Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PB1 | PF00564 | 275 - 349 | 9.3e-14 | PB1 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1665 |
| Acc65I | GGTACC | 1 cut(s) | 416 |
| AccB1I | GGYRCC | 2 cut(s) | 416, 1868 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1351 |
| AciI | CCGC | 2 cut(s) | 257, 2140 |
| AclWI | GGATC | 5 cut(s) | 744, 898, 1064, 1077, 1251 |
| AcoI | YGGCCR | 2 cut(s) | 1392, 1637 |
| AcsI | RAATTY | 1 cut(s) | 2106 |
| AcuI | CTGAAG | 3 cut(s) | 377, 678, 1026 |
| AfaI | GTAC | 3 cut(s) | 418, 1132, 1140 |
| AfeI | AGCGCT | 1 cut(s) | 1521 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 243, 1066, 1351, 1401, 1864 |
| AjnI | CCWGG | 3 cut(s) | 565, 1344, 1394 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 821, 853, 1766, 1798 |
| Alw26I | GTCTC | 3 cut(s) | 945, 1283, 1625 |
| AlwI | GGATC | 5 cut(s) | 744, 898, 1064, 1077, 1251 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1087, 1499 |
| Aor51HI | AGCGCT | 1 cut(s) | 1521 |
| AoxI | GGCC | 5 cut(s) | 318, 1392, 1557, 1637, 1671 |
| ApeKI | GCWGC | 7 cut(s) | 562, 1522, 1567, 1570, 1614, 1699, 1820 |
| ApoI | RAATTY | 1 cut(s) | 2106 |
| AseI | ATTAAT | 1 cut(s) | 303 |
| Asp718I | GGTACC | 1 cut(s) | 416 |
| AspLEI | GCGC | 2 cut(s) | 1102, 1522 |
| AspS9I | GGNCC | 3 cut(s) | 166, 319, 1558 |
| AsuC2I | CCSGG | 1 cut(s) | 646 |
| AsuHPI | GGTGA | 9 cut(s) | 53, 517, 529, 707, 734, 854, 913, 964, 974 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BaeGI | GKGCMC | 2 cut(s) | 1480, 1871 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 90, 123, 1122, 1155 |
| BalI | TGGCCA | 2 cut(s) | 1394, 1639 |
| BamHI | GGATCC | 1 cut(s) | 1069 |
| BanI | GGYRCC | 2 cut(s) | 416, 1868 |
| BanII | GRGCYC | 1 cut(s) | 862 |
| BbsI | GAAGAC | 2 cut(s) | 666, 1683 |
| BbvCI | CCTCAGC | 1 cut(s) | 750 |
| BbvI | GCAGC | 7 cut(s) | 549, 1509, 1579, 1582, 1626, 1711, 1807 |
| BccI | CCATC | 8 cut(s) | 268, 849, 983, 993, 1648, 1771, 1781, 2119 |
| BciT130I | CCWGG | 3 cut(s) | 567, 1346, 1396 |
| BciVI | GTATCC | 2 cut(s) | 91, 300 |
| BclI | TGATCA | 1 cut(s) | 1063 |
| BcnI | CCSGG | 1 cut(s) | 646 |
| BcoDI | GTCTC | 3 cut(s) | 945, 1283, 1625 |
| BfaI | CTAG | 3 cut(s) | 485, 1743, 2123 |
| BfmI | CTRYAG | 2 cut(s) | 1014, 1821 |
| BfoI | RGCGCY | 1 cut(s) | 1523 |
| BfuI | GTATCC | 2 cut(s) | 91, 300 |
| BglII | AGATCT | 1 cut(s) | 1844 |
| BisI | GCNGC | 8 cut(s) | 258, 563, 1523, 1568, 1571, 1615, 1700, 1821 |
| BlpI | GCTNAGC | 1 cut(s) | 1197 |
| BlsI | GCNGC | 8 cut(s) | 259, 564, 1524, 1569, 1572, 1616, 1701, 1822 |
| Bme1390I | CCNGG | 4 cut(s) | 567, 646, 1346, 1396 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 3 cut(s) | 166, 319, 1558 |
| BmiI | GGNNCC | 5 cut(s) | 167, 418, 435, 1071, 1870 |
| BmrFI | CCNGG | 4 cut(s) | 567, 646, 1346, 1396 |
| BmrI | ACTGGG | 1 cut(s) | 1759 |
| BmsI | GCATC | 1 cut(s) | 1222 |
| BmuI | ACTGGG | 1 cut(s) | 1759 |
| BpiI | GAAGAC | 2 cut(s) | 666, 1683 |
| BpmI | CTGGAG | 1 cut(s) | 476 |
| Bpu10I | CCTNAGC | 1 cut(s) | 750 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1197 |
| BpuEI | CTTGAG | 2 cut(s) | 344, 1296 |
| BpuMI | CCSGG | 1 cut(s) | 646 |
| BsaBI | GATNNNNATC | 2 cut(s) | 735, 1068 |
| BsaJI | CCNNGG | 6 cut(s) | 169, 293, 566, 645, 1395, 1561 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 243, 1066, 1351, 1401, 1864 |
| Bse1I | ACTGG | 4 cut(s) | 459, 869, 1299, 1765 |
| Bse3DI | GCAATG | 3 cut(s) | 111, 123, 1624 |
| Bse8I | GATNNNNATC | 2 cut(s) | 735, 1068 |
| BseBI | CCWGG | 3 cut(s) | 567, 1346, 1396 |
| BseDI | CCNNGG | 6 cut(s) | 169, 293, 566, 645, 1395, 1561 |
| BseGI | GGATG | 4 cut(s) | 142, 1266, 1640, 1792 |
| BseJI | GATNNNNATC | 2 cut(s) | 735, 1068 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 243, 1066, 1351, 1401, 1864 |
| BseMI | GCAATG | 3 cut(s) | 111, 123, 1624 |
| BseMII | CTCAG | 7 cut(s) | 395, 741, 875, 986, 1211, 1266, 1862 |
| BseNI | ACTGG | 4 cut(s) | 459, 869, 1299, 1765 |
| BseRI | GAGGAG | 3 cut(s) | 189, 800, 1301 |
| BseSI | GKGCMC | 2 cut(s) | 1480, 1871 |
| BseXI | GCAGC | 7 cut(s) | 549, 1509, 1579, 1582, 1626, 1711, 1807 |
| BseYI | CCCAGC | 1 cut(s) | 1964 |
| BshFI | GGCC | 5 cut(s) | 320, 1394, 1559, 1639, 1673 |
| BshNI | GGYRCC | 2 cut(s) | 416, 1868 |
| BsiSI | CCGG | 1 cut(s) | 645 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 243, 1066, 1351, 1401, 1864 |
| BsmAI | GTCTC | 3 cut(s) | 945, 1283, 1625 |
| BsmBI | CGTCTC | 1 cut(s) | 945 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsmI | GAATGC | 1 cut(s) | 2179 |
| BsnI | GGCC | 5 cut(s) | 320, 1394, 1559, 1639, 1673 |
| Bsp1286I | GDGCHC | 3 cut(s) | 862, 1480, 1871 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1197 |
| Bsp19I | CCATGG | 1 cut(s) | 169 |
| BspACI | CCGC | 2 cut(s) | 257, 2140 |
| BspANI | GGCC | 5 cut(s) | 320, 1394, 1559, 1639, 1673 |
| BspCNI | CTCAG | 7 cut(s) | 396, 742, 874, 987, 1210, 1267, 1861 |
| BspHI | TCATGA | 3 cut(s) | 124, 631, 1249 |
| BspLI | GGNNCC | 5 cut(s) | 167, 418, 435, 1071, 1870 |
| BspMAI | CTGCAG | 2 cut(s) | 1018, 1825 |
| BspPI | GGATC | 5 cut(s) | 744, 898, 1064, 1077, 1251 |
| BspQI | GCTCTTC | 2 cut(s) | 984, 1713 |
| BspT107I | GGYRCC | 2 cut(s) | 416, 1868 |
| BsrDI | GCAATG | 3 cut(s) | 111, 123, 1624 |
| BsrI | ACTGG | 4 cut(s) | 459, 869, 1299, 1765 |
| BssECI | CCNNGG | 6 cut(s) | 169, 293, 566, 645, 1395, 1561 |
| BssT1I | CCWWGG | 2 cut(s) | 169, 1561 |
| Bst2UI | CCWGG | 3 cut(s) | 567, 1346, 1396 |
| Bst4CI | ACNGT | 5 cut(s) | 65, 421, 517, 1294, 1728 |
| Bst6I | CTCTTC | 6 cut(s) | 353, 581, 612, 984, 1713, 2014 |
| BstC8I | GCNNGC | 3 cut(s) | 1219, 1584, 1697 |
| BstDEI | CTNAG | 9 cut(s) | 404, 750, 861, 893, 995, 1197, 1275, 1655, 1848 |
| BstDSI | CCRYGG | 1 cut(s) | 169 |
| BstEII | GGTNACC | 1 cut(s) | 970 |
| BstF5I | GGATG | 4 cut(s) | 142, 1266, 1640, 1792 |
| BstH2I | RGCGCY | 1 cut(s) | 1523 |
| BstHHI | GCGC | 2 cut(s) | 1102, 1522 |
| BstMAI | GTCTC | 3 cut(s) | 945, 1283, 1625 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 66, 1579, 1817, 1829, 1882 |
| BstNI | CCWGG | 3 cut(s) | 567, 1346, 1396 |
| BstNSI | RCATGY | 1 cut(s) | 1699 |
| BstPI | GGTNACC | 1 cut(s) | 970 |
| BstSCI | CCNGG | 4 cut(s) | 565, 644, 1344, 1394 |
| BstSFI | CTRYAG | 2 cut(s) | 1014, 1821 |
| BstSLI | GKGCMC | 2 cut(s) | 1480, 1871 |
| BstV1I | GCAGC | 7 cut(s) | 549, 1509, 1579, 1582, 1626, 1711, 1807 |
| BstV2I | GAAGAC | 2 cut(s) | 666, 1683 |
| BstX2I | RGATCY | 4 cut(s) | 736, 1069, 1243, 1844 |
| BstYI | RGATCY | 4 cut(s) | 736, 1069, 1243, 1844 |
| BsuI | GTATCC | 2 cut(s) | 91, 300 |
| BsuRI | GGCC | 5 cut(s) | 320, 1394, 1559, 1639, 1673 |
| BtgI | CCRYGG | 1 cut(s) | 169 |
| BtsCI | GGATG | 4 cut(s) | 142, 1266, 1640, 1792 |
| BtsI | GCAGTG | 1 cut(s) | 2031 |
| BtsIMutI | CAGTG | 4 cut(s) | 452, 1306, 2031, 2190 |
| Cac8I | GCNNGC | 3 cut(s) | 1219, 1584, 1697 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1087, 1499 |
| CciI | TCATGA | 3 cut(s) | 124, 631, 1249 |
| CfoI | GCGC | 2 cut(s) | 1102, 1522 |
| Cfr13I | GGNCC | 3 cut(s) | 166, 319, 1558 |
| Csp6I | GTAC | 3 cut(s) | 417, 1131, 1139 |
| CviQI | GTAC | 3 cut(s) | 417, 1131, 1139 |
| DdeI | CTNAG | 9 cut(s) | 404, 750, 861, 893, 995, 1197, 1275, 1655, 1848 |
| DraI | TTTAAA | 1 cut(s) | 2181 |
| EaeI | YGGCCR | 2 cut(s) | 1392, 1637 |
| Eam1104I | CTCTTC | 6 cut(s) | 353, 581, 612, 984, 1713, 2014 |
| EarI | CTCTTC | 6 cut(s) | 353, 581, 612, 984, 1713, 2014 |
| EciI | GGCGGA | 1 cut(s) | 2155 |
| Eco130I | CCWWGG | 2 cut(s) | 169, 1561 |
| Eco24I | GRGCYC | 1 cut(s) | 862 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco47III | AGCGCT | 1 cut(s) | 1521 |
| Eco57I | CTGAAG | 3 cut(s) | 377, 678, 1026 |
| Eco91I | GGTNACC | 1 cut(s) | 970 |
| EcoO65I | GGTNACC | 1 cut(s) | 970 |
| EcoRI | GAATTC | 1 cut(s) | 2106 |
| EcoRII | CCWGG | 3 cut(s) | 565, 1344, 1394 |
| EcoT14I | CCWWGG | 2 cut(s) | 169, 1561 |
| EcoT22I | ATGCAT | 1 cut(s) | 1237 |
| EcoT38I | GRGCYC | 1 cut(s) | 862 |
| ErhI | CCWWGG | 2 cut(s) | 169, 1561 |
| Esp3I | CGTCTC | 1 cut(s) | 945 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FauNDI | CATATG | 1 cut(s) | 1468 |
| FbaI | TGATCA | 1 cut(s) | 1063 |
| Fnu4HI | GCNGC | 8 cut(s) | 258, 563, 1523, 1568, 1571, 1615, 1700, 1821 |
| FokI | GGATG | 4 cut(s) | 149, 1273, 1627, 1799 |
| FriOI | GRGCYC | 1 cut(s) | 862 |
| Fsp4HI | GCNGC | 8 cut(s) | 258, 563, 1523, 1568, 1571, 1615, 1700, 1821 |
| FspBI | CTAG | 3 cut(s) | 485, 1743, 2123 |
| GlaI | GCGC | 2 cut(s) | 1101, 1521 |
| GluI | GCNGC | 8 cut(s) | 258, 563, 1523, 1568, 1571, 1615, 1700, 1821 |
| GsaI | CCCAGC | 1 cut(s) | 1968 |
| GsuI | CTGGAG | 1 cut(s) | 476 |
| HaeII | RGCGCY | 1 cut(s) | 1523 |
| HaeIII | GGCC | 5 cut(s) | 320, 1394, 1559, 1639, 1673 |
| HapII | CCGG | 1 cut(s) | 645 |
| HhaI | GCGC | 2 cut(s) | 1102, 1522 |
| Hin6I | GCGC | 2 cut(s) | 1100, 1520 |
| HinP1I | GCGC | 2 cut(s) | 1100, 1520 |
| HindIII | AAGCTT | 1 cut(s) | 1106 |
| HinfI | GANTC | 8 cut(s) | 589, 1010, 1019, 1226, 1427, 1439, 1712, 2040 |
| HpaII | CCGG | 1 cut(s) | 645 |
| HphI | GGTGA | 9 cut(s) | 53, 517, 529, 707, 734, 854, 913, 964, 974 |
| Hpy166II | GTNNAC | 3 cut(s) | 1141, 1387, 1736 |
| Hpy8I | GTNNAC | 3 cut(s) | 1141, 1387, 1736 |
| HpyCH4III | ACNGT | 5 cut(s) | 65, 421, 517, 1294, 1728 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 66, 1579, 1817, 1829, 1882 |
| HpyF3I | CTNAG | 9 cut(s) | 404, 750, 861, 893, 995, 1197, 1275, 1655, 1848 |
| HspAI | GCGC | 2 cut(s) | 1100, 1520 |
| KpnI | GGTACC | 1 cut(s) | 420 |
| Ksp22I | TGATCA | 1 cut(s) | 1063 |
| LguI | GCTCTTC | 2 cut(s) | 984, 1713 |
| LmnI | GCTCC | 3 cut(s) | 176, 1118, 1355 |
| Lsp1109I | GCAGC | 7 cut(s) | 549, 1509, 1579, 1582, 1626, 1711, 1807 |
| LweI | GCATC | 1 cut(s) | 1222 |
| MaeI | CTAG | 3 cut(s) | 485, 1743, 2123 |
| MaeIII | GTNAC | 2 cut(s) | 970, 1294 |
| MfeI | CAATTG | 1 cut(s) | 1372 |
| MflI | RGATCY | 4 cut(s) | 736, 1069, 1243, 1844 |
| MhlI | GDGCHC | 3 cut(s) | 862, 1480, 1871 |
| MlsI | TGGCCA | 2 cut(s) | 1394, 1639 |
| MluNI | TGGCCA | 2 cut(s) | 1394, 1639 |
| MlyI | GAGTC | 1 cut(s) | 598 |
| MmeI | TCCRAC | 4 cut(s) | 372, 572, 1772, 2000 |
| Mox20I | TGGCCA | 2 cut(s) | 1394, 1639 |
| Mph1103I | ATGCAT | 1 cut(s) | 1237 |
| MscI | TGGCCA | 2 cut(s) | 1394, 1639 |
| MseI | TTAA | 4 cut(s) | 303, 575, 1110, 2180 |
| MslI | CAYNNNNRTG | 4 cut(s) | 116, 228, 230, 1471 |
| Msp20I | TGGCCA | 2 cut(s) | 1394, 1639 |
| MspA1I | CMGCKG | 2 cut(s) | 1201, 1702 |
| MspI | CCGG | 1 cut(s) | 645 |
| MspR9I | CCNGG | 4 cut(s) | 567, 646, 1346, 1396 |
| MunI | CAATTG | 1 cut(s) | 1372 |
| Mva1269I | GAATGC | 1 cut(s) | 2179 |
| MvaI | CCWGG | 3 cut(s) | 567, 1346, 1396 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 66, 1579, 1817, 1829, 1882 |
| NciI | CCSGG | 1 cut(s) | 646 |
| NcoI | CCATGG | 1 cut(s) | 169 |
| NdeI | CATATG | 1 cut(s) | 1468 |
| NlaIV | GGNNCC | 5 cut(s) | 167, 418, 435, 1071, 1870 |
| NmuCI | GTSAC | 1 cut(s) | 970 |
| NsiI | ATGCAT | 1 cut(s) | 1237 |
| NspI | RCATGY | 1 cut(s) | 1699 |
| PaeI | GCATGC | 1 cut(s) | 1699 |
| PagI | TCATGA | 3 cut(s) | 124, 631, 1249 |
| PciSI | GCTCTTC | 2 cut(s) | 984, 1713 |
| PctI | GAATGC | 1 cut(s) | 2179 |
| PfeI | GAWTC | 7 cut(s) | 1010, 1019, 1226, 1427, 1439, 1712, 2040 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1351 |
| PfoI | TCCNGGA | 1 cut(s) | 1344 |
| PkrI | GCNGC | 8 cut(s) | 259, 564, 1524, 1569, 1572, 1616, 1701, 1822 |
| PleI | GAGTC | 1 cut(s) | 597 |
| PpsI | GAGTC | 1 cut(s) | 597 |
| PshBI | ATTAAT | 1 cut(s) | 303 |
| PsiI | TTATAA | 1 cut(s) | 1665 |
| Psp6I | CCWGG | 3 cut(s) | 565, 1344, 1394 |
| PspEI | GGTNACC | 1 cut(s) | 970 |
| PspFI | CCCAGC | 1 cut(s) | 1964 |
| PspGI | CCWGG | 3 cut(s) | 565, 1344, 1394 |
| PspN4I | GGNNCC | 5 cut(s) | 167, 418, 435, 1071, 1870 |
| PspPI | GGNCC | 3 cut(s) | 166, 319, 1558 |
| PstI | CTGCAG | 2 cut(s) | 1018, 1825 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1087, 1499 |
| PsuI | RGATCY | 4 cut(s) | 736, 1069, 1243, 1844 |
| PvuII | CAGCTG | 2 cut(s) | 1201, 1702 |
| RsaI | GTAC | 3 cut(s) | 418, 1132, 1140 |
| RsaNI | GTAC | 3 cut(s) | 417, 1131, 1139 |
| RseI | CAYNNNNRTG | 4 cut(s) | 116, 228, 230, 1471 |
| SapI | GCTCTTC | 2 cut(s) | 984, 1713 |
| SaqAI | TTAA | 4 cut(s) | 303, 575, 1110, 2180 |
| SatI | GCNGC | 8 cut(s) | 258, 563, 1523, 1568, 1571, 1615, 1700, 1821 |
| Sau96I | GGNCC | 3 cut(s) | 166, 319, 1558 |
| SchI | GAGTC | 1 cut(s) | 598 |
| ScrFI | CCNGG | 4 cut(s) | 567, 646, 1346, 1396 |
| SduI | GDGCHC | 3 cut(s) | 862, 1480, 1871 |
| SfaNI | GCATC | 1 cut(s) | 1222 |
| SfcI | CTRYAG | 2 cut(s) | 1014, 1821 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 116, 228, 230, 1471 |
| SmlI | CTYRAG | 2 cut(s) | 323, 1311 |
| SmoI | CTYRAG | 2 cut(s) | 323, 1311 |
| SphI | GCATGC | 1 cut(s) | 1699 |
| SsiI | CCGC | 2 cut(s) | 257, 2140 |
| SspMI | CTAG | 3 cut(s) | 485, 1743, 2123 |
| StyD4I | CCNGG | 4 cut(s) | 565, 644, 1344, 1394 |
| StyI | CCWWGG | 2 cut(s) | 169, 1561 |
| TaaI | ACNGT | 5 cut(s) | 65, 421, 517, 1294, 1728 |
| TaqI | TCGA | 1 cut(s) | 1323 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TfiI | GAWTC | 7 cut(s) | 1010, 1019, 1226, 1427, 1439, 1712, 2040 |
| Tru1I | TTAA | 4 cut(s) | 303, 575, 1110, 2180 |
| Tru9I | TTAA | 4 cut(s) | 303, 575, 1110, 2180 |
| TscAI | CASTG | 4 cut(s) | 459, 1306, 2031, 2197 |
| TseFI | GTSAC | 1 cut(s) | 970 |
| TseI | GCWGC | 7 cut(s) | 562, 1522, 1567, 1570, 1614, 1699, 1820 |
| Tsp45I | GTSAC | 1 cut(s) | 970 |
| TspGWI | ACGGA | 2 cut(s) | 818, 896 |
| TspRI | CASTG | 4 cut(s) | 459, 1306, 2031, 2197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1351 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| VspI | ATTAAT | 1 cut(s) | 303 |
| XapI | RAATTY | 1 cut(s) | 2106 |
| XceI | RCATGY | 1 cut(s) | 1699 |
| XspI | CTAG | 3 cut(s) | 485, 1743, 2123 |
| Zsp2I | ATGCAT | 1 cut(s) | 1237 |