Rorug05G0017800
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000505
Physical Location & Seq
Forward (+)
1202759 .. 1203274
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0017800.1

Sequence Viewer

Length: 516 bp
ATGGCTTCAAGACCTTCAAAATTTACGACTGATTGTTCTTCTTCAATGACAACCTTTGCTAAGTATGCAGAAACTTGCTTGCTCACACAGAAAACTCATCGGAGGAGGAATCGAAAGTCTCCTATAGGAGTTCTCAGCTTTGGAGATGACCGGAACTATTCCGGCCTTGTTAATCATGATCCTAGTTCTATGGTTCCTTTACCTACTGAAGCTTCAATCAAATGGGATGTGAATTCAAATGAAAAGAGTGGCTGCAGTGATGGAAATTTTAGATCATCCTCACAAGTGGTTCAAGCTTCGTTAAGTTGGCTTATAAACGCAAATGGTGATGAAACTGAGGAAGAATTGGGCGATTGCAAAGCTGATAGTGTTGACGATGAGGTTTCGACGTCGGCCTTTGCCAAGTATGCATCCACTGTGAGTGGGAGGATGAATTCCAAACCTCCTAAAGGAGTTCTTAACATTGGCACTGATTTTGAAGATGATAATGCTACTGCCACTACCTCTACCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

171

Amino Acids

18.51

Weight (kDa)

5.03

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AatII GACGTC 1 cut(s) 392
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 4 cut(s) 20, 232, 265, 433
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 7 cut(s) 9, 18, 45, 216, 237, 293, 479
AluBI AGCT 4 cut(s) 138, 212, 296, 362
AluI AGCT 4 cut(s) 138, 212, 296, 362
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 173
AoxI GGCC 2 cut(s) 163, 393
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 4 cut(s) 20, 232, 265, 433
AsuHPI GGTGA 1 cut(s) 338
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 123, 253
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 449
BseGI GGATG 4 cut(s) 232, 275, 410, 435
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 148, 327
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 2 cut(s) 165, 395
BsiSI CCGG 2 cut(s) 151, 162
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 2 cut(s) 165, 395
Bsp143I GATC 2 cut(s) 178, 272
BspANI GGCC 2 cut(s) 165, 395
BspCNI CTCAG 2 cut(s) 147, 328
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 257
BspPI GGATC 1 cut(s) 173
BssMI GATC 2 cut(s) 178, 272
BssNI GRCGYC 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 418
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 60, 134, 336
BstENI CCTNNNNNAGG 1 cut(s) 447
BstF5I GGATG 4 cut(s) 232, 275, 410, 435
BstKTI GATC 2 cut(s) 181, 275
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 178, 272
BstMWI GCNNNNNNNGC 2 cut(s) 65, 407
BstSFI CTRYAG 2 cut(s) 123, 253
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 165, 395
BtsCI GGATG 4 cut(s) 232, 275, 410, 435
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 262, 414, 468
Cac8I GCNNGC 1 cut(s) 80
CciI TCATGA 1 cut(s) 175
CviAII CATG 1 cut(s) 176
CviJI RGCY 9 cut(s) 5, 138, 165, 212, 252, 296, 310, 362, 395
CviKI_1 RGCY 9 cut(s) 5, 138, 165, 212, 252, 296, 310, 362, 395
DdeI CTNAG 3 cut(s) 60, 134, 336
DpnI GATC 2 cut(s) 180, 274
DpnII GATC 2 cut(s) 178, 272
Eco57I CTGAAG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 447
EcoRI GAATTC 2 cut(s) 232, 433
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 1 cut(s) 179
FaiI YATR 6 cut(s) 66, 125, 177, 191, 314, 408
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 4 cut(s) 239, 262, 397, 442
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 183
GluI GCNGC 1 cut(s) 253
HaeIII GGCC 2 cut(s) 165, 395
HapII CCGG 2 cut(s) 151, 162
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 2 cut(s) 210, 294
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 151, 162
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 102, 515
Hpy188III TCNNGA 2 cut(s) 9, 176
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 2 cut(s) 391, 394
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 68, 255, 357, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 407
HpyF3I CTNAG 3 cut(s) 60, 134, 336
HpySE526I ACGT 1 cut(s) 389
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 2 cut(s) 178, 272
LpnPI CCDG 2 cut(s) 164, 175
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 389
MalI GATC 2 cut(s) 180, 274
MboI GATC 2 cut(s) 178, 272
MboII GAAGA 4 cut(s) 30, 33, 353, 491
MluCI AATT 5 cut(s) 20, 232, 265, 344, 433
MnlI CCTC 8 cut(s) 96, 99, 289, 331, 373, 420, 453, 514
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 3 cut(s) 171, 302, 459
MspI CCGG 2 cut(s) 151, 162
MwoI GCNNNNNNNGC 2 cut(s) 65, 407
NdeII GATC 2 cut(s) 178, 272
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 412
PagI TCATGA 1 cut(s) 175
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 254
PsiI TTATAA 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 171, 302, 459
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 178, 272
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 2 cut(s) 123, 253
Sse9I AATT 5 cut(s) 20, 232, 265, 344, 433
SspMI CTAG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 112, 386
TasI AATT 5 cut(s) 20, 232, 265, 344, 433
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 3 cut(s) 171, 302, 459
Tru9I TTAA 3 cut(s) 171, 302, 459
TscAI CASTG 3 cut(s) 262, 421, 475
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 255, 345, 446
TspRI CASTG 3 cut(s) 262, 421, 475
XagI CCTNNNNNAGG 1 cut(s) 447
XapI RAATTY 4 cut(s) 20, 232, 265, 433
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.