RchiOBHm_Chr2g0091681
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000505
Physical Location & Seq
Forward (+)
5347344 .. 5356892
9549 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46685

Sequence Viewer

Length: 1614 bp
ATGCTTATGTTTACTTTCTTTGGTTGTTTTTTCCATTTGAAATGCGGTTTGTTCTTCTTTGAAATGCAGGATGAATCTGGTAACTGTGTTTATAATGAAGATGGAAAACCTCTTCTACATACAGATGGAACTGGATTCATATCTGAGGATTTGGCTTTGCTTTGTCCAAAGATAGAAGCCAAAAGAAAGTTTATGAGTGAGGAACACATGGAGGGACTTCCGGATCCTGATGAACTTGAGATTGAAATGAAAAAATCAGATCTCCGAACTCAAGAACCGCCATTGCTCATACAGTGCTGCCTATTTCACGAAGGCAATGCTTATAAAGGAACTTTGCTTGTCAATAAGCGGCTTCCCCCGAAAACACTGCAGATTCGACCGTCAATGTGTAAAGTTGAGAAGGACCCTAAGATTTCAGATAATGAAACCATCAATTCTTTGGAAATAGTTTGCACAAGTGCTCCTCCTAGGAAAGCTTATTTGTCAAGGATTATAATTGCACTTCTAGTGTATGGAGGTGTACCGAAAGACTTCTTTATGAAGATACTTGAAAATGCTTTAGAAGATGCTCATCGTGTTATCGGGAAGACACGTGCAGCGCTCAAAGTTGCTGAGAAGTATGGTGAGATTGATGACAATTTCTTGGGAGCAACAATGATCAGACTTGGTATTCCTCTAGAAGAATCATATTTGCAATATCGTCTGTCACACTTAATGCGTGTGCAGGAAAGCACTGGTCTTAGAAAAGGTAGACTTCATATTCCTGACTCTTATGTGTTGATGGGGACAGCTGATCCAACAGGGATTCTGGAAAGAGATGAAGTCTGCGTTATCCTTAAGGACGGACAAATGTCGGGGAAGGTACTTGTGTACCGGTATCCTGGTTTACACTTCGGGGATATTAAAGTTTTGAAGGCCACCTATGTGAAGGAGTTAGAATCCATTGTGGGAGATGCCAGATATGCTATATTCTTCTCTTGCAAGGGACCACGTAATGTTGCTGATGAAATTGGTGGTGGAGATTTTGATGGTGATCTTTACTGGGTCTCAAGAAACCCTCAGCTATTGGAATGGTACAAACCAAGTGAACCTTGGAACGAAGGATCAATATCAACTCAAAAGGTTGCCAGTAATAGACCAACTGAGCTTTCCACTGAAGATCTTGAAGCTGATATGTTTAGATTGTTCTTGAAAAATAGGTTTCAACCAAGTTTTGCTATGAGTGAGGCAGCTAATAACTGGCTAGCTTGGATAGATTGGTTCTTGACTTTGGGAGATAGTAATGAGAAGAAGGACGTAATGGACAAGATACTGAGGTTGGTTGATATATACTACATCGCTCTAGATGCAGCGAAGAAAGGTGTAAAGGTTGAAGTTCCAAAAGATTTGAAGGTGTCACTTTTCCCTCATTACATGGACAAGAAAAAAGAAGAAGAAACTTACATTTCATCTTCGATTTTGGGAGAAATTTATGATGAAGTTGATAAATGTCAAGCAAAAATAATTCTTCTCAAAGAAATCAAGAAACTTCCTATTTTTTTGATATTAATCAAGTCCCCGAACTCTGCTTGGCCAAATGGAAGAAACGTTATGGACGGTACAGGACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

537

Amino Acids

61.05

Weight (kDa)

5.69

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP PF05183 31 - 494 9.4e-85 RNA dependent RNA polymerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 93, 324, 494
AccI GTMKAC 1 cut(s) 751
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 3 cut(s) 45, 278, 349
AclI AACGTT 1 cut(s) 1587
AclWI GGATC 4 cut(s) 218, 231, 788, 1111
AcoI YGGCCR 1 cut(s) 1571
AcsI RAATTY 1 cut(s) 1467
AcuI CTGAAG 1 cut(s) 1176
AcvI CACGTG 1 cut(s) 593
AfaI GTAC 5 cut(s) 522, 864, 872, 1076, 1600
AfeI AGCGCT 1 cut(s) 600
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 590
AgeI ACCGGT 1 cut(s) 873
AjnI CCWGG 1 cut(s) 880
AjuI GAANNNNNNNTTGG 2 cut(s) 1132, 1164
AleI CACNNNNGTG 1 cut(s) 923
AluBI AGCT 7 cut(s) 476, 791, 1063, 1147, 1169, 1232, 1247
AluI AGCT 7 cut(s) 476, 791, 1063, 1147, 1169, 1232, 1247
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 1051
AlwI GGATC 4 cut(s) 218, 231, 788, 1111
Aor13HI TCCGGA 1 cut(s) 220
Aor51HI AGCGCT 1 cut(s) 600
AoxI GGCC 2 cut(s) 915, 1571
ApeKI GCWGC 4 cut(s) 297, 596, 1229, 1349
ApoI RAATTY 1 cut(s) 1467
AseI ATTAAT 1 cut(s) 1547
AsiGI ACCGGT 1 cut(s) 873
Asp700I GAANNNNTTC 1 cut(s) 530
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 2 cut(s) 403, 986
AsuHPI GGTGA 2 cut(s) 635, 1043
AsuNHI GCTAGC 1 cut(s) 1243
AvaII GGWCC 2 cut(s) 403, 986
AvrII CCTAGG 1 cut(s) 467
BaeI ACNNNNGTAYC 6 cut(s) 854, 854, 887, 887, 1301, 1334
BalI TGGCCA 1 cut(s) 1573
BamHI GGATCC 1 cut(s) 223
BbrPI CACGTG 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 463
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 4 cut(s) 284, 608, 1241, 1361
BccI CCATC 5 cut(s) 95, 119, 437, 775, 1022
BcgI CGANNNNNNTGC 4 cut(s) 299, 333, 349, 383
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 888
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 1051
BfaI CTAG 5 cut(s) 468, 506, 677, 1244, 1343
BfmI CTRYAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 602
BfrI CTTAAG 1 cut(s) 836
BfuI GTATCC 1 cut(s) 888
BglII AGATCT 2 cut(s) 259, 1159
BisI GCNGC 5 cut(s) 298, 350, 597, 1230, 1350
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 5 cut(s) 299, 351, 598, 1231, 1351
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 2 cut(s) 403, 986
BmgT120I GGNCC 2 cut(s) 403, 986
BmiI GGNNCC 3 cut(s) 225, 405, 987
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 1051
BmsI GCATC 3 cut(s) 556, 943, 1336
BmtI GCTAGC 1 cut(s) 1247
BmuI ACTGGG 1 cut(s) 1051
BoxI GACNNNNGTC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 3 cut(s) 255, 257, 1033
BsaAI YACGTR 2 cut(s) 593, 992
BsaBI GATNNNNATC 5 cut(s) 139, 570, 1032, 1108, 1547
BsaI GGTCTC 1 cut(s) 1051
BsaJI CCNNGG 2 cut(s) 467, 1091
BsaWI WCCGGW 2 cut(s) 220, 873
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bse118I RCCGGY 1 cut(s) 873
Bse1I ACTGG 5 cut(s) 136, 739, 1046, 1128, 1244
Bse3DI GCAATG 2 cut(s) 281, 322
Bse8I GATNNNNATC 5 cut(s) 139, 570, 1032, 1108, 1547
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 467, 1091
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 5 cut(s) 139, 570, 1032, 1108, 1547
BseMI GCAATG 2 cut(s) 281, 322
BseMII CTCAG 5 cut(s) 135, 603, 1073, 1134, 1304
BseNI ACTGG 5 cut(s) 136, 739, 1046, 1128, 1244
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 4 cut(s) 284, 608, 1241, 1361
BsgI GTGCAG 2 cut(s) 615, 743
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 2 cut(s) 917, 1573
BshTI ACCGGT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 2 cut(s) 221, 874
BslFI GGGAC 4 cut(s) 228, 799, 999, 1540
BsmAI GTCTC 1 cut(s) 1051
BsmFI GGGAC 4 cut(s) 228, 799, 999, 1540
BsnI GGCC 2 cut(s) 917, 1573
Bso31I GGTCTC 1 cut(s) 1051
Bsp1286I GDGCHC 1 cut(s) 463
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
BspACI CCGC 3 cut(s) 45, 278, 349
BspANI GGCC 2 cut(s) 917, 1573
BspCNI CTCAG 5 cut(s) 136, 604, 1072, 1135, 1305
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 225, 405, 987
BspMAI CTGCAG 1 cut(s) 372
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 4 cut(s) 218, 231, 788, 1111
BspTI CTTAAG 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 1051
BsrDI GCAATG 2 cut(s) 281, 322
BsrFI RCCGGY 1 cut(s) 873
BsrI ACTGG 5 cut(s) 136, 739, 1046, 1128, 1244
BssAI RCCGGY 1 cut(s) 873
BssECI CCNNGG 2 cut(s) 467, 1091
BssMI GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
BssT1I CCWWGG 2 cut(s) 467, 1091
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 4 cut(s) 86, 294, 381, 1598
Bst6I CTCTTC 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 836
BstBAI YACGTR 2 cut(s) 593, 992
BstC8I GCNNGC 1 cut(s) 1245
BstDEI CTNAG 7 cut(s) 144, 408, 612, 740, 1059, 1143, 1313
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 7 cut(s) 226, 262, 660, 796, 1036, 1106, 1162
BstMAI GTCTC 1 cut(s) 1051
BstMBI GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 2 cut(s) 962, 1346
BstNI CCWGG 1 cut(s) 882
BstPAI GACNNNNGTC 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 880
BstSFI CTRYAG 1 cut(s) 368
BstV1I GCAGC 4 cut(s) 284, 608, 1241, 1361
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 3 cut(s) 223, 259, 1159
BstYI RGATCY 3 cut(s) 223, 259, 1159
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 2 cut(s) 917, 1573
BtgZI GCGATG 1 cut(s) 1321
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 4 cut(s) 299, 365, 732, 1152
Cac8I GCNNGC 1 cut(s) 1245
CfoI GCGC 1 cut(s) 601
Cfr10I RCCGGY 1 cut(s) 873
Cfr13I GGNCC 2 cut(s) 403, 986
Csp6I GTAC 5 cut(s) 521, 863, 871, 1075, 1599
CspAI ACCGGT 1 cut(s) 873
CviAII CATG 2 cut(s) 208, 1414
CviQI GTAC 5 cut(s) 521, 863, 871, 1075, 1599
DdeI CTNAG 7 cut(s) 144, 408, 612, 740, 1059, 1143, 1313
DpnI GATC 7 cut(s) 225, 261, 659, 795, 1035, 1105, 1161
DpnII GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
EaeI YGGCCR 1 cut(s) 1571
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 467, 1091
Eco31I GGTCTC 1 cut(s) 1051
Eco47I GGWCC 2 cut(s) 403, 986
Eco47III AGCGCT 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 1176
Eco72I CACGTG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 2 cut(s) 467, 1091
ErhI CCWWGG 2 cut(s) 467, 1091
FaeI CATG 2 cut(s) 211, 1417
FalI AAGNNNNNCTT 4 cut(s) 738, 770, 1075, 1107
FaqI GGGAC 4 cut(s) 228, 799, 999, 1540
FatI CATG 2 cut(s) 207, 1413
FbaI TGATCA 1 cut(s) 657
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 298, 350, 597, 1230, 1350
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 5 cut(s) 298, 350, 597, 1230, 1350
FspBI CTAG 5 cut(s) 468, 506, 677, 1244, 1343
GlaI GCGC 1 cut(s) 600
GluI GCNGC 5 cut(s) 298, 350, 597, 1230, 1350
HaeII RGCGCY 1 cut(s) 602
HaeIII GGCC 2 cut(s) 917, 1573
HapII CCGG 2 cut(s) 221, 874
HhaI GCGC 1 cut(s) 601
Hin1II CATG 2 cut(s) 211, 1417
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 7 cut(s) 74, 135, 373, 683, 767, 805, 938
HpaII CCGG 2 cut(s) 221, 874
HphI GGTGA 2 cut(s) 635, 1043
Hpy166II GTNNAC 6 cut(s) 12, 521, 752, 871, 887, 1088
Hpy188I TCNGA 5 cut(s) 145, 259, 266, 418, 662
Hpy8I GTNNAC 6 cut(s) 12, 521, 752, 871, 887, 1088
HpyAV CCTTC 8 cut(s) 305, 394, 853, 907, 922, 1094, 1285, 1384
HpyCH4III ACNGT 4 cut(s) 86, 294, 381, 1598
HpyCH4IV ACGT 4 cut(s) 592, 991, 1296, 1587
HpyCH4V TGCA 9 cut(s) 67, 370, 453, 500, 596, 694, 724, 981, 1349
HpyF10VI GCNNNNNNNGC 2 cut(s) 962, 1346
HpyF3I CTNAG 7 cut(s) 144, 408, 612, 740, 1059, 1143, 1313
HpySE526I ACGT 4 cut(s) 592, 991, 1296, 1587
Hsp92II CATG 2 cut(s) 211, 1417
HspAI GCGC 1 cut(s) 599
Kpn2I TCCGGA 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
LmnI GCTCC 2 cut(s) 466, 647
Lsp1109I GCAGC 4 cut(s) 284, 608, 1241, 1361
LweI GCATC 3 cut(s) 556, 943, 1336
MaeI CTAG 5 cut(s) 468, 506, 677, 1244, 1343
MaeII ACGT 4 cut(s) 592, 991, 1296, 1587
MaeIII GTNAC 3 cut(s) 80, 705, 1395
MalI GATC 7 cut(s) 225, 261, 659, 795, 1035, 1105, 1161
MboI GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
MflI RGATCY 3 cut(s) 223, 259, 1159
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 1573
MluCI AATT 6 cut(s) 433, 495, 637, 1008, 1467, 1503
MluNI TGGCCA 1 cut(s) 1573
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 1 cut(s) 821
Mox20I TGGCCA 1 cut(s) 1573
MroI TCCGGA 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 530
MscI TGGCCA 1 cut(s) 1573
MseI TTAA 4 cut(s) 713, 837, 903, 1547
MslI CAYNNNNRTG 2 cut(s) 123, 923
Msp20I TGGCCA 1 cut(s) 1573
MspA1I CMGCKG 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 2 cut(s) 221, 874
MspR9I CCNGG 1 cut(s) 882
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 2 cut(s) 962, 1346
NdeII GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
NheI GCTAGC 1 cut(s) 1243
NlaIII CATG 2 cut(s) 211, 1417
NlaIV GGNNCC 3 cut(s) 225, 405, 987
NmuCI GTSAC 2 cut(s) 705, 1395
OliI CACNNNNGTG 1 cut(s) 923
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 6 cut(s) 74, 135, 373, 683, 805, 938
PinAI ACCGGT 1 cut(s) 873
PkrI GCNGC 5 cut(s) 299, 351, 598, 1231, 1351
PleI GAGTC 1 cut(s) 761
PmaCI CACGTG 1 cut(s) 593
PmlI CACGTG 1 cut(s) 593
PpsI GAGTC 1 cut(s) 761
Ppu21I YACGTR 2 cut(s) 593, 992
PpuMI RGGWCCY 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 850
PshBI ATTAAT 1 cut(s) 1547
PsiI TTATAA 3 cut(s) 93, 324, 494
Psp1406I AACGTT 1 cut(s) 1587
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 880
PspCI CACGTG 1 cut(s) 593
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 3 cut(s) 225, 405, 987
PspPI GGNCC 2 cut(s) 403, 986
PspPPI RGGWCCY 1 cut(s) 403
PstI CTGCAG 1 cut(s) 372
PsuI RGATCY 3 cut(s) 223, 259, 1159
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 5 cut(s) 522, 864, 872, 1076, 1600
RsaNI GTAC 5 cut(s) 521, 863, 871, 1075, 1599
RseI CAYNNNNRTG 2 cut(s) 123, 923
SaqAI TTAA 4 cut(s) 713, 837, 903, 1547
SatI GCNGC 5 cut(s) 298, 350, 597, 1230, 1350
Sau3AI GATC 7 cut(s) 223, 259, 657, 793, 1033, 1103, 1159
Sau96I GGNCC 2 cut(s) 403, 986
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 3 cut(s) 556, 943, 1336
SfcI CTRYAG 1 cut(s) 368
SinI GGWCC 2 cut(s) 403, 986
SmiMI CAYNNNNRTG 2 cut(s) 123, 923
SmlI CTYRAG 4 cut(s) 236, 270, 836, 1048
SmoI CTYRAG 4 cut(s) 236, 270, 836, 1048
Sse9I AATT 6 cut(s) 433, 495, 637, 1008, 1467, 1503
SsiI CCGC 3 cut(s) 45, 278, 349
SspMI CTAG 5 cut(s) 468, 506, 677, 1244, 1343
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 2 cut(s) 467, 1091
TaaI ACNGT 4 cut(s) 86, 294, 381, 1598
TaiI ACGT 4 cut(s) 595, 994, 1299, 1590
TaqI TCGA 2 cut(s) 376, 1454
TasI AATT 6 cut(s) 433, 495, 637, 1008, 1467, 1503
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 6 cut(s) 74, 135, 373, 683, 805, 938
Tru1I TTAA 4 cut(s) 713, 837, 903, 1547
Tru9I TTAA 4 cut(s) 713, 837, 903, 1547
TscAI CASTG 4 cut(s) 299, 372, 739, 1159
TseFI GTSAC 2 cut(s) 705, 1395
TseI GCWGC 4 cut(s) 297, 596, 1229, 1349
Tsp45I GTSAC 2 cut(s) 705, 1395
TspGWI ACGGA 1 cut(s) 858
TspRI CASTG 4 cut(s) 299, 372, 739, 1159
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 2 cut(s) 403, 986
VspI ATTAAT 1 cut(s) 1547
XapI RAATTY 1 cut(s) 1467
XbaI TCTAGA 2 cut(s) 676, 1342
XcmI CCANNNNNNNNNTGG 2 cut(s) 436, 1089
XmaJI CCTAGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 5 cut(s) 468, 506, 677, 1244, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.