RchiOBHm_Chr2g0091701
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000505
Physical Location & Seq
Forward (+)
5372196 .. 5374065
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46687

Sequence Viewer

Length: 924 bp
ATGATGAAGCAGAGTTGGGATGAGCAAGAAGAGGTGCCGCGTCTACCTCAGAAAGTGGAGGTATTGCCCCGGCAAATCTGTGAGGACAAAAAGCAACCTTGGCCGGACGCTGACGCCATAAAGCAGCTCGCGACTCAGAGCGAGGAGTCGGCAATGGAGACCCCGAAGAAAATCTCCTCCAGCAGCAAAAGCATCAGAACCACCCTCGGCCGTTACATCAAGTGGATGATCGGGCAATGTAGCTCTGCTTCTCCGTCGCCGTCCAAAACGGTGCGTTCCGCTCACGTTCAAAGCCCTGGTGCTACCTCACTCACTCCTCAGAGACTTCACTTCAGCCCTCCAGGTGAGGCAGTTAGTGACAGGTCACCTGTTGTTGGGCAATTACCTTATTGCTCTGGTTCTCCATCGAAAGCCGCGGGGACTTGTTCTTGTCCAAGATTGTCTGCTCATGCACAAGTTGATGAGAGGTCTCGAGGCGAGGCATTTAATCAGCTGTCACCTGTTATTGGTCAATCACCTTATTCCTCTGGTTCTCCTTTGAAAACCGCAGACACTTCTTCTTATCAAAGACGGTCTGCTCCTGTACAACTGGATGAGAGATTTCAAGGTGATGCATTTAGTCATCGGTCACCTGTTGGACAACCACCTTATTCCTCTGCTTCTCCATCAAAAGCTGCAGGCACTACTAATCAAAGATTGTCTCCTCCTGTACAACTTGATGATACGTTTCAAGGTGAGGCATTTAATCACTGGTCACCTGTTATTGAACAATCACCTTATTCCTCTGGTTCTCCATTGAAAGCTGCAGGCACTTCTTATCAAAGACTGTCTGCTCCTGTCCAACATGATGAGAGGTTTCAAGGTTTGTCACTACTTTCACTTTCTCAATTGATTCATTTTGTTGTGGTCAGCGGTGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

307

Amino Acids

33.23

Weight (kDa)

8.77

Isoelectric Point (pI)

71.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 43
AccII CGCG 3 cut(s) 40, 131, 416
AciI CCGC 6 cut(s) 38, 279, 414, 416, 546, 912
AcoI YGGCCR 2 cut(s) 101, 208
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 2 cut(s) 585, 711
AfiI CCNNNNNNNGG 2 cut(s) 374, 506
AgsI TTSAA 7 cut(s) 290, 541, 605, 731, 767, 799, 860
AjnI CCWGG 2 cut(s) 295, 340
AluBI AGCT 5 cut(s) 127, 243, 493, 674, 803
AluI AGCT 5 cut(s) 127, 243, 493, 674, 803
Alw26I GTCTC 4 cut(s) 152, 316, 474, 705
Ama87I CYCGRG 1 cut(s) 471
AoxI GGCC 2 cut(s) 101, 208
ApeKI GCWGC 4 cut(s) 124, 183, 674, 803
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 9 cut(s) 356, 357, 489, 507, 620, 621, 746, 747, 765
AvaI CYCGRG 1 cut(s) 471
BanI GGYRCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbvI GCAGC 4 cut(s) 136, 195, 661, 790
BccI CCATC 2 cut(s) 412, 673
BceAI ACGGC 2 cut(s) 195, 244
BciT130I CCWGG 2 cut(s) 297, 342
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 4 cut(s) 152, 316, 474, 705
BfmI CTRYAG 2 cut(s) 675, 804
BisI GCNGC 6 cut(s) 38, 125, 184, 414, 675, 804
BlsI GCNGC 6 cut(s) 39, 126, 185, 415, 676, 805
Bme1390I CCNGG 3 cut(s) 70, 297, 342
BmeT110I CYCGRG 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 70, 297, 342
BmsI GCATC 2 cut(s) 201, 601
BpmI CTGGAG 2 cut(s) 163, 324
BpuMI CCSGG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 2 cut(s) 152, 474
BsaJI CCNNGG 5 cut(s) 68, 98, 205, 295, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 506
Bse1I ACTGG 2 cut(s) 594, 755
Bse3DI GCAATG 2 cut(s) 159, 242
BseBI CCWGG 2 cut(s) 297, 342
BseDI CCNNGG 5 cut(s) 68, 98, 205, 295, 414
BseGI GGATG 3 cut(s) 25, 231, 598
BseLI CCNNNNNNNGG 2 cut(s) 374, 506
BseMI GCAATG 2 cut(s) 159, 242
BseMII CTCAG 3 cut(s) 62, 149, 332
BseNI ACTGG 2 cut(s) 594, 755
BseRI GAGGAG 4 cut(s) 158, 166, 306, 693
BseX3I CGGCCG 1 cut(s) 208
BseXI GCAGC 4 cut(s) 136, 195, 661, 790
Bsh1236I CGCG 3 cut(s) 40, 131, 416
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 103, 210
BshNI GGYRCC 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 471
BsiSI CCGG 2 cut(s) 70, 104
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 374, 506
BsmAI GTCTC 4 cut(s) 152, 316, 474, 705
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 2 cut(s) 103, 210
Bso31I GGTCTC 2 cut(s) 152, 474
BsoBI CYCGRG 1 cut(s) 471
Bsp1407I TGTACA 2 cut(s) 583, 709
Bsp143I GATC 1 cut(s) 228
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 6 cut(s) 38, 279, 414, 416, 546, 912
BspANI GGCC 2 cut(s) 103, 210
BspCNI CTCAG 3 cut(s) 61, 148, 331
BspFNI CGCG 3 cut(s) 40, 131, 416
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 2 cut(s) 679, 808
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 2 cut(s) 152, 474
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 159, 242
BsrGI TGTACA 2 cut(s) 583, 709
BsrI ACTGG 2 cut(s) 594, 755
BssECI CCNNGG 5 cut(s) 68, 98, 205, 295, 414
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 297, 342
Bst4CI ACNGT 3 cut(s) 271, 573, 828
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 2 cut(s) 583, 709
BstC8I GCNNGC 3 cut(s) 129, 679, 808
BstDEI CTNAG 3 cut(s) 48, 135, 318
BstDSI CCRYGG 1 cut(s) 414
BstEII GGTNACC 3 cut(s) 363, 627, 753
BstF5I GGATG 3 cut(s) 25, 231, 598
BstFNI CGCG 3 cut(s) 40, 131, 416
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 4 cut(s) 152, 316, 474, 705
BstMBI GATC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 100, 189
BstNI CCWGG 2 cut(s) 297, 342
BstPI GGTNACC 3 cut(s) 363, 627, 753
BstSCI CCNGG 3 cut(s) 68, 295, 340
BstSFI CTRYAG 2 cut(s) 675, 804
BstUI CGCG 3 cut(s) 40, 131, 416
BstV1I GCAGC 4 cut(s) 136, 195, 661, 790
BstZI CGGCCG 1 cut(s) 208
BsuRI GGCC 2 cut(s) 103, 210
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 25, 231, 598
BtsIMutI CAGTG 1 cut(s) 748
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 3 cut(s) 129, 679, 808
Cfr42I CCGCGG 1 cut(s) 417
CseI GACGC 3 cut(s) 29, 116, 122
Csp6I GTAC 2 cut(s) 584, 710
CviAII CATG 2 cut(s) 449, 845
CviQI GTAC 2 cut(s) 584, 710
DdeI CTNAG 3 cut(s) 48, 135, 318
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 2 cut(s) 101, 208
EagI CGGCCG 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 98
Eco31I GGTCTC 2 cut(s) 152, 474
Eco52I CGGCCG 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 471
Eco91I GGTNACC 3 cut(s) 363, 627, 753
EcoO65I GGTNACC 3 cut(s) 363, 627, 753
EcoRII CCWGG 2 cut(s) 295, 340
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 2 cut(s) 452, 848
FaiI YATR 3 cut(s) 119, 450, 846
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 448, 844
FauI CCCGC 1 cut(s) 409
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 6 cut(s) 38, 125, 184, 414, 675, 804
FokI GGATG 3 cut(s) 32, 238, 605
Fsp4HI GCNGC 6 cut(s) 38, 125, 184, 414, 675, 804
GluI GCNGC 6 cut(s) 38, 125, 184, 414, 675, 804
GsuI CTGGAG 2 cut(s) 163, 324
HaeIII GGCC 2 cut(s) 103, 210
HapII CCGG 2 cut(s) 70, 104
HgaI GACGC 3 cut(s) 29, 116, 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 452, 848
HinfI GANTC 3 cut(s) 133, 146, 892
HpaII CCGG 2 cut(s) 70, 104
HphI GGTGA 9 cut(s) 356, 357, 489, 507, 620, 621, 746, 747, 765
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 5 cut(s) 51, 138, 197, 321, 923
Hpy188III TCNNGA 2 cut(s) 130, 471
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 259
HpyCH4III ACNGT 3 cut(s) 271, 573, 828
HpyCH4IV ACGT 2 cut(s) 285, 725
HpyCH4V TGCA 4 cut(s) 452, 614, 677, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 189
HpyF3I CTNAG 3 cut(s) 48, 135, 318
HpySE526I ACGT 2 cut(s) 285, 725
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 452, 848
KspI CCGCGG 1 cut(s) 417
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 583, 838
Lsp1109I GCAGC 4 cut(s) 136, 195, 661, 790
LweI GCATC 2 cut(s) 201, 601
MaeII ACGT 2 cut(s) 285, 725
MaeIII GTNAC 7 cut(s) 212, 356, 363, 495, 627, 753, 867
MalI GATC 1 cut(s) 230
MbiI CCGCTC 1 cut(s) 281
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 41, 178, 549
MfeI CAATTG 1 cut(s) 887
MluCI AATT 2 cut(s) 380, 887
MlyI GAGTC 2 cut(s) 127, 155
MmeI TCCRAC 2 cut(s) 616, 865
Mph1103I ATGCAT 1 cut(s) 616
MseI TTAA 2 cut(s) 486, 744
MspA1I CMGCKG 3 cut(s) 416, 493, 912
MspI CCGG 2 cut(s) 70, 104
MspR9I CCNGG 3 cut(s) 70, 297, 342
MunI CAATTG 1 cut(s) 887
MvaI CCWGG 2 cut(s) 297, 342
MvnI CGCG 3 cut(s) 40, 131, 416
MwoI GCNNNNNNNGC 2 cut(s) 100, 189
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 228
NlaIII CATG 2 cut(s) 452, 848
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 6 cut(s) 356, 363, 495, 627, 753, 867
NruI TCGCGA 1 cut(s) 131
NsiI ATGCAT 1 cut(s) 616
PaeR7I CTCGAG 1 cut(s) 471
PfeI GAWTC 1 cut(s) 892
PkrI GCNGC 6 cut(s) 39, 126, 185, 415, 676, 805
PleI GAGTC 2 cut(s) 127, 154
PpsI GAGTC 2 cut(s) 127, 154
Psp6I CCWGG 2 cut(s) 295, 340
PspEI GGTNACC 3 cut(s) 363, 627, 753
PspGI CCWGG 2 cut(s) 295, 340
PspN4I GGNNCC 1 cut(s) 36
PstI CTGCAG 2 cut(s) 679, 808
PvuII CAGCTG 1 cut(s) 493
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 2 cut(s) 585, 711
RsaNI GTAC 2 cut(s) 584, 710
SacII CCGCGG 1 cut(s) 417
SaqAI TTAA 2 cut(s) 486, 744
SatI GCNGC 6 cut(s) 38, 125, 184, 414, 675, 804
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 127, 155
ScrFI CCNGG 3 cut(s) 70, 297, 342
SfaNI GCATC 2 cut(s) 201, 601
SfcI CTRYAG 2 cut(s) 675, 804
Sfr274I CTCGAG 1 cut(s) 471
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SlaI CTCGAG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
Sse9I AATT 2 cut(s) 380, 887
SsiI CCGC 6 cut(s) 38, 279, 414, 416, 546, 912
StyD4I CCNGG 3 cut(s) 68, 295, 340
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 271, 573, 828
TaiI ACGT 2 cut(s) 288, 728
TaqI TCGA 2 cut(s) 407, 472
TaqII GACCGA 1 cut(s) 615
TasI AATT 2 cut(s) 380, 887
TatI WGTACW 2 cut(s) 583, 709
TauI GCSGC 2 cut(s) 40, 416
TfiI GAWTC 1 cut(s) 892
Tru1I TTAA 2 cut(s) 486, 744
Tru9I TTAA 2 cut(s) 486, 744
TscAI CASTG 1 cut(s) 755
TseFI GTSAC 6 cut(s) 356, 363, 495, 627, 753, 867
TseI GCWGC 4 cut(s) 124, 183, 674, 803
Tsp45I GTSAC 6 cut(s) 356, 363, 495, 627, 753, 867
TspDTI ATGAA 2 cut(s) 20, 884
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 755
XhoI CTCGAG 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.