Rorug02G0019800
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000505
Physical Location & Seq
Forward (+)
1611574 .. 1615339
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0019800.1

Sequence Viewer

Length: 1683 bp
ATGGCGAAAGTAAAGATTGCAGGGACATGGGCAGGTGTGCTGGAGGTCGAACTGGACAATTGGACGGTGCCCATGTTGAGAGAAGAGGTTGCAAAGCGATCCAACTGCGAGCCCGGCTCGATCAACTTGATATGCGCAGGCCGAGTTTTGAAGGACGGCGATGGCAGCGAGAATTTGACCCAATTGGGTGTTAAGAACAACGCAAAGATTCTGGCTAGTCGGGTTTCTGCTCAGGAGGGTAAGTCTTTGGGTCAGGAGCTGATGGCTGAAAGCGAACGCGCTCAGAGACTCGCTCGGGTCAAGGCTGCTGCAACTGCGCTGTCCAAGAGACACGCTGATGGTTCATTGCCAATTGAAGATTTCAATATAGTACTTGAAGATCAGAGTGGAAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGCAATCATGATGGGCCTGATGCTTCATACCAATGCAAAGCAACTGATTAAAGCACAAAATTATCAAGATGCATTGGAAGTGCTCACCATGGGAGAGGAGGCTTTCTCTCTTTGTGATCTGAAGGTTATTGAGCTGGTTGACAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTTATGCTTAGAGACATCAACTGGCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAAGGACTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACGCCTTCAGGAAGGTCGCTATCCAGAGCGTGCACTATATTTGAGATTGGAGCTGCTGGAAGGGGTGGTGGCCTATCACAGTGGTCAGGTTTATAAGTCAATGAAGGTGTTGACTTCTGCACAAGAGAAGTTCACCCAGCTTCAGGTGCCGGATGAATCTCTTTCTCTTGTGATGAGCATGGGCTTCAGAGAACGAGATGCAAAAAGGGCACTGAGGATGAGCAATCAAGATGTTTCCAGTGCTGTTGATTTTCTCGTTGAGCAGAAAGCAAAGAGAGCCCAAAAACGGGAAGATGATATCCGGCAGGGAGATGAAATTAAGGAGCAAAAGAAGTATGGTACTACACCCCTGAAGAAAGCTGTGGATATCGAGAAATTGAACCAACTGGTCTCCATTGGGTTTGAAAAGGAGCTTGCTGCTGAAGCACTACGAAGAAATGAGAATGACAGTGAGAAGGCACTGGATGATTTGACGAATCCAGAGACAAATTCTTCCATACAGCAACATCTTGAATCAAGGAAAAGTAAACGACAGCGCCAAGCAGTAGATGCTTCAGTTGAAGCTCTTGTACGCATGGGCTTTGACAGATCATCAGCGGTCGAAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCCGTCGACTGCTCTCGGGACAGGCACCAAACCCCACAAATGCTGCTGACCAACCTGAGGCAATTCCTGCAGTCGATGCTAACAATAATAGCCAATCTGATGCTGCTACTGACATTGCAAATTCTCTTGCTTCAATGCTTGATAATCAAAATGGTGAAGTCGGAGTTCCTTCAACATCCAGTAATGCATCAGAGCGTGATGCAGAAATGGAAAGCGAACTTGCTGAAGAACTAGCACAAGCAGATGCTTTCACTGACTATGACATCGAAGTTACTAAAGAAGGTGAAGCCATAAGTGAGTACTTGGCTCTACTGAATTCAGCGGGAACTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

560

Amino Acids

61.73

Weight (kDa)

5.06

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_7 PF22562 291 - 324 9.2e-06 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AarI CACCTGC 1 cut(s) 23
Acc16I TGCGCA 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 3 cut(s) 67, 856, 1372
AccI GTMKAC 1 cut(s) 1354
AccII CGCG 1 cut(s) 279
AciI CCGC 3 cut(s) 424, 1307, 1670
AclWI GGATC 2 cut(s) 93, 415
AcsI RAATTY 5 cut(s) 172, 645, 1198, 1468, 1663
AcuI CTGAAG 8 cut(s) 566, 701, 836, 880, 1082, 1152, 1248, 1593
AcyI GRCGYC 1 cut(s) 712
AfaI GTAC 5 cut(s) 372, 399, 1051, 1281, 1649
AfiI CCNNNNNNNGG 4 cut(s) 853, 996, 997, 1405
AluBI AGCT 9 cut(s) 259, 559, 683, 763, 850, 1070, 1123, 1274, 1316
AluI AGCT 9 cut(s) 259, 559, 683, 763, 850, 1070, 1123, 1274, 1316
Alw21I GWGCWC 3 cut(s) 510, 685, 745
Alw26I GTCTC 6 cut(s) 280, 322, 407, 612, 1105, 1187
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 2 cut(s) 93, 415
AlwNI CAGNNNCTG 1 cut(s) 259
Ama87I CYCGRG 2 cut(s) 294, 1363
AoxI GGCC 3 cut(s) 139, 439, 780
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 7 cut(s) 165, 305, 308, 763, 1127, 1391, 1451
ApoI RAATTY 5 cut(s) 172, 645, 1198, 1468, 1663
AspLEI GCGC 4 cut(s) 137, 281, 319, 1248
AspS9I GGNCC 2 cut(s) 439, 1339
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 502, 835, 1514, 1643
AvaI CYCGRG 2 cut(s) 294, 1363
AvaII GGWCC 1 cut(s) 1339
AxyI CCTNAGG 1 cut(s) 1404
BaeGI GKGCMC 3 cut(s) 72, 745, 922
BanI GGYRCC 3 cut(s) 67, 856, 1372
BanII GRGCYC 3 cut(s) 114, 685, 991
BarI GAAGNNNNNNTAC 2 cut(s) 1263, 1295
BauI CACGAG 1 cut(s) 702
Bbv12I GWGCWC 3 cut(s) 510, 685, 745
BbvI GCAGC 7 cut(s) 177, 292, 295, 750, 1114, 1378, 1438
BccI CCATC 4 cut(s) 155, 256, 332, 430
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 6 cut(s) 280, 322, 407, 612, 1105, 1187
BfaI CTAG 2 cut(s) 216, 1580
BfmI CTRYAG 1 cut(s) 1416
BfoI RGCGCY 1 cut(s) 1249
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 7 cut(s) 166, 306, 309, 764, 1128, 1392, 1452
BlsI GCNGC 7 cut(s) 167, 307, 310, 765, 1129, 1393, 1453
BmcAI AGTACT 2 cut(s) 372, 1649
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 1339
BmeT110I CYCGRG 2 cut(s) 294, 1363
BmgT120I GGNCC 2 cut(s) 439, 1339
BmiI GGNNCC 3 cut(s) 69, 858, 1374
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 9 cut(s) 435, 484, 898, 1249, 1414, 1438, 1537, 1544, 1582
BplI GAGNNNNNCTC 6 cut(s) 101, 133, 277, 309, 515, 547
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 1105
BsaJI CCNNGG 1 cut(s) 513
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 853, 996, 997, 1405
Bse1I ACTGG 6 cut(s) 57, 632, 948, 1101, 1176, 1527
Bse21I CCTNAGG 1 cut(s) 1404
Bse3DI GCAATG 2 cut(s) 344, 1461
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 4 cut(s) 868, 933, 1180, 1523
BseLI CCNNNNNNNGG 4 cut(s) 853, 996, 997, 1405
BseMI GCAATG 2 cut(s) 344, 1461
BseMII CTCAG 5 cut(s) 245, 296, 648, 914, 1395
BseNI ACTGG 6 cut(s) 57, 632, 948, 1101, 1176, 1527
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 3 cut(s) 72, 745, 922
BseXI GCAGC 7 cut(s) 177, 292, 295, 750, 1114, 1378, 1438
BseYI CCCAGC 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 1311
BshFI GGCC 3 cut(s) 141, 441, 782
BshNI GGYRCC 3 cut(s) 67, 856, 1372
BshVI ATCGAT 1 cut(s) 588
BsiEI CGRYCG 1 cut(s) 1311
BsiHKAI GWGCWC 3 cut(s) 510, 685, 745
BsiHKCI CYCGRG 2 cut(s) 294, 1363
BsiSI CCGG 3 cut(s) 114, 860, 1012
BslFI GGGAC 3 cut(s) 37, 1345, 1380
BslI CCNNNNNNNGG 4 cut(s) 853, 996, 997, 1405
BsmAI GTCTC 6 cut(s) 280, 322, 407, 612, 1105, 1187
BsmFI GGGAC 3 cut(s) 37, 1345, 1380
BsnI GGCC 3 cut(s) 141, 441, 782
Bso31I GGTCTC 1 cut(s) 1105
BsoBI CYCGRG 2 cut(s) 294, 1363
Bsp1286I GDGCHC 7 cut(s) 72, 114, 510, 685, 745, 922, 991
Bsp143I GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 3 cut(s) 424, 1307, 1670
BspANI GGCC 3 cut(s) 141, 441, 782
BspCNI CTCAG 5 cut(s) 244, 295, 647, 915, 1396
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 69, 858, 1374
BspMAI CTGCAG 1 cut(s) 1420
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 93, 415
BspT107I GGYRCC 3 cut(s) 67, 856, 1372
BspTNI GGTCTC 1 cut(s) 1105
BsrDI GCAATG 2 cut(s) 344, 1461
BsrI ACTGG 6 cut(s) 57, 632, 948, 1101, 1176, 1527
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
BssNI GRCGYC 1 cut(s) 712
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 513
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 3 cut(s) 67, 791, 1160
Bst6I CTCTTC 2 cut(s) 78, 703
BstACI GRCGYC 1 cut(s) 712
BstAPI GCANNNNNTGC 3 cut(s) 1259, 1415, 1424
BstC8I GCNNGC 5 cut(s) 110, 139, 426, 741, 1125
BstDEI CTNAG 7 cut(s) 231, 282, 614, 634, 923, 1404, 1677
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 868, 933, 1180, 1523
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 1249
BstHHI GCGC 4 cut(s) 137, 281, 319, 1248
BstKTI GATC 7 cut(s) 101, 123, 382, 410, 421, 544, 1301
BstMAI GTCTC 6 cut(s) 280, 322, 407, 612, 1105, 1187
BstMBI GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
BstMCI CGRYCG 1 cut(s) 1311
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 1416
BstSLI GKGCMC 3 cut(s) 72, 745, 922
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 7 cut(s) 177, 292, 295, 750, 1114, 1378, 1438
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 1404
BsuRI GGCC 3 cut(s) 141, 441, 782
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 4 cut(s) 868, 933, 1180, 1523
BtsIMutI CAGTG 7 cut(s) 642, 796, 920, 955, 1165, 1169, 1599
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 5 cut(s) 110, 139, 426, 741, 1125
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 432
CfoI GCGC 4 cut(s) 137, 281, 319, 1248
Cfr13I GGNCC 2 cut(s) 439, 1339
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 720
Csp6I GTAC 5 cut(s) 371, 398, 1050, 1280, 1648
CviAII CATG 7 cut(s) 27, 73, 433, 514, 686, 889, 1285
CviQI GTAC 5 cut(s) 371, 398, 1050, 1280, 1648
DdeI CTNAG 7 cut(s) 231, 282, 614, 634, 923, 1404, 1677
DpnI GATC 7 cut(s) 100, 122, 381, 409, 420, 543, 1300
DpnII GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
Eam1104I CTCTTC 2 cut(s) 78, 703
EarI CTCTTC 2 cut(s) 78, 703
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 3 cut(s) 114, 685, 991
Eco31I GGTCTC 1 cut(s) 1105
Eco32I GATATC 2 cut(s) 1009, 1078
Eco47I GGWCC 1 cut(s) 1339
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 8 cut(s) 566, 701, 836, 880, 1082, 1152, 1248, 1593
Eco81I CCTNAGG 1 cut(s) 1404
Eco88I CYCGRG 2 cut(s) 294, 1363
EcoICRI GAGCTC 1 cut(s) 683
EcoRI GAATTC 2 cut(s) 645, 1663
EcoRV GATATC 2 cut(s) 1009, 1078
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 2 cut(s) 499, 1537
EcoT38I GRGCYC 3 cut(s) 114, 685, 991
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 7 cut(s) 30, 76, 436, 517, 689, 892, 1288
FaqI GGGAC 3 cut(s) 37, 1345, 1380
FatI CATG 7 cut(s) 26, 72, 432, 513, 685, 888, 1284
FauI CCCGC 2 cut(s) 417, 1663
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 1354
Fnu4HI GCNGC 7 cut(s) 166, 306, 309, 764, 1128, 1392, 1452
FokI GGATG 4 cut(s) 875, 940, 1187, 1510
FriOI GRGCYC 3 cut(s) 114, 685, 991
Fsp4HI GCNGC 7 cut(s) 166, 306, 309, 764, 1128, 1392, 1452
FspBI CTAG 2 cut(s) 216, 1580
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 4 cut(s) 136, 280, 318, 1247
GluI GCNGC 7 cut(s) 166, 306, 309, 764, 1128, 1392, 1452
GsaI CCCAGC 1 cut(s) 850
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 1249
HaeIII GGCC 3 cut(s) 141, 441, 782
HapII CCGG 3 cut(s) 114, 860, 1012
HgaI GACGC 1 cut(s) 720
HhaI GCGC 4 cut(s) 137, 281, 319, 1248
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 7 cut(s) 30, 76, 436, 517, 689, 892, 1288
Hin6I GCGC 4 cut(s) 135, 279, 317, 1246
HinP1I GCGC 4 cut(s) 135, 279, 317, 1246
HincII GTYRAC 3 cut(s) 565, 822, 1355
HindII GTYRAC 3 cut(s) 565, 822, 1355
HindIII AAGCTT 1 cut(s) 1314
HinfI GANTC 6 cut(s) 208, 288, 695, 866, 1186, 1223
HpaII CCGG 3 cut(s) 114, 860, 1012
HphI GGTGA 4 cut(s) 502, 835, 1514, 1643
Hpy166II GTNNAC 6 cut(s) 565, 743, 822, 843, 1238, 1355
Hpy188I TCNGA 8 cut(s) 285, 384, 412, 546, 899, 1447, 1511, 1540
Hpy8I GTNNAC 6 cut(s) 565, 743, 822, 843, 1238, 1355
Hpy99I CGWCG 1 cut(s) 1356
HpyCH4III ACNGT 3 cut(s) 67, 791, 1160
HpyF3I CTNAG 7 cut(s) 231, 282, 614, 634, 923, 1404, 1677
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 7 cut(s) 30, 76, 436, 517, 689, 892, 1288
HspAI GCGC 4 cut(s) 135, 279, 317, 1246
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
LmnI GCTCC 4 cut(s) 256, 760, 1033, 1120
Lsp1109I GCAGC 7 cut(s) 177, 292, 295, 750, 1114, 1378, 1438
LweI GCATC 9 cut(s) 435, 484, 898, 1249, 1414, 1438, 1537, 1544, 1582
MaeI CTAG 2 cut(s) 216, 1580
MaeIII GTNAC 1 cut(s) 1618
MalI GATC 7 cut(s) 100, 122, 381, 409, 420, 543, 1300
MboI GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
MboII GAAGA 9 cut(s) 95, 368, 389, 690, 1013, 1075, 1155, 1194, 1586
MfeI CAATTG 3 cut(s) 58, 182, 351
MhlI GDGCHC 7 cut(s) 72, 114, 510, 685, 745, 922, 991
MlyI GAGTC 2 cut(s) 282, 689
MmeI TCCRAC 2 cut(s) 126, 1489
MnlI CCTC 8 cut(s) 37, 79, 229, 514, 517, 918, 1322, 1399
Mph1103I ATGCAT 2 cut(s) 499, 1537
MseI TTAA 3 cut(s) 192, 474, 1029
MslI CAYNNNNRTG 2 cut(s) 336, 456
MspA1I CMGCKG 3 cut(s) 424, 1307, 1670
MspI CCGG 3 cut(s) 114, 860, 1012
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 3 cut(s) 58, 182, 351
MvnI CGCG 1 cut(s) 279
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 513
NdeII GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
NlaIII CATG 7 cut(s) 30, 76, 436, 517, 689, 892, 1288
NlaIV GGNNCC 3 cut(s) 69, 858, 1374
NmeAIII GCCGAG 1 cut(s) 167
NsbI TGCGCA 1 cut(s) 136
NsiI ATGCAT 2 cut(s) 499, 1537
PagI TCATGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 208, 866, 1186, 1223
PkrI GCNGC 7 cut(s) 167, 307, 310, 765, 1129, 1393, 1453
PleI GAGTC 2 cut(s) 282, 689
PpsI GAGTC 2 cut(s) 282, 689
PsiI TTATAA 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 846
PspN4I GGNNCC 3 cut(s) 69, 858, 1374
PspPI GGNCC 2 cut(s) 439, 1339
PstI CTGCAG 1 cut(s) 1420
PstNI CAGNNNCTG 1 cut(s) 259
RsaI GTAC 5 cut(s) 372, 399, 1051, 1281, 1649
RsaNI GTAC 5 cut(s) 371, 398, 1050, 1280, 1648
RseI CAYNNNNRTG 2 cut(s) 336, 456
SacI GAGCTC 1 cut(s) 685
SalI GTCGAC 1 cut(s) 1353
SaqAI TTAA 3 cut(s) 192, 474, 1029
SatI GCNGC 7 cut(s) 166, 306, 309, 764, 1128, 1392, 1452
Sau3AI GATC 7 cut(s) 98, 120, 379, 407, 418, 541, 1298
Sau96I GGNCC 2 cut(s) 439, 1339
ScaI AGTACT 2 cut(s) 372, 1649
SchI GAGTC 2 cut(s) 282, 689
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 7 cut(s) 72, 114, 510, 685, 745, 922, 991
SfaNI GCATC 9 cut(s) 435, 484, 898, 1249, 1414, 1438, 1537, 1544, 1582
SfcI CTRYAG 1 cut(s) 1416
SinI GGWCC 1 cut(s) 1339
SmiMI CAYNNNNRTG 2 cut(s) 336, 456
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SsiI CCGC 3 cut(s) 424, 1307, 1670
SspMI CTAG 2 cut(s) 216, 1580
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 67, 791, 1160
TaqI TCGA 8 cut(s) 48, 119, 588, 1080, 1311, 1354, 1422, 1614
TatI WGTACW 3 cut(s) 370, 397, 1647
TfiI GAWTC 4 cut(s) 208, 866, 1186, 1223
Tru1I TTAA 3 cut(s) 192, 474, 1029
Tru9I TTAA 3 cut(s) 192, 474, 1029
TscAI CASTG 7 cut(s) 642, 796, 927, 955, 1165, 1176, 1606
TseI GCWGC 7 cut(s) 165, 305, 308, 763, 1127, 1391, 1451
TspDTI ATGAA 5 cut(s) 333, 440, 827, 879, 1038
TspGWI ACGGA 1 cut(s) 1340
TspRI CASTG 7 cut(s) 642, 796, 927, 955, 1165, 1176, 1606
VneI GTGCAC 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 1339
XapI RAATTY 5 cut(s) 172, 645, 1198, 1468, 1663
XmiI GTMKAC 1 cut(s) 1354
XspI CTAG 2 cut(s) 216, 1580
ZrmI AGTACT 2 cut(s) 372, 1649
Zsp2I ATGCAT 2 cut(s) 499, 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.