Rroxscaffold_1G00062190
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000505
Physical Location & Seq
Forward (+)
84232621 .. 84233864
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062190.1

Sequence Viewer

Length: 597 bp
ATGAAACAGAAGACAGATCTCTCAAAGGTGATAAAAGTTCTCTATTGTTTGCTTGTTCTTAAGCCCCCTTCCATCAATAAAAAAAACAGTTTTAGCACGCTCTTCCTCTGTGCAGAAATTCAGAAACTTCCTCCTTTTGAAGTTGACGTTCCTGAGGGTAGCTTGAAAGAATGGAAGAAACTATACCAAGATTACCGGAATGAGATGACCTCTGCCGTGGGAGCCGAAGATAAACAGGGCCAGAATCAGGCAGCCAATATCGTCATAAGAAAGTATAAAGAGATCCTAAACAAGGCTGAGGAGTTTGAGCAAAGTGATATGCGGCACAGACAACAAATATATAATGACGCACTCGCTATTTATTACGTTTGTTATGACTATGCCAAGAGTGTTAGGACTGAAACTGGTGCACAAGATGTCAAGAAATGTGGCTTTGCTTGGAAAGTTGCAGGAGCAGCTCTATGCCAGCTTCACGAAAACTGGAGTTTGAAACCTGGTGATAGAGATGGCAATAGGGAGGGTATGGTAAGGGGATTAAATTACCATCCTCATACCCGACTTCATTCCTCATCTTCTTACCCTCCCCAATCCCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

198

Amino Acids

22.69

Weight (kDa)

8.96

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP_head PF26253 77 - 160 5.6e-10 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 322
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 247, 292
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 140, 166, 490
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 3 cut(s) 162, 458, 469
AluI AGCT 3 cut(s) 162, 458, 469
Alw21I GWGCWC 1 cut(s) 412
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 251, 455
ApoI RAATTY 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 40, 509
AxyI CCTNAGG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 263, 467
BccI CCATC 3 cut(s) 80, 500, 552
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 16
BisI GCNGC 3 cut(s) 252, 323, 456
BlsI GCNGC 3 cut(s) 253, 324, 457
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 17
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 292
Bse1I ACTGG 2 cut(s) 409, 485
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 2 cut(s) 247, 292
BseMII CTCAG 2 cut(s) 144, 288
BseNI ACTGG 2 cut(s) 409, 485
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 2 cut(s) 263, 467
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 247, 292
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 16, 282
BspACI CCGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 145, 289
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 59
BsrI ACTGG 2 cut(s) 409, 485
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 16, 282
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 107
BstAFI CTTAAG 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 98, 467
BstDEI CTNAG 2 cut(s) 153, 297
BstDSI CCRYGG 1 cut(s) 216
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 2 cut(s) 19, 285
BstMBI GATC 2 cut(s) 16, 282
BstMWI GCNNNNNNNGC 2 cut(s) 221, 455
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 263, 467
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 2 cut(s) 16, 282
BstYI RGATCY 2 cut(s) 16, 282
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 98, 467
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 356
CsiI ACCWGGT 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviJI RGCY 9 cut(s) 64, 162, 224, 240, 254, 296, 432, 458, 469
CviKI_1 RGCY 9 cut(s) 64, 162, 224, 240, 254, 296, 432, 458, 469
DdeI CTNAG 2 cut(s) 153, 297
DpnI GATC 2 cut(s) 18, 284
DpnII GATC 2 cut(s) 16, 282
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 252, 323, 456
FokI GGATG 1 cut(s) 531
Fsp4HI GCNGC 3 cut(s) 252, 323, 456
GluI GCNGC 3 cut(s) 252, 323, 456
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 196
HphI GGTGA 2 cut(s) 40, 509
Hpy166II GTNNAC 2 cut(s) 145, 410
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 152, 421, 473
Hpy8I GTNNAC 2 cut(s) 145, 410
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 147, 366
HpyCH4V TGCA 3 cut(s) 113, 410, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 455
HpyF3I CTNAG 2 cut(s) 153, 297
HpySE526I ACGT 2 cut(s) 147, 366
Kzo9I GATC 2 cut(s) 16, 282
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 221, 452
Lsp1109I GCAGC 2 cut(s) 263, 467
MabI ACCWGGT 1 cut(s) 493
MaeII ACGT 2 cut(s) 147, 366
MalI GATC 2 cut(s) 18, 284
MboI GATC 2 cut(s) 16, 282
MboII GAAGA 5 cut(s) 22, 94, 187, 239, 564
MflI RGATCY 2 cut(s) 16, 282
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 2 cut(s) 117, 538
MnlI CCTC 9 cut(s) 116, 141, 148, 220, 292, 511, 558, 577, 591
MseI TTAA 2 cut(s) 60, 536
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 221, 455
NdeII GATC 2 cut(s) 16, 282
NlaIV GGNNCC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 253, 324, 457
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 2 cut(s) 16, 282
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 60, 536
SatI GCNGC 3 cut(s) 252, 323, 456
Sau3AI GATC 2 cut(s) 16, 282
Sau96I GGNCC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 412
SetI ASST 8 cut(s) 30, 150, 164, 212, 369, 460, 471, 496
SexAI ACCWGGT 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 117, 538
SsiI CCGC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 150, 369
TasI AATT 2 cut(s) 117, 538
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 60, 536
Tru9I TTAA 2 cut(s) 60, 536
TseI GCWGC 2 cut(s) 251, 455
TspDTI ATGAA 2 cut(s) 17, 551
Vha464I CTTAAG 1 cut(s) 59
VneI GTGCAC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.