RchiOBHm_Chr2g0091691
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000505
Physical Location & Seq
Forward (+)
5356894 .. 5357497
604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46686

Sequence Viewer

Length: 192 bp
ATGGATGAAATACTGGACGAGGCACACGCTATATATCATGTATGTTATGACCATGCTATGGATAAAAGAGATGTGAAAAAATGTTCCTTCGCATGGAGAGTTGCAGGTAAAGCTCAGTGCGAGCTTCACGCTAGGAAAAAGGATGAGAAGTGGTTAAACATTGCCCCTTCTGTTTTGAAAGAGCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

63

Amino Acids

7.37

Weight (kDa)

6.89

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP_head PF26253 3 - 49 7.4e-10 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 58, 93
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 3 cut(s) 113, 124, 184
AluI AGCT 3 cut(s) 113, 124, 184
Alw21I GWGCWC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BfaI CTAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 93
Bse1I ACTGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 159
BseGI GGATG 2 cut(s) 10, 148
BseLI CCNNNNNNNGG 2 cut(s) 58, 93
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 58, 93
Bsp1286I GDGCHC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 10, 148
BstMWI GCNNNNNNNGC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 10, 148
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 122
CviAII CATG 3 cut(s) 38, 53, 93
CviJI RGCY 3 cut(s) 113, 124, 184
CviKI_1 RGCY 3 cut(s) 113, 124, 184
DdeI CTNAG 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 3 cut(s) 41, 56, 96
FaiI YATR 8 cut(s) 32, 34, 39, 43, 48, 54, 59, 94
FatI CATG 3 cut(s) 37, 52, 92
FokI GGATG 2 cut(s) 17, 155
FriOI GRGCYC 1 cut(s) 186
FspBI CTAG 1 cut(s) 132
Hin1II CATG 3 cut(s) 41, 56, 96
HpyAV CCTTC 2 cut(s) 97, 177
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 3 cut(s) 41, 56, 96
LpnPI CCDG 1 cut(s) 90
MaeI CTAG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 186
MnlI CCTC 1 cut(s) 13
MseI TTAA 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 3 cut(s) 41, 56, 96
PflMI CCANNNNNTGG 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 155
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 109, 115, 126, 186
SspMI CTAG 1 cut(s) 132
SstI GAGCTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 58
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.