, 1803 |
| RseI | CAYNNNNRTG | 2 cut(s) | 183, 207 |
| SaqAI | TTAA | 6 cut(s) | 101, 242, 450, 578, 731, 1464 |
| SatI | GCNGC | 5 cut(s) | 498, 1140, 1152, 1533, 1536 |
| Sau96I | GGNCC | 2 cut(s) | 908, 1321 |
| ScaI | AGTACT | 1 cut(s) | 525 |
| SchI | GAGTC | 2 cut(s) | 869, 1066 |
| ScrFI | CCNGG | 3 cut(s) | 351, 804, 1171 |
| SfaNI | GCATC | 4 cut(s) | 457, 1264, 1417, 1468 |
| SinI | GGWCC | 2 cut(s) | 908, 1321 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 183, 207 |
| SmlI | CTYRAG | 2 cut(s) | 320, 970 |
| SmoI | CTYRAG | 2 cut(s) | 320, 970 |
| SpeI | ACTAGT | 1 cut(s) | 787 |
| SphI | GCATGC | 1 cut(s) | 32 |
| SsiI | CCGC | 2 cut(s) | 371, 1533 |
| SspMI | CTAG | 8 cut(s) | 45, 66, 602, 788, 1085, 1119, 1166, 1271 |
| StyD4I | CCNGG | 3 cut(s) | 349, 802, 1169 |
| StyI | CCWWGG | 1 cut(s) | 1013 |
| TaaI | ACNGT | 7 cut(s) | 152, 387, 774, 887, 1070, 1424, 1515 |
| TaiI | ACGT | 2 cut(s) | 496, 916 |
| TaqI | TCGA | 3 cut(s) | 555, 1180, 1650 |
| TatI | WGTACW | 4 cut(s) | 523, 792, 1515, 1802 |
| TauI | GCSGC | 1 cut(s) | 1535 |
| TfiI | GAWTC | 6 cut(s) | 161, 219, 608, 689, 1182, 1606 |
| Tru1I | TTAA | 6 cut(s) | 101, 242, 450, 578, 731, 1464 |
| Tru9I | TTAA | 6 cut(s) | 101, 242, 450, 578, 731, 1464 |
| TscAI | CASTG | 2 cut(s) | 392, 415 |
| TseFI | GTSAC | 2 cut(s) | 152, 1202 |
| TseI | GCWGC | 4 cut(s) | 497, 1139, 1151, 1535 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 1202 |
| TspRI | CASTG | 2 cut(s) | 392, 415 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 460 |
| VpaK11BI | GGWCC | 2 cut(s) | 908, 1321 |
| VspI | ATTAAT | 1 cut(s) | 578 |
| XbaI | TCTAGA | 3 cut(s) | 601, 1084, 1270 |
| XceI | RCATGY | 1 cut(s) | 32 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1011 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1092 |
| XspI | CTAG | 8 cut(s) | 45, 66, 602, 788, 1085, 1119, 1166, 1271 |
| ZrmI | AGTACT | 1 cut(s) | 525 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 30 |