RH2BG063900
ERF Family

Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000505
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG063900.1

Sequence Viewer

Length: 2349 bp
ATGAAAGAGTACAAAAGATCCCTGGGCCCCTATCTACAAAATGAAAGAAGAACTCTCCTACAGAAACTATGTCAAGATGACAATGTTTTGATTGTGAAGTTTGATGAAGAAGGGACTCAGACAGGTTCTAGGACTTCTTATGATAATGACTATTCTACGTATATGAAGGTTGAGAGACAAGGGATTTTTGTTGGCTTGCGGCGCTATCGTTTCTTTGGTTTTAAAGATGGTGGTAAAAGAGATAAAATCAGAAGTCCCACGTCATCACCCGTAAAATGTTATTTTGTTCGTGTGAGCTCTGATGCAGCAATAGACAGGGATGTAGGTTATTGGTTATCTAACAGAACAATTCATGAAGGAAGACGTCTAATCATGCATGTTGATACTCTGCCAAGTGTGGACAAGGTCATGGCTAGGTTGCCACTCATTTTTTCTAAGACAACGACCTTGGAAGTAGATTGGTCACTTGTGAAAGTTGAAGAAATTGTTGACGTCAACTGTTGCGATGAATCTGGTAACTGTGTTTATAATGAAGATGGAAAACCTCTTCTACATACAGATGGAACTGGATTCATATCTGAGGATTTGGCTTTGCTTTGTCCAAAGATAGAAGCCAAAAGAAAGTTTATAAGTGAGGAACACATGGAGGGACTTCCGGATCCTGATGAACTTGAGATTGAAATGAAAAAATCAGATCTCCGAACTCAAGAACCGCCATTGCTCATACAGTGCCGCCTATTTCACGAAGGCAATGCTTATAAAGGAACTTTGCTTGTCAATAAGCGGCTTCCCCCGAAAACACTGCAGATTCGACCGTCAATGCGTAAAGTTGAGAAGGACCCTAAGATTTCAGATAATGAAACCATCAATTCTTTGGAAATAGTTTGCACAAGTGCTCCTCCTAGGAAAGCTTATTTGTCAAGGATTATAATTGCACTTCTAGTGCATGGAGGTGTACCGAAAGACTTCTTTATGAAGATACTTGACAATGCTTTAGAAGATGCTCATCGTGTTATCGGGAAGACACGTGCTGCGCTCAAAGTTGCTGAGAAGTATGGTGAGATCGATGACAATTTCTTGGGGAAATTAATGATCTCATTTGGAATACCTCTAGAAGAATCATACTTGCAGTATCGTCTCTCAGTCCTAATGAAAGAGGAAAACAACAGTCTTAGAAAAGGGAAACTTTATATTCCTGATTCATATAATTTGATGGGGACAGCTGATCCAACAGGGACTTTAAAGAAGGATGAAGTCTGTGTTATCCTGAAGGATGGACAACTGTCAGGGAAGGTACTAGTGTACAGATATCCGGGTTTACACTTTGGGGATATTCATGTTCTAAAGGCGACCTATGTGAAGGAGTTAGAGTCTTTTGTTGGAAATGCCAAATACGGTATATTCTTCTCTTGCAAAGGTCCACGTTCCATTGCTGATGAAATGGGTGGTGGAGATTTTGATGGTGATCTATACTGGGTCTCAAGAAATCCTCAGCTATTGGAGTGGTACAAACCAAGTGAACCTTGGATTGAAGCTTCAATATCAACCCAAAAAGTTCCCAGTAGGAGTCCATCTGACTATTCGCCTGAAGATCTAGAAGATCTTCTGTTTAGATCATTCTTGACAACTAGGTTTGAACCAAGTTTCGCTGCGAGTGAGGCAGCTGCTAATTGGCTAGCCTGGATGGATCGATTCTTGACTTTGGGAGAGAGTGACATTGACGAAAAGAATAATACGAAGGAGAAGATGCTGCAACTAATTGACTTATACTACACAGCTCTAGATGCACCAAAGAAAGGTGTAAAGGTTGTGGTCCCAAAAGAATTGAAGGTCCCATGTTTCCCTCATTACATGGGAAAGAACAATTCTTACCCTTCAACTTCCATTTTGGGATTAATTTATGACAGGGTAGATGAGCATCAAACAGAAGACCGTTCTCTCAAAGAAGTCGAGAAACTTCCTGCTTTTGATGTTAATGAAGTCCCTGATGCCTGCTTCGACAAATGGGAGGAACTACACCGACAGTACAGGAGTGAGATGGCCGCTGCTATGGACGATACTGATAAACAGAGCAGAAATCAGTCTGCTGATGTGGTCATTAGGAAATATAAAAAGATTCTGTACGAGGCTAATGACTTTGAGGAGAGTAGAAGGCCGATCGATGAGATATATAACGAGGCACAAGCTATATATCAATTGTGTTATGACCATGCGAGGAGGGTAGGAAGTGTGAAGGCGTGTTCCTTTGCATGGAGAGTTGCAGGTAAAGCTCTGTGCCAGCTTCACGCCAAGAACACGAATGAAAGGTGTTGTACAATAGTATCCTCTGTTTTGAAGGAGATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RdRP

Protein Analysis

782

Amino Acids

89.38

Weight (kDa)

6.08

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP PF05183 11 - 637 3.6e-105 RNA dependent RNA polymerase
RdRP_head PF26253 660 - 766 3.5e-13 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19910 AT2G19910 AT2G19920 AT2G19920 AT2G19920 AT2G19920 AT2G19930 AT2G19930 AT2G19930
fragaria_vesca FvH4_1g05980 FvH4_1g05990 FvH4_1g05990 FvH4_1g09718
malus_domestica MD02G1064400.v1.1 MD15G1195300.v1.1 MD15G1195400.v1.1
prunus_persica Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1 Prupe.7G221200_v2.0.a1
pyrus_communis pycom02g05070 pycom15g17460
rosa_chinensis RchiOBHm_Chr2g0091671 RchiOBHm_Chr2g0091681 RchiOBHm_Chr2g0091691 RchiOBHm_Chr2g0091701 RchiOBHm_Chr2g0091711 RchiOBHm_Chr2g0091721 RchiOBHm_Chr2g0091731 RchiOBHm_Chr5g0014401
rosa_laevigata RLG00000013772 RLG00000016242 RLG00000016244 RLG00000016245 RLG00000016246 RLG00000032105
rosa_multiflora Rmu_co8374041.1_g000001 Rmu_co8478121.1_g000001 Rmu_sc0000897.1_g000005 Rmu_sc0000897.1_g000009
rosa_roxburghii Rroxscaffold_1G00062180 Rroxscaffold_1G00062190 Rroxscaffold_1G00068800 Rroxscaffold_2G00149790 Rroxscaffold_2G00149800 Rroxscaffold_2G00149810
rosa_rugosa Rorug02G0019600 Rorug02G0019700 Rorug02G0019800 Rorug02G0019900 Rorug02G0019900 Rorug02G0020000 Rorug02G0020000 Rorug02G0020100 Rorug02G0020100 Rorug02G0020200 Rorug05G0017800
rosa_samantha Rh2AG064700 Rh2AG064800 Rh2AG064900 Rh2BG063800 Rh2BG063900 Rh2BG064000 Rh2BG064100 Rh2CG065500 Rh2CG065600 Rh2CG065700 Rh2DG063900 Rh2DG064000 Rh2DG064100 Rh2DG064200 Rh2DG381700 Rh5AG056700 Rh5AG056800 Rh5AG056900 Rh5AG112600 Rh5BG109300 Rh5CG063800 Rh5CG121100 Rh5DG053100 Rh5DG108300 Rh6CG100100
rosa_wichuraiana Rw2G005560 Rw2G005580 Rw2G005590 Rw5G005370 Rw5G009770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 528, 629, 759, 929
AatII GACGTC 2 cut(s) 367, 495
Acc36I ACCTGC 1 cut(s) 2252
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 5 cut(s) 199, 713, 733, 784, 2043
AclWI GGATC 5 cut(s) 12, 653, 666, 1220, 1695
AcoI YGGCCR 1 cut(s) 2040
AcuI CTGAAG 2 cut(s) 1289, 1608
AcvI CACGTG 1 cut(s) 1028
AcyI GRCGYC 2 cut(s) 364, 492
AfaI GTAC 8 cut(s) 11, 957, 1296, 1304, 1508, 2027, 2123, 2314
AfiI CCNNNNNNNGG 2 cut(s) 1796, 2250
AflIII ACRYGT 1 cut(s) 1025
AgsI TTSAA 8 cut(s) 479, 680, 1532, 1539, 1637, 1828, 1878, 2335
AhlI ACTAGT 1 cut(s) 1297
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 2 cut(s) 21, 1679
Alw21I GWGCWC 2 cut(s) 299, 898
Alw26I GTCTC 3 cut(s) 169, 1142, 1483
AlwI GGATC 5 cut(s) 12, 653, 666, 1220, 1695
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 3 cut(s) 25, 2040, 2153
ApaI GGGCCC 1 cut(s) 29
ApeKI GCWGC 7 cut(s) 305, 1031, 1649, 1661, 1664, 1750, 2045
AseI ATTAAT 2 cut(s) 1088, 1895
Asp700I GAANNNNTTC 2 cut(s) 965, 1602
AspA2I CCTAGG 1 cut(s) 902
AspLEI GCGC 2 cut(s) 204, 1036
AspS9I GGNCC 6 cut(s) 25, 26, 838, 1418, 1813, 1831
AsuC2I CCSGG 1 cut(s) 1314
AsuHPI GGTGA 3 cut(s) 258, 1070, 1475
AsuNHI GCTAGC 1 cut(s) 1675
AvaII GGWCC 4 cut(s) 838, 1418, 1813, 1831
AvrII CCTAGG 1 cut(s) 902
BaeGI GKGCMC 1 cut(s) 29
BaeI ACNNNNGTAYC 4 cut(s) 1286, 1319, 2304, 2337
BamHI GGATCC 1 cut(s) 658
BanII GRGCYC 2 cut(s) 29, 299
BbrPI CACGTG 1 cut(s) 1028
BbsI GAAGAC 3 cut(s) 367, 1028, 1935
Bbv12I GWGCWC 2 cut(s) 299, 898
BbvCI CCTCAGC 1 cut(s) 1491
BbvI GCAGC 7 cut(s) 317, 1018, 1636, 1651, 1673, 1737, 2032
BcgI CGANNNNNNTGC 4 cut(s) 734, 768, 784, 818
BciT130I CCWGG 2 cut(s) 23, 1681
BciVI GTATCC 1 cut(s) 2332
BcnI CCSGG 1 cut(s) 1314
BcoDI GTCTC 3 cut(s) 169, 1142, 1483
BcuI ACTAGT 1 cut(s) 1297
BfmI CTRYAG 2 cut(s) 59, 803
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 2252
BfuI GTATCC 1 cut(s) 2332
BglII AGATCT 3 cut(s) 694, 1591, 1600
BlnI CCTAGG 1 cut(s) 902
Bme1390I CCNGG 3 cut(s) 23, 1314, 1681
Bme18I GGWCC 4 cut(s) 838, 1418, 1813, 1831
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 6 cut(s) 25, 26, 838, 1418, 1813, 1831
BmiI GGNNCC 6 cut(s) 27, 28, 660, 840, 1815, 1833
BmrFI CCNGG 3 cut(s) 23, 1314, 1681
BmrI ACTGGG 2 cut(s) 1483, 1554
BmsI GCATC 6 cut(s) 292, 991, 1737, 1774, 1927, 1978
BmtI GCTAGC 1 cut(s) 1679
BmuI ACTGGG 2 cut(s) 1483, 1554
BoxI GACNNNNGTC 1 cut(s) 1282
BpiI GAAGAC 3 cut(s) 367, 1028, 1935
Bpu10I CCTNAGC 1 cut(s) 1491
BpuEI CTTGAG 3 cut(s) 690, 692, 1465
BpuMI CCSGG 1 cut(s) 1314
Bsa29I ATCGAT 3 cut(s) 1065, 1690, 2160
BsaAI YACGTR 2 cut(s) 159, 1028
BsaBI GATNNNNATC 4 cut(s) 574, 1005, 1464, 1917
BsaHI GRCGYC 2 cut(s) 364, 492
BsaI GGTCTC 1 cut(s) 1483
BsaJI CCNNGG 5 cut(s) 21, 22, 447, 902, 1523
BsaWI WCCGGW 1 cut(s) 655
BsaXI ACNNNNNCTCC 5 cut(s) 880, 910, 1355, 1385, 2330
Bsc4I CCNNNNNNNGG 2 cut(s) 1796, 2250
Bse1I ACTGG 3 cut(s) 571, 1478, 1560
Bse3DI GCAATG 3 cut(s) 716, 757, 1428
Bse8I GATNNNNATC 4 cut(s) 574, 1005, 1464, 1917
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 2 cut(s) 23, 1681
BseCI ATCGAT 3 cut(s) 1065, 1690, 2160
BseDI CCNNGG 5 cut(s) 21, 22, 447, 902, 1523
BseGI GGATG 4 cut(s) 325, 1255, 1279, 1689
BseJI GATNNNNATC 4 cut(s) 574, 1005, 1464, 1917
BseLI CCNNNNNNNGG 2 cut(s) 1796, 2250
BseMI GCAATG 3 cut(s) 716, 757, 1428
BseMII CTCAG 5 cut(s) 131, 570, 1038, 1155, 1505
BseNI ACTGG 3 cut(s) 571, 1478, 1560
BseRI GAGGAG 3 cut(s) 888, 2156, 2230
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 7 cut(s) 317, 1018, 1636, 1651, 1673, 1737, 2032
Bsh1285I CGRYCG 2 cut(s) 815, 2160
BshFI GGCC 3 cut(s) 27, 2042, 2155
BshVI ATCGAT 3 cut(s) 1065, 1690, 2160
BsiEI CGRYCG 2 cut(s) 815, 2160
BsiHKAI GWGCWC 2 cut(s) 299, 898
BsiSI CCGG 2 cut(s) 656, 1313
BslFI GGGAC 8 cut(s) 127, 240, 663, 1231, 1249, 1799, 1817, 1967
BslI CCNNNNNNNGG 2 cut(s) 1796, 2250
BsmAI GTCTC 3 cut(s) 169, 1142, 1483
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 8 cut(s) 127, 240, 663, 1231, 1249, 1799, 1817, 1967
BsnI GGCC 3 cut(s) 27, 2042, 2155
Bso31I GGTCTC 1 cut(s) 1483
Bsp120I GGGCCC 1 cut(s) 25
Bsp1286I GDGCHC 3 cut(s) 29, 299, 898
Bsp13I TCCGGA 1 cut(s) 655
Bsp1407I TGTACA 2 cut(s) 1302, 2312
BspACI CCGC 5 cut(s) 199, 713, 733, 784, 2043
BspANI GGCC 3 cut(s) 27, 2042, 2155
BspCNI CTCAG 5 cut(s) 130, 571, 1039, 1154, 1504
BspDI ATCGAT 3 cut(s) 1065, 1690, 2160
BspEI TCCGGA 1 cut(s) 655
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 6 cut(s) 27, 28, 660, 840, 1815, 1833
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 1 cut(s) 2252
BspOI GCTAGC 1 cut(s) 1679
BspPI GGATC 5 cut(s) 12, 653, 666, 1220, 1695
BspTNI GGTCTC 1 cut(s) 1483
BsrDI GCAATG 3 cut(s) 716, 757, 1428
BsrGI TGTACA 2 cut(s) 1302, 2312
BsrI ACTGG 3 cut(s) 571, 1478, 1560
BssECI CCNNGG 5 cut(s) 21, 22, 447, 902, 1523
BssNI GRCGYC 2 cut(s) 364, 492
BssT1I CCWWGG 3 cut(s) 447, 902, 1523
Bst2UI CCWGG 2 cut(s) 23, 1681
Bst4CI ACNGT 9 cut(s) 500, 521, 729, 816, 1169, 1284, 1397, 1934, 2025
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 2 cut(s) 364, 492
BstAUI TGTACA 2 cut(s) 1302, 2312
BstBAI YACGTR 2 cut(s) 159, 1028
BstC8I GCNNGC 4 cut(s) 197, 1677, 1993, 2279
BstDEI CTNAG 8 cut(s) 117, 435, 579, 843, 1047, 1141, 1172, 1491
BstF5I GGATG 4 cut(s) 325, 1255, 1279, 1689
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 204, 1036
BstMAI GTCTC 3 cut(s) 169, 1142, 1483
BstMCI CGRYCG 2 cut(s) 815, 2160
BstMWI GCNNNNNNNGC 4 cut(s) 201, 1658, 1784, 2267
BstNI CCWGG 2 cut(s) 23, 1681
BstNSI RCATGY 1 cut(s) 380
BstPAI GACNNNNGTC 1 cut(s) 1282
BstSCI CCNGG 3 cut(s) 21, 1312, 1679
BstSFI CTRYAG 2 cut(s) 59, 803
BstSLI GKGCMC 1 cut(s) 29
BstSNI TACGTA 1 cut(s) 159
BstV1I GCAGC 7 cut(s) 317, 1018, 1636, 1651, 1673, 1737, 2032
BstV2I GAAGAC 3 cut(s) 367, 1028, 1935
BstX2I RGATCY 5 cut(s) 17, 658, 694, 1591, 1600
BstYI RGATCY 5 cut(s) 17, 658, 694, 1591, 1600
Bsu15I ATCGAT 3 cut(s) 1065, 1690, 2160
BsuI GTATCC 1 cut(s) 2332
BsuRI GGCC 3 cut(s) 27, 2042, 2155
BsuTUI ATCGAT 3 cut(s) 1065, 1690, 2160
BtgZI GCGATG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 4 cut(s) 325, 1255, 1279, 1689
BtsI GCAGTG 1 cut(s) 800
BtsIMutI CAGTG 2 cut(s) 734, 800
BveI ACCTGC 1 cut(s) 2252
Cac8I GCNNGC 4 cut(s) 197, 1677, 1993, 2279
CciI TCATGA 1 cut(s) 352
CfoI GCGC 2 cut(s) 204, 1036
Cfr13I GGNCC 6 cut(s) 25, 26, 838, 1418, 1813, 1831
ClaI ATCGAT 3 cut(s) 1065, 1690, 2160
Csp6I GTAC 8 cut(s) 10, 956, 1295, 1303, 1507, 2026, 2122, 2313
CviQI GTAC 8 cut(s) 10, 956, 1295, 1303, 1507, 2026, 2122, 2313
DdeI CTNAG 8 cut(s) 117, 435, 579, 843, 1047, 1141, 1172, 1491
DraI TTTAAA 2 cut(s) 223, 1242
EaeI YGGCCR 1 cut(s) 2040
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 297
Eco105I TACGTA 1 cut(s) 159
Eco130I CCWWGG 3 cut(s) 447, 902, 1523
Eco24I GRGCYC 2 cut(s) 29, 299
Eco31I GGTCTC 1 cut(s) 1483
Eco32I GATATC 1 cut(s) 1310
Eco47I GGWCC 4 cut(s) 838, 1418, 1813, 1831
Eco53kI GAGCTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 1289, 1608
Eco72I CACGTG 1 cut(s) 1028
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 3 cut(s) 26, 838, 1831
EcoRII CCWGG 2 cut(s) 21, 1679
EcoRV GATATC 1 cut(s) 1310
EcoT14I CCWWGG 3 cut(s) 447, 902, 1523
EcoT22I ATGCAT 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 29, 299
ErhI CCWWGG 3 cut(s) 447, 902, 1523
Esp3I CGTCTC 1 cut(s) 1142
FalI AAGNNNNNCTT 4 cut(s) 1170, 1202, 1507, 1539
FaqI GGGAC 8 cut(s) 127, 240, 663, 1231, 1249, 1799, 1817, 1967
FokI GGATG 4 cut(s) 332, 1262, 1286, 1696
FriOI GRGCYC 2 cut(s) 29, 299
GlaI GCGC 2 cut(s) 203, 1035
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 3 cut(s) 27, 2042, 2155
HapII CCGG 2 cut(s) 656, 1313
HhaI GCGC 2 cut(s) 204, 1036
Hin1I GRCGYC 2 cut(s) 364, 492
Hin6I GCGC 2 cut(s) 202, 1034
HinP1I GCGC 2 cut(s) 202, 1034
HincII GTYRAC 2 cut(s) 490, 496
HindII GTYRAC 2 cut(s) 490, 496
HindIII AAGCTT 2 cut(s) 909, 1533
HpaII CCGG 2 cut(s) 656, 1313
HphI GGTGA 3 cut(s) 258, 1070, 1475
Hpy166II GTNNAC 8 cut(s) 400, 490, 496, 956, 1303, 1319, 1421, 1520
Hpy188I TCNGA 8 cut(s) 120, 251, 301, 580, 694, 701, 853, 1576
Hpy8I GTNNAC 8 cut(s) 400, 490, 496, 956, 1303, 1319, 1421, 1520
HpyCH4III ACNGT 9 cut(s) 500, 521, 729, 816, 1169, 1284, 1397, 1934, 2025
HpyCH4IV ACGT 6 cut(s) 158, 260, 364, 492, 1027, 1423
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 1658, 1784, 2267
HpyF3I CTNAG 8 cut(s) 117, 435, 579, 843, 1047, 1141, 1172, 1491
HpySE526I ACGT 6 cut(s) 158, 260, 364, 492, 1027, 1423
Hsp92I GRCGYC 2 cut(s) 364, 492
HspAI GCGC 2 cut(s) 202, 1034
Kpn2I TCCGGA 1 cut(s) 655
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 7 cut(s) 317, 1018, 1636, 1651, 1673, 1737, 2032
LweI GCATC 6 cut(s) 292, 991, 1737, 1774, 1927, 1978
MaeII ACGT 6 cut(s) 158, 260, 364, 492, 1027, 1423
MaeIII GTNAC 3 cut(s) 462, 515, 1712
MfeI CAATTG 1 cut(s) 2195
MflI RGATCY 5 cut(s) 17, 658, 694, 1591, 1600
MhlI GDGCHC 3 cut(s) 29, 299, 898
MlyI GAGTC 3 cut(s) 109, 1379, 1576
MmeI TCCRAC 2 cut(s) 1253, 1360
Mph1103I ATGCAT 1 cut(s) 378
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 965, 1602
MseI TTAA 5 cut(s) 222, 1088, 1241, 1895, 1974
MslI CAYNNNNRTG 2 cut(s) 558, 951
MspA1I CMGCKG 3 cut(s) 1223, 1664, 2045
MspI CCGG 2 cut(s) 656, 1313
MspR9I CCNGG 3 cut(s) 23, 1314, 1681
MunI CAATTG 1 cut(s) 2195
MvaI CCWGG 2 cut(s) 23, 1681
MwoI GCNNNNNNNGC 4 cut(s) 201, 1658, 1784, 2267
NciI CCSGG 1 cut(s) 1314
NheI GCTAGC 1 cut(s) 1675
NlaIV GGNNCC 6 cut(s) 27, 28, 660, 840, 1815, 1833
NmuCI GTSAC 2 cut(s) 462, 1712
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 380
PagI TCATGA 1 cut(s) 352
PasI CCCWGGG 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 965, 1602
PfeI GAWTC 7 cut(s) 509, 570, 808, 1118, 1199, 1692, 2116
PflFI GACNNNGTC 1 cut(s) 404
Ple19I CGATCG 1 cut(s) 2160
PleI GAGTC 3 cut(s) 109, 1378, 1575
PmaCI CACGTG 1 cut(s) 1028
PmlI CACGTG 1 cut(s) 1028
PpsI GAGTC 3 cut(s) 109, 1378, 1575
Ppu21I YACGTR 2 cut(s) 159, 1028
PpuMI RGGWCCY 2 cut(s) 838, 1831
PshAI GACNNNNGTC 1 cut(s) 1282
PshBI ATTAAT 2 cut(s) 1088, 1895
PsiI TTATAA 4 cut(s) 528, 629, 759, 929
Psp124BI GAGCTC 1 cut(s) 299
Psp5II RGGWCCY 2 cut(s) 838, 1831
Psp6I CCWGG 2 cut(s) 21, 1679
PspCI CACGTG 1 cut(s) 1028
PspGI CCWGG 2 cut(s) 21, 1679
PspN4I GGNNCC 6 cut(s) 27, 28, 660, 840, 1815, 1833
PspOMI GGGCCC 1 cut(s) 25
PspPI GGNCC 6 cut(s) 25, 26, 838, 1418, 1813, 1831
PspPPI RGGWCCY 2 cut(s) 838, 1831
PsrI GAACNNNNNNTAC 2 cut(s) 1853, 1885
PstI CTGCAG 1 cut(s) 807
PsuI RGATCY 5 cut(s) 17, 658, 694, 1591, 1600
PsyI GACNNNGTC 1 cut(s) 404
PvuI CGATCG 1 cut(s) 2160
PvuII CAGCTG 2 cut(s) 1223, 1664
RsaI GTAC 8 cut(s) 11, 957, 1296, 1304, 1508, 2027, 2123, 2314
RsaNI GTAC 8 cut(s) 10, 956, 1295, 1303, 1507, 2026, 2122, 2313
RseI CAYNNNNRTG 2 cut(s) 558, 951
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 5 cut(s) 222, 1088, 1241, 1895, 1974
Sau96I GGNCC 6 cut(s) 25, 26, 838, 1418, 1813, 1831
SchI GAGTC 3 cut(s) 109, 1379, 1576
ScrFI CCNGG 3 cut(s) 23, 1314, 1681
SduI GDGCHC 3 cut(s) 29, 299, 898
SfaNI GCATC 6 cut(s) 292, 991, 1737, 1774, 1927, 1978
SfcI CTRYAG 2 cut(s) 59, 803
SinI GGWCC 4 cut(s) 838, 1418, 1813, 1831
SmiMI CAYNNNNRTG 2 cut(s) 558, 951
SmlI CTYRAG 3 cut(s) 671, 705, 1480
SmoI CTYRAG 3 cut(s) 671, 705, 1480
SnaBI TACGTA 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 1297
SsiI CCGC 5 cut(s) 199, 713, 733, 784, 2043
SstI GAGCTC 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 21, 1312, 1679
StyI CCWWGG 3 cut(s) 447, 902, 1523
TaaI ACNGT 9 cut(s) 500, 521, 729, 816, 1169, 1284, 1397, 1934, 2025
TaiI ACGT 6 cut(s) 161, 263, 367, 495, 1030, 1426
TaqI TCGA 6 cut(s) 811, 1065, 1690, 1950, 1998, 2160
TatI WGTACW 4 cut(s) 9, 1302, 2025, 2312
TauI GCSGC 4 cut(s) 202, 735, 787, 2045
TfiI GAWTC 7 cut(s) 509, 570, 808, 1118, 1199, 1692, 2116
Tru1I TTAA 5 cut(s) 222, 1088, 1241, 1895, 1974
Tru9I TTAA 5 cut(s) 222, 1088, 1241, 1895, 1974
TscAI CASTG 2 cut(s) 734, 807
TseFI GTSAC 2 cut(s) 462, 1712
TseI GCWGC 7 cut(s) 305, 1031, 1649, 1661, 1664, 1750, 2045
Tsp45I GTSAC 2 cut(s) 462, 1712
TspRI CASTG 2 cut(s) 734, 807
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 4 cut(s) 838, 1418, 1813, 1831
VspI ATTAAT 2 cut(s) 1088, 1895
XbaI TCTAGA 3 cut(s) 1111, 1594, 1780
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 2 cut(s) 871, 1521
XmaJI CCTAGG 1 cut(s) 902
XmnI GAANNNNTTC 2 cut(s) 965, 1602
ZraI GACGTC 2 cut(s) 365, 493
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.