Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 122 |
| AarI | CACCTGC | 1 cut(s) | 131 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 497, 839 |
| Acc36I | ACCTGC | 2 cut(s) | 131, 2561 |
| Acc65I | GGTACC | 1 cut(s) | 1414 |
| AccB1I | GGYRCC | 1 cut(s) | 1414 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1453, 2233 |
| AccBSI | CCGCTC | 1 cut(s) | 1246 |
| AccII | CGCG | 1 cut(s) | 85 |
| AciI | CCGC | 8 cut(s) | 83, 112, 428, 718, 1244, 1588, 1905, 2424 |
| AclI | AACGTT | 1 cut(s) | 470 |
| AclWI | GGATC | 5 cut(s) | 942, 955, 1175, 1292, 1679 |
| AcoI | YGGCCR | 1 cut(s) | 2421 |
| AcsI | RAATTY | 3 cut(s) | 365, 483, 1424 |
| AcuI | CTGAAG | 3 cut(s) | 1257, 1748, 2067 |
| AcvI | CACGTG | 1 cut(s) | 1487 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 43, 173, 944, 1453, 2177, 2233, 2559 |
| AflIII | ACRYGT | 3 cut(s) | 496, 927, 1484 |
| AhlI | ACTAGT | 1 cut(s) | 1756 |
| AjiI | CACGTC | 1 cut(s) | 499 |
| AjnI | CCWGG | 1 cut(s) | 319 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1821, 1853 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 351, 383 |
| Alw21I | GWGCWC | 1 cut(s) | 2456 |
| Alw26I | GTCTC | 3 cut(s) | 1043, 1601, 1942 |
| AlwI | GGATC | 5 cut(s) | 942, 955, 1175, 1292, 1679 |
| AoxI | GGCC | 4 cut(s) | 544, 813, 1220, 2421 |
| ApaI | GGGCCC | 1 cut(s) | 548 |
| ApeKI | GCWGC | 3 cut(s) | 824, 1490, 2426 |
| ApoI | RAATTY | 3 cut(s) | 365, 483, 1424 |
| AseI | ATTAAT | 3 cut(s) | 1547, 2276, 2355 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 276, 2052 |
| Asp718I | GGTACC | 1 cut(s) | 1414 |
| AspA2I | CCTAGG | 1 cut(s) | 1361 |
| AspS9I | GGNCC | 5 cut(s) | 300, 544, 545, 1877, 2212 |
| AsuC2I | CCSGG | 2 cut(s) | 952, 1773 |
| AvaII | GGWCC | 3 cut(s) | 300, 1877, 2212 |
| AvrII | CCTAGG | 1 cut(s) | 1361 |
| BaeGI | GKGCMC | 2 cut(s) | 548, 1679 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1745, 1778, 2613, 2646 |
| BamHI | GGATCC | 1 cut(s) | 947 |
| BanI | GGYRCC | 1 cut(s) | 1414 |
| BanII | GRGCYC | 1 cut(s) | 548 |
| BauI | CACGAG | 1 cut(s) | 1867 |
| BbrPI | CACGTG | 1 cut(s) | 1487 |
| BbsI | GAAGAC | 1 cut(s) | 2316 |
| Bbv12I | GWGCWC | 1 cut(s) | 2456 |
| BbvCI | CCTCAGC | 1 cut(s) | 1950 |
| BbvI | GCAGC | 3 cut(s) | 836, 1502, 2413 |
| BciT130I | CCWGG | 1 cut(s) | 321 |
| BciVI | GTATCC | 2 cut(s) | 1060, 2641 |
| BclI | TGATCA | 1 cut(s) | 157 |
| BcnI | CCSGG | 2 cut(s) | 952, 1773 |
| BcoDI | GTCTC | 3 cut(s) | 1043, 1601, 1942 |
| BcuI | ACTAGT | 1 cut(s) | 1756 |
| BfaI | CTAG | 8 cut(s) | 297, 362, 912, 1362, 1757, 2057, 2088, 2162 |
| BfmI | CTRYAG | 1 cut(s) | 578 |
| BfuAI | ACCTGC | 2 cut(s) | 131, 2561 |
| BfuI | GTATCC | 2 cut(s) | 1060, 2641 |
| BglII | AGATCT | 3 cut(s) | 418, 2050, 2059 |
| BisI | GCNGC | 7 cut(s) | 83, 429, 719, 825, 1491, 2424, 2427 |
| BlnI | CCTAGG | 1 cut(s) | 1361 |
| BlsI | GCNGC | 7 cut(s) | 84, 430, 720, 826, 1492, 2425, 2428 |
| BmcAI | AGTACT | 1 cut(s) | 1354 |
| Bme1390I | CCNGG | 3 cut(s) | 321, 952, 1773 |
| Bme18I | GGWCC | 3 cut(s) | 300, 1877, 2212 |
| BmgBI | CACGTC | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 5 cut(s) | 300, 544, 545, 1877, 2212 |
| BmiI | GGNNCC | 4 cut(s) | 546, 949, 1416, 2214 |
| BmrFI | CCNGG | 3 cut(s) | 321, 952, 1773 |
| BmrI | ACTGGG | 2 cut(s) | 1942, 2013 |
| BmsI | GCATC | 5 cut(s) | 811, 1450, 2155, 2308, 2359 |
| BmuI | ACTGGG | 2 cut(s) | 1942, 2013 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1741 |
| BpiI | GAAGAC | 1 cut(s) | 2316 |
| BpmI | CTGGAG | 2 cut(s) | 342, 420 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1950 |
| BpuEI | CTTGAG | 1 cut(s) | 1924 |
| BpuMI | CCSGG | 2 cut(s) | 952, 1773 |
| Bsa29I | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BsaAI | YACGTR | 1 cut(s) | 1487 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1096, 1923 |
| BsaI | GGTCTC | 1 cut(s) | 1942 |
| BsaJI | CCNNGG | 4 cut(s) | 1008, 1101, 1361, 1982 |
| BsaWI | WCCGGW | 1 cut(s) | 1417 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 1339, 1369, 2639 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 43, 173, 944, 1453, 2177, 2233, 2559 |
| Bse1I | ACTGG | 3 cut(s) | 1093, 1937, 2019 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1096, 1923 |
| BseBI | CCWGG | 1 cut(s) | 321 |
| BseCI | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BseDI | CCNNGG | 4 cut(s) | 1008, 1101, 1361, 1982 |
| BseGI | GGATG | 5 cut(s) | 529, 934, 1249, 1714, 1738 |
| BseJI | GATNNNNATC | 2 cut(s) | 1096, 1923 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 43, 173, 944, 1453, 2177, 2233, 2559 |
| BseMII | CTCAG | 4 cut(s) | 318, 1497, 1614, 1964 |
| BseNI | ACTGG | 3 cut(s) | 1093, 1937, 2019 |
| BseRI | GAGGAG | 3 cut(s) | 773, 1347, 2539 |
| BseSI | GKGCMC | 2 cut(s) | 548, 1679 |
| BseXI | GCAGC | 3 cut(s) | 836, 1502, 2413 |
| BsgI | GTGCAG | 3 cut(s) | 159, 656, 1509 |
| Bsh1236I | CGCG | 1 cut(s) | 85 |
| BshFI | GGCC | 4 cut(s) | 546, 815, 1222, 2423 |
| BshNI | GGYRCC | 1 cut(s) | 1414 |
| BshVI | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2456 |
| BsiSI | CCGG | 3 cut(s) | 951, 1418, 1772 |
| BslFI | GGGAC | 6 cut(s) | 503, 1185, 1708, 2180, 2198, 2348 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 43, 173, 944, 1453, 2177, 2233, 2559 |
| BsmAI | GTCTC | 3 cut(s) | 1043, 1601, 1942 |
| BsmBI | CGTCTC | 1 cut(s) | 1601 |
| BsmFI | GGGAC | 6 cut(s) | 503, 1185, 1708, 2180, 2198, 2348 |
| BsnI | GGCC | 4 cut(s) | 546, 815, 1222, 2423 |
| Bso31I | GGTCTC | 1 cut(s) | 1942 |
| Bsp120I | GGGCCC | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 3 cut(s) | 548, 1679, 2456 |
| Bsp1407I | TGTACA | 2 cut(s) | 259, 1761 |
| BspACI | CCGC | 8 cut(s) | 83, 112, 428, 718, 1244, 1588, 1905, 2424 |
| BspANI | GGCC | 4 cut(s) | 546, 815, 1222, 2423 |
| BspCNI | CTCAG | 4 cut(s) | 317, 1498, 1613, 1963 |
| BspDI | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BspFNI | CGCG | 1 cut(s) | 85 |
| BspHI | TCATGA | 1 cut(s) | 268 |
| BspLI | GGNNCC | 4 cut(s) | 546, 949, 1416, 2214 |
| BspMI | ACCTGC | 2 cut(s) | 131, 2561 |
| BspPI | GGATC | 5 cut(s) | 942, 955, 1175, 1292, 1679 |
| BspT107I | GGYRCC | 1 cut(s) | 1414 |
| BspTNI | GGTCTC | 1 cut(s) | 1942 |
| BsrBI | CCGCTC | 1 cut(s) | 1246 |
| BsrGI | TGTACA | 2 cut(s) | 259, 1761 |
| BsrI | ACTGG | 3 cut(s) | 1093, 1937, 2019 |
| BssECI | CCNNGG | 4 cut(s) | 1008, 1101, 1361, 1982 |
| BssSI | CACGAG | 1 cut(s) | 1867 |
| BssT1I | CCWWGG | 2 cut(s) | 1008, 1361 |
| Bst2BI | CACGAG | 1 cut(s) | 1867 |
| Bst2UI | CCWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 8 cut(s) | 1037, 1205, 1628, 1743, 1856, 1983, 2315, 2406 |
| Bst6I | CTCTTC | 1 cut(s) | 624 |
| BstAUI | TGTACA | 2 cut(s) | 259, 1761 |
| BstBAI | YACGTR | 1 cut(s) | 1487 |
| BstC8I | GCNNGC | 4 cut(s) | 658, 897, 2374, 2588 |
| BstDEI | CTNAG | 6 cut(s) | 304, 1229, 1506, 1600, 1631, 1950 |
| BstDSI | CCRYGG | 1 cut(s) | 1982 |
| BstEII | GGTNACC | 1 cut(s) | 32 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 171 |
| BstF5I | GGATG | 5 cut(s) | 529, 934, 1249, 1714, 1738 |
| BstFNI | CGCG | 1 cut(s) | 85 |
| BstMAI | GTCTC | 3 cut(s) | 1043, 1601, 1942 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 91, 137, 821, 2165, 2576 |
| BstNI | CCWGG | 1 cut(s) | 321 |
| BstNSI | RCATGY | 2 cut(s) | 899, 931 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1741 |
| BstPI | GGTNACC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 3 cut(s) | 319, 950, 1771 |
| BstSFI | CTRYAG | 1 cut(s) | 578 |
| BstSLI | GKGCMC | 2 cut(s) | 548, 1679 |
| BstUI | CGCG | 1 cut(s) | 85 |
| BstV1I | GCAGC | 3 cut(s) | 836, 1502, 2413 |
| BstV2I | GAAGAC | 1 cut(s) | 2316 |
| BstX2I | RGATCY | 5 cut(s) | 418, 947, 1297, 2050, 2059 |
| BstYI | RGATCY | 5 cut(s) | 418, 947, 1297, 2050, 2059 |
| Bsu15I | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BsuI | GTATCC | 2 cut(s) | 1060, 2641 |
| BsuRI | GGCC | 4 cut(s) | 546, 815, 1222, 2423 |
| BsuTUI | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| BtgI | CCRYGG | 1 cut(s) | 1982 |
| BtrI | CACGTC | 1 cut(s) | 499 |
| BtsCI | GGATG | 5 cut(s) | 529, 934, 1249, 1714, 1738 |
| BveI | ACCTGC | 2 cut(s) | 131, 2561 |
| Cac8I | GCNNGC | 4 cut(s) | 658, 897, 2374, 2588 |
| CciI | TCATGA | 1 cut(s) | 268 |
| Cfr13I | GGNCC | 5 cut(s) | 300, 544, 545, 1877, 2212 |
| ClaI | ATCGAT | 3 cut(s) | 918, 1023, 1524 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 730, 765 |
| DdeI | CTNAG | 6 cut(s) | 304, 1229, 1506, 1600, 1631, 1950 |
| DraI | TTTAAA | 1 cut(s) | 1701 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 497, 839 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 497, 839 |
| EaeI | YGGCCR | 1 cut(s) | 2421 |
| Eam1104I | CTCTTC | 1 cut(s) | 624 |
| EarI | CTCTTC | 1 cut(s) | 624 |
| Eco130I | CCWWGG | 2 cut(s) | 1008, 1361 |
| Eco24I | GRGCYC | 1 cut(s) | 548 |
| Eco31I | GGTCTC | 1 cut(s) | 1942 |
| Eco32I | GATATC | 2 cut(s) | 725, 1769 |
| Eco47I | GGWCC | 3 cut(s) | 300, 1877, 2212 |
| Eco57I | CTGAAG | 3 cut(s) | 1257, 1748, 2067 |
| Eco72I | CACGTG | 1 cut(s) | 1487 |
| Eco91I | GGTNACC | 1 cut(s) | 32 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 171 |
| EcoO109I | RGGNCCY | 3 cut(s) | 300, 544, 2212 |
| EcoO65I | GGTNACC | 1 cut(s) | 32 |
| EcoRI | GAATTC | 1 cut(s) | 365 |
| EcoRII | CCWGG | 1 cut(s) | 319 |
| EcoRV | GATATC | 2 cut(s) | 725, 1769 |
| EcoT14I | CCWWGG | 2 cut(s) | 1008, 1361 |
| EcoT22I | ATGCAT | 2 cut(s) | 897, 1407 |
| EcoT38I | GRGCYC | 1 cut(s) | 548 |
| ErhI | CCWWGG | 2 cut(s) | 1008, 1361 |
| Esp3I | CGTCTC | 1 cut(s) | 1601 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 640, 672, 785, 817 |
| FaqI | GGGAC | 6 cut(s) | 503, 1185, 1708, 2180, 2198, 2348 |
| FauNDI | CATATG | 1 cut(s) | 187 |
| FbaI | TGATCA | 1 cut(s) | 157 |
| Fnu4HI | GCNGC | 7 cut(s) | 83, 429, 719, 825, 1491, 2424, 2427 |
| FokI | GGATG | 5 cut(s) | 536, 921, 1236, 1721, 1745 |
| FriOI | GRGCYC | 1 cut(s) | 548 |
| Fsp4HI | GCNGC | 7 cut(s) | 83, 429, 719, 825, 1491, 2424, 2427 |
| FspBI | CTAG | 8 cut(s) | 297, 362, 912, 1362, 1757, 2057, 2088, 2162 |
| GluI | GCNGC | 7 cut(s) | 83, 429, 719, 825, 1491, 2424, 2427 |
| GsuI | CTGGAG | 2 cut(s) | 342, 420 |
| HaeIII | GGCC | 4 cut(s) | 546, 815, 1222, 2423 |
| HapII | CCGG | 3 cut(s) | 951, 1418, 1772 |
| HincII | GTYRAC | 1 cut(s) | 517 |
| HindII | GTYRAC | 1 cut(s) | 517 |
| HindIII | AAGCTT | 3 cut(s) | 129, 1449, 1992 |
| HinfI | GANTC | 7 cut(s) | 703, 1092, 1267, 1577, 1658, 1829, 2026 |
| HpaII | CCGG | 3 cut(s) | 951, 1418, 1772 |
| Hpy166II | GTNNAC | 6 cut(s) | 359, 374, 517, 1762, 1778, 1880 |
| Hpy188I | TCNGA | 7 cut(s) | 162, 234, 384, 820, 1102, 1254, 2035 |
| Hpy8I | GTNNAC | 6 cut(s) | 359, 374, 517, 1762, 1778, 1880 |
| HpyAV | CCTTC | 9 cut(s) | 679, 1162, 1723, 1744, 1813, 2203, 2265, 2536, 2638 |
| HpyCH4III | ACNGT | 8 cut(s) | 1037, 1205, 1628, 1743, 1856, 1983, 2315, 2406 |
| HpyCH4IV | ACGT | 5 cut(s) | 470, 498, 519, 1486, 1882 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 91, 137, 821, 2165, 2576 |
| HpyF3I | CTNAG | 6 cut(s) | 304, 1229, 1506, 1600, 1631, 1950 |
| HpySE526I | ACGT | 5 cut(s) | 470, 498, 519, 1486, 1882 |
| KpnI | GGTACC | 1 cut(s) | 1418 |
| Ksp22I | TGATCA | 1 cut(s) | 157 |
| LmnI | GCTCC | 2 cut(s) | 579, 1251 |
| Lsp1109I | GCAGC | 3 cut(s) | 836, 1502, 2413 |
| LweI | GCATC | 5 cut(s) | 811, 1450, 2155, 2308, 2359 |
| MaeI | CTAG | 8 cut(s) | 297, 362, 912, 1362, 1757, 2057, 2088, 2162 |
| MaeII | ACGT | 5 cut(s) | 470, 498, 519, 1486, 1882 |
| MaeIII | GTNAC | 5 cut(s) | 25, 32, 466, 797, 1075 |
| MbiI | CCGCTC | 1 cut(s) | 1246 |
| MflI | RGATCY | 5 cut(s) | 418, 947, 1297, 2050, 2059 |
| MhlI | GDGCHC | 3 cut(s) | 548, 1679, 2456 |
| MlyI | GAGTC | 1 cut(s) | 2035 |
| MmeI | TCCRAC | 3 cut(s) | 1325, 1712, 1819 |
| Mph1103I | ATGCAT | 2 cut(s) | 897, 1407 |
| MroXI | GAANNNNTTC | 2 cut(s) | 276, 2052 |
| MslI | CAYNNNNRTG | 2 cut(s) | 510, 1058 |
| MspA1I | CMGCKG | 2 cut(s) | 1682, 2426 |
| MspI | CCGG | 3 cut(s) | 951, 1418, 1772 |
| MspR9I | CCNGG | 3 cut(s) | 321, 952, 1773 |
| MvaI | CCWGG | 1 cut(s) | 321 |
| MvnI | CGCG | 1 cut(s) | 85 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 91, 137, 821, 2165, 2576 |
| NciI | CCSGG | 2 cut(s) | 952, 1773 |
| NdeI | CATATG | 1 cut(s) | 187 |
| NlaIV | GGNNCC | 4 cut(s) | 546, 949, 1416, 2214 |
| NmuCI | GTSAC | 2 cut(s) | 25, 32 |
| NsiI | ATGCAT | 2 cut(s) | 897, 1407 |
| NspI | RCATGY | 2 cut(s) | 899, 931 |
| PaeI | GCATGC | 1 cut(s) | 899 |
| PagI | TCATGA | 1 cut(s) | 268 |
| PaqCI | CACCTGC | 1 cut(s) | 131 |
| PciI | ACATGT | 1 cut(s) | 927 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 82, 1376 |
| PdmI | GAANNNNTTC | 2 cut(s) | 276, 2052 |
| PfeI | GAWTC | 6 cut(s) | 703, 1092, 1267, 1577, 1658, 1829 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1453, 2233 |
| PkrI | GCNGC | 7 cut(s) | 84, 430, 720, 826, 1492, 2425, 2428 |
| PleI | GAGTC | 1 cut(s) | 2034 |
| PmaCI | CACGTG | 1 cut(s) | 1487 |
| PmlI | CACGTG | 1 cut(s) | 1487 |
| PpsI | GAGTC | 1 cut(s) | 2034 |
| Ppu21I | YACGTR | 1 cut(s) | 1487 |
| PpuMI | RGGWCCY | 2 cut(s) | 300, 2212 |
| PscI | ACATGT | 1 cut(s) | 927 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1741 |
| PshBI | ATTAAT | 3 cut(s) | 1547, 2276, 2355 |
| PsiI | TTATAA | 1 cut(s) | 122 |
| Psp1406I | AACGTT | 1 cut(s) | 470 |
| Psp5II | RGGWCCY | 2 cut(s) | 300, 2212 |
| Psp6I | CCWGG | 1 cut(s) | 319 |
| PspCI | CACGTG | 1 cut(s) | 1487 |
| PspEI | GGTNACC | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 319 |
| PspN4I | GGNNCC | 4 cut(s) | 546, 949, 1416, 2214 |
| PspOMI | GGGCCC | 1 cut(s) | 544 |
| PspPI | GGNCC | 5 cut(s) | 300, 544, 545, 1877, 2212 |
| PspPPI | RGGWCCY | 2 cut(s) | 300, 2212 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2234, 2266 |
| PsuI | RGATCY | 5 cut(s) | 418, 947, 1297, 2050, 2059 |
| PvuII | CAGCTG | 1 cut(s) | 1682 |
| RseI | CAYNNNNRTG | 2 cut(s) | 510, 1058 |
| SatI | GCNGC | 7 cut(s) | 83, 429, 719, 825, 1491, 2424, 2427 |
| Sau96I | GGNCC | 5 cut(s) | 300, 544, 545, 1877, 2212 |
| ScaI | AGTACT | 1 cut(s) | 1354 |
| SchI | GAGTC | 1 cut(s) | 2035 |
| ScrFI | CCNGG | 3 cut(s) | 321, 952, 1773 |
| SduI | GDGCHC | 3 cut(s) | 548, 1679, 2456 |
| SfaNI | GCATC | 5 cut(s) | 811, 1450, 2155, 2308, 2359 |
| SfcI | CTRYAG | 1 cut(s) | 578 |
| SinI | GGWCC | 3 cut(s) | 300, 1877, 2212 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 510, 1058 |
| SmlI | CTYRAG | 1 cut(s) | 1939 |
| SmoI | CTYRAG | 1 cut(s) | 1939 |
| SpeI | ACTAGT | 1 cut(s) | 1756 |
| SphI | GCATGC | 1 cut(s) | 899 |
| SsiI | CCGC | 8 cut(s) | 83, 112, 428, 718, 1244, 1588, 1905, 2424 |
| SspI | AATATT | 1 cut(s) | 455 |
| SspMI | CTAG | 8 cut(s) | 297, 362, 912, 1362, 1757, 2057, 2088, 2162 |
| StyD4I | CCNGG | 3 cut(s) | 319, 950, 1771 |
| StyI | CCWWGG | 2 cut(s) | 1008, 1361 |
| TaaI | ACNGT | 8 cut(s) | 1037, 1205, 1628, 1743, 1856, 1983, 2315, 2406 |
| TaiI | ACGT | 5 cut(s) | 473, 501, 522, 1489, 1885 |
| TaqI | TCGA | 8 cut(s) | 76, 808, 918, 1023, 1270, 1379, 1524, 2331 |
| TatI | WGTACW | 5 cut(s) | 259, 1352, 1761, 2148, 2406 |
| TauI | GCSGC | 4 cut(s) | 85, 431, 721, 2426 |
| TfiI | GAWTC | 6 cut(s) | 703, 1092, 1267, 1577, 1658, 1829 |
| TseFI | GTSAC | 2 cut(s) | 25, 32 |
| TseI | GCWGC | 3 cut(s) | 824, 1490, 2426 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 32 |
| TspGWI | ACGGA | 2 cut(s) | 359, 2254 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1453, 2233 |
| VpaK11BI | GGWCC | 3 cut(s) | 300, 1877, 2212 |
| VspI | ATTAAT | 3 cut(s) | 1547, 2276, 2355 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 171 |
| XapI | RAATTY | 3 cut(s) | 365, 483, 1424 |
| XbaI | TCTAGA | 2 cut(s) | 2056, 2161 |
| XceI | RCATGY | 2 cut(s) | 899, 931 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1980 |
| XmaJI | CCTAGG | 1 cut(s) | 1361 |
| XmnI | GAANNNNTTC | 2 cut(s) | 276, 2052 |
| XspI | CTAG | 8 cut(s) | 297, 362, 912, 1362, 1757, 2057, 2088, 2162 |
| ZrmI | AGTACT | 1 cut(s) | 1354 |
| Zsp2I | ATGCAT | 2 cut(s) | 897, 1407 |