Rh5AG056700
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000505
Physical Location & Seq
Forward (+)
4930604 .. 4930837
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG056700.1

Sequence Viewer

Length: 234 bp
ATGAAGCAGAGTTGGGATGAGCAAGAAGAGGTGCTGCGTCGTCTACCTCAGAAAGTGGAGGTATTGCTCCGGCAAATCTGTGAGGACAAAAAGCAACCTTGGCCGGACGCTGACGCCATAAGGAAGCTCGCGACTCAGAGCGAGGAGTCGGCAATGGAATCTCGACCAGCAAAAGCATCAGAACCAGTGAACCACCCTCGGCCGTTACATCAAGTGGATGATCGGGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

77

Amino Acids

9.0

Weight (kDa)

5.65

Isoelectric Point (pI)

78.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AccII CGCG 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 101, 200
AcyI GRCGYC 1 cut(s) 114
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AoxI GGCC 2 cut(s) 101, 200
ApeKI GCWGC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmsI GCATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 98, 197
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 2 cut(s) 159, 234
BseDI CCNNGG 2 cut(s) 98, 197
BseGI GGATG 2 cut(s) 22, 223
BseMI GCAATG 2 cut(s) 159, 234
BseMII CTCAG 2 cut(s) 62, 149
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 103, 202
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 70, 104
BsnI GGCC 2 cut(s) 103, 202
Bsp143I GATC 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 131
BspANI GGCC 2 cut(s) 103, 202
BspCNI CTCAG 2 cut(s) 61, 148
BspFNI CGCG 1 cut(s) 131
BsrDI GCAATG 2 cut(s) 159, 234
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 98, 197
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 48, 135
BstF5I GGATG 2 cut(s) 22, 223
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 21
BstZI CGGCCG 1 cut(s) 200
BsuRI GGCC 2 cut(s) 103, 202
BtsCI GGATG 2 cut(s) 22, 223
BtsIMutI CAGTG 1 cut(s) 192
BtuMI TCGCGA 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 129
CseI GACGC 3 cut(s) 26, 116, 122
CviJI RGCY 3 cut(s) 103, 127, 202
CviKI_1 RGCY 3 cut(s) 103, 127, 202
DdeI CTNAG 2 cut(s) 48, 135
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 101, 200
EagI CGGCCG 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 98
Eco52I CGGCCG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaiI YATR 1 cut(s) 119
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 29, 230
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 2 cut(s) 103, 202
HapII CCGG 2 cut(s) 70, 104
HgaI GACGC 3 cut(s) 26, 116, 122
Hin1I GRCGYC 1 cut(s) 114
HinfI GANTC 3 cut(s) 133, 146, 158
HpaII CCGG 2 cut(s) 70, 104
Hpy166II GTNNAC 2 cut(s) 44, 190
Hpy188I TCNGA 3 cut(s) 51, 138, 181
Hpy188III TCNNGA 2 cut(s) 130, 162
Hpy8I GTNNAC 2 cut(s) 44, 190
Hpy99I CGWCG 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 48, 135
Hsp92I GRCGYC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 83, 117, 180, 198
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 204
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 38
MlyI GAGTC 2 cut(s) 127, 155
MnlI CCTC 6 cut(s) 22, 52, 57, 76, 136, 207
MspI CCGG 2 cut(s) 70, 104
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 178
NruI TCGCGA 1 cut(s) 131
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 2 cut(s) 127, 154
PpsI GAGTC 2 cut(s) 127, 154
RruI TCGCGA 1 cut(s) 131
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 2 cut(s) 127, 155
SetI ASST 5 cut(s) 33, 49, 63, 100, 129
SfaNI GCATC 1 cut(s) 185
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 1 cut(s) 163
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 192
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.