RchiOBHm_Chr2g0091671
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000505
Physical Location & Seq
Forward (+)
5344027 .. 5347342
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46684

Sequence Viewer

Length: 948 bp
ATGGACGGTAAGGACCATCACCATATTCTTCTGGTTGTAAAGCCATCAGCTCTTTCTTGTATCCAACAATACCGCTGGCTTGTAACATTGCTCCAGTGCAACTTGATCATAGGTGAGGTTGTAACCAAGTCGCCAGATCTAGAGAAATATGGAGGCCATGGACAAGCACACTTGGCAGCTCTTGGTACTCTTGAATTCAGAAAACAATTTCTGATCTTGAGCTACATTAGAGAGGAAAAGTTAAAGAATGTTATAGTCGCAGAGGATATTAAGCATTTGAAAGATTTGCCAATGGCAGAGTTTGAGTCGAAAGTTTGGCTACTCTTCGGACATAAATATATCAGCAATGGAGACCGACAGTTGAATTTCGATTGGGATGGCAGACGCACACATTTCTATGAGTGCCATGTTACCAGAGATGGGAGTTACACATTCAAGGGCCCCTATCTACAAAATGAAAGAAGAACTCTCCTACAGAAACTATGTCAAGATGACAATGTTTTGATTGTGAAGTTTGATGAAGAAGGGACTCAGACAGGTTCTAGGACTTCTTATGATAATGACTATTCTACGTATATGAAGGTTGAGAGACAAGGGATTTTTGTTGGCTTGCGGCGCTATCGTTTCTTTGGTTTTAAAGATGGTGGTAAAAGAGATAAAATCAGAAGTCCCACGTCATCACCCGTAAAATGTTATTTTGTTCGTGTGAGCTCTGATGCAGCAGTAGACAGGGATGTAGGTTATTGGTTATCTAACAGAACAATTCATGAAGGAAGACGTCTAATTATGCATGTTGATACTCTGCCAAGTGTGGACAAGGTCATGGCTAGGTTGCCACTCATTTTTTTTAAGACAACGACCTTGGACGTAGATTGGTCACTAGTGAAAGTTGAAGAAATTGTTGACGTCAACTGTTGCGTTTGGTCCTTGAACTATTTTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

315

Amino Acids

36.72

Weight (kDa)

8.69

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP_helical PF26252 57 - 121 9.1e-10 RNA dependent RNA polymerase, helical domain
RdRP PF05183 143 - 302 2.4e-12 RNA dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 781, 909
AccI GTMKAC 1 cut(s) 726
AciI CCGC 2 cut(s) 73, 613
AcsI RAATTY 2 cut(s) 194, 364
AcyI GRCGYC 2 cut(s) 778, 906
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 7 cut(s) 194, 280, 364, 436, 893, 931, 943
AhlI ACTAGT 1 cut(s) 880
AjiI CACGTC 1 cut(s) 675
AluBI AGCT 4 cut(s) 50, 179, 222, 711
AluI AGCT 4 cut(s) 50, 179, 222, 711
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 2 cut(s) 345, 583
AoxI GGCC 2 cut(s) 154, 439
ApaI GGGCCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 176, 719
ApoI RAATTY 2 cut(s) 194, 364
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 4 cut(s) 13, 439, 440, 924
AsuHPI GGTGA 3 cut(s) 11, 125, 672
AvaII GGWCC 2 cut(s) 13, 924
BaeGI GKGCMC 1 cut(s) 443
BanII GRGCYC 2 cut(s) 443, 713
BbsI GAAGAC 1 cut(s) 781
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 188, 731
BccI CCATC 5 cut(s) 24, 52, 371, 413, 635
BciVI GTATCC 1 cut(s) 71
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 345, 583
BcuI ACTAGT 1 cut(s) 880
BfaI CTAG 4 cut(s) 140, 543, 828, 881
BfmI CTRYAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 619
BfuI GTATCC 1 cut(s) 71
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 177, 614, 720
BlsI GCNGC 3 cut(s) 178, 615, 721
Bme18I GGWCC 2 cut(s) 13, 924
BmgBI CACGTC 1 cut(s) 675
BmgT120I GGNCC 4 cut(s) 13, 439, 440, 924
BmiI GGNNCC 2 cut(s) 441, 442
BmsI GCATC 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 781
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 573
BsaHI GRCGYC 2 cut(s) 778, 906
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 157, 861
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 2 cut(s) 86, 352
BseDI CCNNGG 2 cut(s) 157, 861
BseGI GGATG 2 cut(s) 382, 739
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 2 cut(s) 86, 352
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 2 cut(s) 188, 731
BshFI GGCC 2 cut(s) 156, 441
BsiHKAI GWGCWC 1 cut(s) 713
BslFI GGGAC 2 cut(s) 541, 654
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 2 cut(s) 345, 583
BsmFI GGGAC 2 cut(s) 541, 654
BsnI GGCC 2 cut(s) 156, 441
Bso31I GGTCTC 1 cut(s) 345
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 443, 713
Bsp143I GATC 3 cut(s) 105, 136, 213
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 2 cut(s) 73, 613
BspANI GGCC 2 cut(s) 156, 441
BspCNI CTCAG 1 cut(s) 544
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 441, 442
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 2 cut(s) 86, 352
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 157, 861
BssMI GATC 3 cut(s) 105, 136, 213
BssNI GRCGYC 2 cut(s) 778, 906
BssT1I CCWWGG 2 cut(s) 157, 861
Bst4CI ACNGT 3 cut(s) 8, 360, 914
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 2 cut(s) 778, 906
BstBAI YACGTR 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 77, 611
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 382, 739
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 3 cut(s) 108, 139, 216
BstMAI GTCTC 2 cut(s) 345, 583
BstMBI GATC 3 cut(s) 105, 136, 213
BstMWI GCNNNNNNNGC 2 cut(s) 173, 615
BstNSI RCATGY 1 cut(s) 794
BstSFI CTRYAG 1 cut(s) 473
BstSLI GKGCMC 1 cut(s) 443
BstSNI TACGTA 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 188, 731
BstV2I GAAGAC 1 cut(s) 781
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 156, 441
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 675
BtsCI GGATG 2 cut(s) 382, 739
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 77, 611
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 618
Cfr13I GGNCC 4 cut(s) 13, 439, 440, 924
CseI GACGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 186
CviAII CATG 5 cut(s) 158, 407, 767, 791, 823
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 531
DpnI GATC 3 cut(s) 107, 138, 215
DpnII GATC 3 cut(s) 105, 136, 213
DraI TTTAAA 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 711
Eco105I TACGTA 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 157, 861
Eco24I GRGCYC 2 cut(s) 443, 713
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 13, 924
Eco53kI GAGCTC 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 711
EcoO109I RGGNCCY 2 cut(s) 439, 440
EcoRI GAATTC 1 cut(s) 194
EcoT14I CCWWGG 2 cut(s) 157, 861
EcoT22I ATGCAT 1 cut(s) 792
EcoT38I GRGCYC 2 cut(s) 443, 713
ErhI CCWWGG 2 cut(s) 157, 861
FaeI CATG 5 cut(s) 161, 410, 770, 794, 826
FaqI GGGAC 2 cut(s) 541, 654
FatI CATG 5 cut(s) 157, 406, 766, 790, 822
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 3 cut(s) 177, 614, 720
FokI GGATG 2 cut(s) 389, 746
FriOI GRGCYC 2 cut(s) 443, 713
Fsp4HI GCNGC 3 cut(s) 177, 614, 720
FspBI CTAG 4 cut(s) 140, 543, 828, 881
GlaI GCGC 1 cut(s) 617
GluI GCNGC 3 cut(s) 177, 614, 720
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 2 cut(s) 156, 441
HgaI GACGC 1 cut(s) 393
HhaI GCGC 1 cut(s) 618
Hin1I GRCGYC 2 cut(s) 778, 906
Hin1II CATG 5 cut(s) 161, 410, 770, 794, 826
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HincII GTYRAC 2 cut(s) 904, 910
HindII GTYRAC 2 cut(s) 904, 910
HinfI GANTC 2 cut(s) 305, 529
HphI GGTGA 3 cut(s) 11, 125, 672
Hpy166II GTNNAC 4 cut(s) 727, 814, 904, 910
Hpy188I TCNGA 6 cut(s) 200, 213, 329, 534, 665, 715
Hpy188III TCNNGA 5 cut(s) 140, 191, 217, 488, 767
Hpy8I GTNNAC 4 cut(s) 727, 814, 904, 910
HpyAV CCTTC 3 cut(s) 518, 574, 764
HpyCH4III ACNGT 3 cut(s) 8, 360, 914
HpyCH4IV ACGT 5 cut(s) 572, 674, 778, 867, 906
HpyCH4V TGCA 3 cut(s) 99, 719, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 615
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 5 cut(s) 572, 674, 778, 867, 906
Hsp92I GRCGYC 2 cut(s) 778, 906
Hsp92II CATG 5 cut(s) 161, 410, 770, 794, 826
HspAI GCGC 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 105, 136, 213
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 7 cut(s) 17, 61, 107, 147, 427, 522, 715
Lsp1109I GCAGC 2 cut(s) 188, 731
LweI GCATC 1 cut(s) 706
MaeI CTAG 4 cut(s) 140, 543, 828, 881
MaeII ACGT 5 cut(s) 572, 674, 778, 867, 906
MaeIII GTNAC 5 cut(s) 82, 121, 409, 425, 876
MalI GATC 3 cut(s) 107, 138, 215
MboI GATC 3 cut(s) 105, 136, 213
MboII GAAGA 6 cut(s) 20, 316, 474, 533, 786, 905
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 443, 713
MluCI AATT 6 cut(s) 194, 206, 364, 762, 783, 897
MlyI GAGTC 2 cut(s) 314, 523
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 4 cut(s) 109, 146, 226, 256
Mph1103I ATGCAT 1 cut(s) 792
MseI TTAA 4 cut(s) 242, 270, 636, 849
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 173, 615
NcoI CCATGG 1 cut(s) 157
NdeII GATC 3 cut(s) 105, 136, 213
NlaIII CATG 5 cut(s) 161, 410, 770, 794, 826
NlaIV GGNNCC 2 cut(s) 441, 442
NmuCI GTSAC 1 cut(s) 876
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 1 cut(s) 794
PagI TCATGA 1 cut(s) 766
PflFI GACNNNGTC 1 cut(s) 818
PkrI GCNGC 3 cut(s) 178, 615, 721
PleI GAGTC 2 cut(s) 313, 523
PpsI GAGTC 2 cut(s) 313, 523
Ppu21I YACGTR 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 713
PspN4I GGNNCC 2 cut(s) 441, 442
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 4 cut(s) 13, 439, 440, 924
PsuI RGATCY 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 818
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 4 cut(s) 242, 270, 636, 849
SatI GCNGC 3 cut(s) 177, 614, 720
Sau3AI GATC 3 cut(s) 105, 136, 213
Sau96I GGNCC 4 cut(s) 13, 439, 440, 924
SchI GAGTC 2 cut(s) 314, 523
SduI GDGCHC 2 cut(s) 443, 713
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 1 cut(s) 473
SinI GGWCC 2 cut(s) 13, 924
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SnaBI TACGTA 1 cut(s) 573
SpeI ACTAGT 1 cut(s) 880
Sse9I AATT 6 cut(s) 194, 206, 364, 762, 783, 897
SsiI CCGC 2 cut(s) 73, 613
SspMI CTAG 4 cut(s) 140, 543, 828, 881
SstI GAGCTC 1 cut(s) 713
StyI CCWWGG 2 cut(s) 157, 861
TaaI ACNGT 3 cut(s) 8, 360, 914
TaiI ACGT 5 cut(s) 575, 677, 781, 870, 909
TaqI TCGA 2 cut(s) 308, 369
TaqII GACCGA 1 cut(s) 369
TasI AATT 6 cut(s) 194, 206, 364, 762, 783, 897
TauI GCSGC 1 cut(s) 616
Tru1I TTAA 4 cut(s) 242, 270, 636, 849
Tru9I TTAA 4 cut(s) 242, 270, 636, 849
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 2 cut(s) 176, 719
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 5 cut(s) 471, 534, 593, 755, 783
TspRI CASTG 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 13, 924
XapI RAATTY 2 cut(s) 194, 364
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 4 cut(s) 140, 543, 828, 881
ZraI GACGTC 2 cut(s) 779, 907
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.