FvH4_1g09718
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000505
Physical Location & Seq
Reverse (-)
5293181 .. 5293900
720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09718.t1

Sequence Viewer

Length: 267 bp
ATGCTTATAGACAATTCTGTGAGAGGTTCCAAGAAGCTGTATGATGCTGCTGACTTTGAGCACAGTTCAAAGCCGATTGATGCAATACTGGACGAGGCGCACGCAATATATCATGTGTGCTATGACTATGCTATCAATATAAGAGATGTGCAAAGATGTTCCTTTGCATGGAAAGTAGCTGGTAAAGCTTTGTGCGAGCTTCAAACCAAGAAGACGGGTGAGAAGTGGTTAAGCATTGCTCCTTCTGTTTTACAACAGCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

89

Amino Acids

9.94

Weight (kDa)

6.81

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP_head PF26253 8 - 72 1.2e-12 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 69, 203
AluBI AGCT 5 cut(s) 37, 179, 188, 199, 259
AluI AGCT 5 cut(s) 37, 179, 188, 199, 259
Alw21I GWGCWC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 2 cut(s) 34, 70
BpiI GAAGAC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 102, 197
BstHHI GCGC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 218
Cac8I GCNNGC 2 cut(s) 102, 197
CfoI GCGC 1 cut(s) 100
CviAII CATG 2 cut(s) 113, 168
CviJI RGCY 6 cut(s) 37, 73, 179, 188, 199, 259
CviKI_1 RGCY 6 cut(s) 37, 73, 179, 188, 199, 259
FaeI CATG 2 cut(s) 116, 171
FaiI YATR 8 cut(s) 8, 42, 109, 114, 123, 129, 140, 169
FatI CATG 2 cut(s) 112, 167
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 116, 171
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HindIII AAGCTT 1 cut(s) 186
HphI GGTGA 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 83, 151, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 116, 171
HspAI GCGC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 74, 165
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 34, 70
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 13
MnlI CCTC 2 cut(s) 17, 88
MseI TTAA 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 185
NlaIII CATG 2 cut(s) 116, 171
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 63
SetI ASST 6 cut(s) 28, 39, 181, 190, 201, 261
SfaNI GCATC 2 cut(s) 34, 70
Sse9I AATT 1 cut(s) 13
TaaI ACNGT 1 cut(s) 65
TasI AATT 1 cut(s) 13
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.