Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1901 |
| Acc65I | GGTACC | 1 cut(s) | 2542 |
| AccB1I | GGYRCC | 2 cut(s) | 34, 2542 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2581 |
| AccBSI | CCGCTC | 2 cut(s) | 278, 871 |
| AccI | GTMKAC | 3 cut(s) | 43, 848, 977 |
| AccII | CGCG | 3 cut(s) | 40, 131, 413 |
| AclI | AACGTT | 2 cut(s) | 1466, 2354 |
| AclWI | GGATC | 3 cut(s) | 2231, 2420, 2807 |
| AcoI | YGGCCR | 2 cut(s) | 101, 205 |
| AcsI | RAATTY | 4 cut(s) | 1361, 1479, 1531, 2552 |
| AcuI | CTGAAG | 5 cut(s) | 185, 313, 2313, 2876, 3195 |
| AcvI | CACGTG | 1 cut(s) | 2615 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AdeI | CACNNNGTG | 1 cut(s) | 2316 |
| AfaI | GTAC | 8 cut(s) | 895, 987, 1257, 2482, 2544, 2883, 2891, 3095 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 371, 1040, 1169, 2581, 3383 |
| AflIII | ACRYGT | 2 cut(s) | 1558, 2612 |
| AgeI | ACCGGT | 2 cut(s) | 489, 1026 |
| AhlI | ACTAGT | 1 cut(s) | 2884 |
| AjiI | CACGTC | 1 cut(s) | 1561 |
| AjnI | CCWGG | 5 cut(s) | 292, 337, 628, 1315, 3266 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2949, 2981 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1347, 1379 |
| Alw26I | GTCTC | 6 cut(s) | 152, 313, 471, 2087, 2729, 3070 |
| AlwI | GGATC | 3 cut(s) | 2231, 2420, 2807 |
| Ama87I | CYCGRG | 1 cut(s) | 468 |
| AoxI | GGCC | 5 cut(s) | 101, 205, 1606, 1875, 2276 |
| ApaI | GGGCCC | 1 cut(s) | 1610 |
| ApeKI | GCWGC | 5 cut(s) | 124, 542, 1886, 2618, 3248 |
| ApoI | RAATTY | 4 cut(s) | 1361, 1479, 1531, 2552 |
| AseI | ATTAAT | 1 cut(s) | 2675 |
| AsiGI | ACCGGT | 2 cut(s) | 489, 1026 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1272, 3189 |
| Asp718I | GGTACC | 1 cut(s) | 2542 |
| AspA2I | CCTAGG | 1 cut(s) | 2489 |
| AspLEI | GCGC | 1 cut(s) | 299 |
| AspS9I | GGNCC | 4 cut(s) | 1296, 1606, 1607, 3005 |
| AsuC2I | CCSGG | 2 cut(s) | 898, 2901 |
| AsuNHI | GCTAGC | 1 cut(s) | 3262 |
| AvaI | CYCGRG | 1 cut(s) | 468 |
| AvaII | GGWCC | 2 cut(s) | 1296, 3005 |
| AvrII | CCTAGG | 1 cut(s) | 2489 |
| BaeGI | GKGCMC | 1 cut(s) | 1610 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2873, 2906 |
| BanI | GGYRCC | 2 cut(s) | 34, 2542 |
| BanII | GRGCYC | 1 cut(s) | 1610 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 229, 261 |
| BbrPI | CACGTG | 1 cut(s) | 2615 |
| BbsI | GAAGAC | 1 cut(s) | 1524 |
| BbvCI | CCTCAGC | 1 cut(s) | 3078 |
| BbvI | GCAGC | 5 cut(s) | 136, 529, 1898, 2630, 3260 |
| BceAI | ACGGC | 1 cut(s) | 192 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1495, 1529 |
| BciT130I | CCWGG | 5 cut(s) | 294, 339, 630, 1317, 3268 |
| BciVI | GTATCC | 1 cut(s) | 2114 |
| BclI | TGATCA | 1 cut(s) | 1153 |
| BcnI | CCSGG | 2 cut(s) | 898, 2901 |
| BcoDI | GTCTC | 6 cut(s) | 152, 313, 471, 2087, 2729, 3070 |
| BcuI | ACTAGT | 1 cut(s) | 2884 |
| BfmI | CTRYAG | 2 cut(s) | 543, 1640 |
| BfoI | RGCGCY | 1 cut(s) | 300 |
| BfuI | GTATCC | 1 cut(s) | 2114 |
| BglII | AGATCT | 3 cut(s) | 1414, 3178, 3187 |
| BlnI | CCTAGG | 1 cut(s) | 2489 |
| BmcAI | AGTACT | 1 cut(s) | 2482 |
| Bme1390I | CCNGG | 7 cut(s) | 294, 339, 630, 898, 1317, 2901, 3268 |
| Bme18I | GGWCC | 2 cut(s) | 1296, 3005 |
| BmeT110I | CYCGRG | 1 cut(s) | 468 |
| BmgBI | CACGTC | 1 cut(s) | 1561 |
| BmgT120I | GGNCC | 4 cut(s) | 1296, 1606, 1607, 3005 |
| BmiI | GGNNCC | 3 cut(s) | 36, 1608, 2544 |
| BmrFI | CCNGG | 7 cut(s) | 294, 339, 630, 898, 1317, 2901, 3268 |
| BmrI | ACTGGG | 2 cut(s) | 3070, 3141 |
| BmsI | GCATC | 5 cut(s) | 198, 1515, 1873, 2578, 3361 |
| BmtI | GCTAGC | 1 cut(s) | 3266 |
| BmuI | ACTGGG | 2 cut(s) | 3070, 3141 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2869 |
| BpiI | GAAGAC | 1 cut(s) | 1524 |
| BpmI | CTGGAG | 3 cut(s) | 321, 1338, 1416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3078 |
| BpuEI | CTTGAG | 2 cut(s) | 2270, 3052 |
| BpuMI | CCSGG | 2 cut(s) | 898, 2901 |
| Bsa29I | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BsaAI | YACGTR | 1 cut(s) | 2615 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2152, 3051 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaI | GGTCTC | 3 cut(s) | 152, 471, 3070 |
| BsaJI | CCNNGG | 8 cut(s) | 98, 202, 292, 411, 2052, 2157, 2489, 3110 |
| BsaWI | WCCGGW | 3 cut(s) | 489, 1026, 2545 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2467, 2497 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 371, 1040, 1169, 2581, 3383 |
| Bse118I | RCCGGY | 2 cut(s) | 489, 1026 |
| Bse1I | ACTGG | 6 cut(s) | 619, 2149, 2279, 3065, 3147, 3263 |
| Bse3DI | GCAATG | 3 cut(s) | 159, 239, 3015 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2152, 3051 |
| BseBI | CCWGG | 5 cut(s) | 294, 339, 630, 1317, 3268 |
| BseCI | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BseDI | CCNNGG | 8 cut(s) | 98, 202, 292, 411, 2052, 2157, 2489, 3110 |
| BseGI | GGATG | 8 cut(s) | 25, 228, 257, 1591, 2377, 2842, 2866, 3276 |
| BseJI | GATNNNNATC | 2 cut(s) | 2152, 3051 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 371, 1040, 1169, 2581, 3383 |
| BseMI | GCAATG | 3 cut(s) | 159, 239, 3015 |
| BseMII | CTCAG | 7 cut(s) | 62, 149, 329, 1314, 2625, 2742, 3092 |
| BseNI | ACTGG | 6 cut(s) | 619, 2149, 2279, 3065, 3147, 3263 |
| BseRI | GAGGAG | 6 cut(s) | 158, 303, 720, 1101, 1835, 2475 |
| BseSI | GKGCMC | 1 cut(s) | 1610 |
| BseX3I | CGGCCG | 1 cut(s) | 205 |
| BseXI | GCAGC | 5 cut(s) | 136, 529, 1898, 2630, 3260 |
| BsgI | GTGCAG | 3 cut(s) | 840, 1718, 2637 |
| Bsh1236I | CGCG | 3 cut(s) | 40, 131, 413 |
| Bsh1285I | CGRYCG | 1 cut(s) | 208 |
| BshFI | GGCC | 5 cut(s) | 103, 207, 1608, 1877, 2278 |
| BshNI | GGYRCC | 2 cut(s) | 34, 2542 |
| BshTI | ACCGGT | 2 cut(s) | 489, 1026 |
| BshVI | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BsiEI | CGRYCG | 1 cut(s) | 208 |
| BsiHKCI | CYCGRG | 1 cut(s) | 468 |
| BsiSI | CCGG | 7 cut(s) | 70, 104, 490, 898, 1027, 2546, 2900 |
| BslFI | GGGAC | 3 cut(s) | 2241, 2818, 2836 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 371, 1040, 1169, 2581, 3383 |
| BsmAI | GTCTC | 6 cut(s) | 152, 313, 471, 2087, 2729, 3070 |
| BsmBI | CGTCTC | 1 cut(s) | 2729 |
| BsmFI | GGGAC | 3 cut(s) | 2241, 2818, 2836 |
| BsnI | GGCC | 5 cut(s) | 103, 207, 1608, 1877, 2278 |
| Bso31I | GGTCTC | 3 cut(s) | 152, 471, 3070 |
| BsoBI | CYCGRG | 1 cut(s) | 468 |
| Bsp120I | GGGCCC | 1 cut(s) | 1606 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1610 |
| Bsp1407I | TGTACA | 3 cut(s) | 985, 1255, 2889 |
| Bsp68I | TCGCGA | 1 cut(s) | 131 |
| BspANI | GGCC | 5 cut(s) | 103, 207, 1608, 1877, 2278 |
| BspCNI | CTCAG | 7 cut(s) | 61, 148, 328, 1313, 2626, 2741, 3091 |
| BspDI | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BspFNI | CGCG | 3 cut(s) | 40, 131, 413 |
| BspHI | TCATGA | 1 cut(s) | 1264 |
| BspLI | GGNNCC | 3 cut(s) | 36, 1608, 2544 |
| BspMAI | CTGCAG | 1 cut(s) | 547 |
| BspOI | GCTAGC | 1 cut(s) | 3266 |
| BspPI | GGATC | 3 cut(s) | 2231, 2420, 2807 |
| BspT107I | GGYRCC | 2 cut(s) | 34, 2542 |
| BspTNI | GGTCTC | 3 cut(s) | 152, 471, 3070 |
| BsrBI | CCGCTC | 2 cut(s) | 278, 871 |
| BsrDI | GCAATG | 3 cut(s) | 159, 239, 3015 |
| BsrFI | RCCGGY | 2 cut(s) | 489, 1026 |
| BsrGI | TGTACA | 3 cut(s) | 985, 1255, 2889 |
| BsrI | ACTGG | 6 cut(s) | 619, 2149, 2279, 3065, 3147, 3263 |
| BssAI | RCCGGY | 2 cut(s) | 489, 1026 |
| BssECI | CCNNGG | 8 cut(s) | 98, 202, 292, 411, 2052, 2157, 2489, 3110 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 4 cut(s) | 98, 2052, 2489, 3110 |
| Bst2UI | CCWGG | 5 cut(s) | 294, 339, 630, 1317, 3268 |
| Bst6I | CTCTTC | 2 cut(s) | 24, 1686 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstAUI | TGTACA | 3 cut(s) | 985, 1255, 2889 |
| BstBAI | YACGTR | 1 cut(s) | 2615 |
| BstC8I | GCNNGC | 6 cut(s) | 129, 547, 691, 1720, 1959, 3264 |
| BstDSI | CCRYGG | 1 cut(s) | 411 |
| BstEII | GGTNACC | 3 cut(s) | 360, 492, 1029 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| BstF5I | GGATG | 8 cut(s) | 25, 228, 257, 1591, 2377, 2842, 2866, 3276 |
| BstFNI | CGCG | 3 cut(s) | 40, 131, 413 |
| BstH2I | RGCGCY | 1 cut(s) | 300 |
| BstHHI | GCGC | 1 cut(s) | 299 |
| BstMAI | GTCTC | 6 cut(s) | 152, 313, 471, 2087, 2729, 3070 |
| BstMCI | CGRYCG | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 100, 725, 1883, 3371 |
| BstNI | CCWGG | 5 cut(s) | 294, 339, 630, 1317, 3268 |
| BstNSI | RCATGY | 1 cut(s) | 1961 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2869 |
| BstPI | GGTNACC | 3 cut(s) | 360, 492, 1029 |
| BstSCI | CCNGG | 7 cut(s) | 292, 337, 628, 896, 1315, 2899, 3266 |
| BstSFI | CTRYAG | 2 cut(s) | 543, 1640 |
| BstSLI | GKGCMC | 1 cut(s) | 1610 |
| BstUI | CGCG | 3 cut(s) | 40, 131, 413 |
| BstV1I | GCAGC | 5 cut(s) | 136, 529, 1898, 2630, 3260 |
| BstV2I | GAAGAC | 1 cut(s) | 1524 |
| BstX2I | RGATCY | 4 cut(s) | 1414, 2425, 3178, 3187 |
| BstYI | RGATCY | 4 cut(s) | 1414, 2425, 3178, 3187 |
| BstZI | CGGCCG | 1 cut(s) | 205 |
| Bsu15I | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BsuI | GTATCC | 1 cut(s) | 2114 |
| BsuRI | GGCC | 5 cut(s) | 103, 207, 1608, 1877, 2278 |
| BsuTUI | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| BtgI | CCRYGG | 1 cut(s) | 411 |
| BtrI | CACGTC | 1 cut(s) | 1561 |
| BtsCI | GGATG | 8 cut(s) | 25, 228, 257, 1591, 2377, 2842, 2866, 3276 |
| BtsI | GCAGTG | 1 cut(s) | 2344 |
| BtsIMutI | CAGTG | 2 cut(s) | 2321, 2344 |
| BtuMI | TCGCGA | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 6 cut(s) | 129, 547, 691, 1720, 1959, 3264 |
| CciI | TCATGA | 1 cut(s) | 1264 |
| CfoI | GCGC | 1 cut(s) | 299 |
| Cfr10I | RCCGGY | 2 cut(s) | 489, 1026 |
| Cfr13I | GGNCC | 4 cut(s) | 1296, 1606, 1607, 3005 |
| Cfr42I | CCGCGG | 1 cut(s) | 414 |
| ClaI | ATCGAT | 3 cut(s) | 1980, 2067, 2652 |
| CseI | GACGC | 5 cut(s) | 29, 116, 122, 770, 1560 |
| Csp6I | GTAC | 8 cut(s) | 894, 986, 1256, 2481, 2543, 2882, 2890, 3094 |
| CspAI | ACCGGT | 2 cut(s) | 489, 1026 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1792, 1827 |
| CviQI | GTAC | 8 cut(s) | 894, 986, 1256, 2481, 2543, 2882, 2890, 3094 |
| DraI | TTTAAA | 1 cut(s) | 2829 |
| DraIII | CACNNNGTG | 1 cut(s) | 2316 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1901 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1901 |
| EaeI | YGGCCR | 2 cut(s) | 101, 205 |
| EagI | CGGCCG | 1 cut(s) | 205 |
| Eam1104I | CTCTTC | 2 cut(s) | 24, 1686 |
| EarI | CTCTTC | 2 cut(s) | 24, 1686 |
| EclXI | CGGCCG | 1 cut(s) | 205 |
| Eco130I | CCWWGG | 4 cut(s) | 98, 2052, 2489, 3110 |
| Eco24I | GRGCYC | 1 cut(s) | 1610 |
| Eco31I | GGTCTC | 3 cut(s) | 152, 471, 3070 |
| Eco32I | GATATC | 2 cut(s) | 1787, 2897 |
| Eco47I | GGWCC | 2 cut(s) | 1296, 3005 |
| Eco52I | CGGCCG | 1 cut(s) | 205 |
| Eco57I | CTGAAG | 5 cut(s) | 185, 313, 2313, 2876, 3195 |
| Eco72I | CACGTG | 1 cut(s) | 2615 |
| Eco88I | CYCGRG | 1 cut(s) | 468 |
| Eco91I | GGTNACC | 3 cut(s) | 360, 492, 1029 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1296, 1606 |
| EcoO65I | GGTNACC | 3 cut(s) | 360, 492, 1029 |
| EcoRI | GAATTC | 1 cut(s) | 1361 |
| EcoRII | CCWGG | 5 cut(s) | 292, 337, 628, 1315, 3266 |
| EcoRV | GATATC | 2 cut(s) | 1787, 2897 |
| EcoT14I | CCWWGG | 4 cut(s) | 98, 2052, 2489, 3110 |
| EcoT22I | ATGCAT | 3 cut(s) | 1508, 1959, 2535 |
| EcoT38I | GRGCYC | 1 cut(s) | 1610 |
| ErhI | CCWWGG | 4 cut(s) | 98, 2052, 2489, 3110 |
| Esp3I | CGTCTC | 1 cut(s) | 2729 |
| FaqI | GGGAC | 3 cut(s) | 2241, 2818, 2836 |
| FauNDI | CATATG | 1 cut(s) | 1183 |
| FbaI | TGATCA | 1 cut(s) | 1153 |
| FblI | GTMKAC | 3 cut(s) | 43, 848, 977 |
| FokI | GGATG | 8 cut(s) | 32, 235, 244, 1598, 2364, 2849, 2873, 3283 |
| FriOI | GRGCYC | 1 cut(s) | 1610 |
| GlaI | GCGC | 1 cut(s) | 298 |
| GsuI | CTGGAG | 3 cut(s) | 321, 1338, 1416 |
| HaeII | RGCGCY | 1 cut(s) | 300 |
| HaeIII | GGCC | 5 cut(s) | 103, 207, 1608, 1877, 2278 |
| HapII | CCGG | 7 cut(s) | 70, 104, 490, 898, 1027, 2546, 2900 |
| HgaI | GACGC | 5 cut(s) | 29, 116, 122, 770, 1560 |
| HhaI | GCGC | 1 cut(s) | 299 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin6I | GCGC | 1 cut(s) | 297 |
| HinP1I | GCGC | 1 cut(s) | 297 |
| HincII | GTYRAC | 1 cut(s) | 1579 |
| HindII | GTYRAC | 1 cut(s) | 1579 |
| HindIII | AAGCTT | 2 cut(s) | 2577, 3120 |
| HpaII | CCGG | 7 cut(s) | 70, 104, 490, 898, 1027, 2546, 2900 |
| Hpy99I | CGWCG | 2 cut(s) | 256, 1527 |
| HpyAV | CCTTC | 6 cut(s) | 749, 1741, 2218, 2851, 2872, 2941 |
| HpyCH4IV | ACGT | 8 cut(s) | 282, 1466, 1560, 1575, 1581, 2354, 2614, 3010 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 100, 725, 1883, 3371 |
| HpySE526I | ACGT | 8 cut(s) | 282, 1466, 1560, 1575, 1581, 2354, 2614, 3010 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| HspAI | GCGC | 1 cut(s) | 297 |
| KpnI | GGTACC | 1 cut(s) | 2546 |
| Ksp22I | TGATCA | 1 cut(s) | 1153 |
| KspI | CCGCGG | 1 cut(s) | 414 |
| LmnI | GCTCC | 6 cut(s) | 72, 577, 733, 1114, 1641, 2379 |
| Lsp1109I | GCAGC | 5 cut(s) | 136, 529, 1898, 2630, 3260 |
| LweI | GCATC | 5 cut(s) | 198, 1515, 1873, 2578, 3361 |
| MaeII | ACGT | 8 cut(s) | 282, 1466, 1560, 1575, 1581, 2354, 2614, 3010 |
| MbiI | CCGCTC | 2 cut(s) | 278, 871 |
| MflI | RGATCY | 4 cut(s) | 1414, 2425, 3178, 3187 |
| MhlI | GDGCHC | 1 cut(s) | 1610 |
| MlyI | GAGTC | 4 cut(s) | 127, 155, 3163, 3280 |
| MmeI | TCCRAC | 5 cut(s) | 604, 889, 2453, 2840, 2947 |
| Mph1103I | ATGCAT | 3 cut(s) | 1508, 1959, 2535 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1272, 3189 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2112, 2136 |
| MspA1I | CMGCKG | 4 cut(s) | 413, 905, 2810, 3251 |
| MspI | CCGG | 7 cut(s) | 70, 104, 490, 898, 1027, 2546, 2900 |
| MspR9I | CCNGG | 7 cut(s) | 294, 339, 630, 898, 1317, 2901, 3268 |
| MvaI | CCWGG | 5 cut(s) | 294, 339, 630, 1317, 3268 |
| MvnI | CGCG | 3 cut(s) | 40, 131, 413 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 100, 725, 1883, 3371 |
| NciI | CCSGG | 2 cut(s) | 898, 2901 |
| NdeI | CATATG | 1 cut(s) | 1183 |
| NheI | GCTAGC | 1 cut(s) | 3262 |
| NlaIV | GGNNCC | 3 cut(s) | 36, 1608, 2544 |
| NmeAIII | GCCGAG | 1 cut(s) | 183 |
| NmuCI | GTSAC | 9 cut(s) | 353, 360, 415, 492, 758, 777, 952, 1029, 3299 |
| NruI | TCGCGA | 1 cut(s) | 131 |
| NsiI | ATGCAT | 3 cut(s) | 1508, 1959, 2535 |
| NspI | RCATGY | 1 cut(s) | 1961 |
| PaeI | GCATGC | 1 cut(s) | 1961 |
| PaeR7I | CTCGAG | 1 cut(s) | 468 |
| PagI | TCATGA | 1 cut(s) | 1264 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2504 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1272, 3189 |
| PfeI | GAWTC | 8 cut(s) | 1544, 1765, 2090, 2148, 2395, 2705, 2786, 2957 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2581 |
| PinAI | ACCGGT | 2 cut(s) | 489, 1026 |
| PleI | GAGTC | 4 cut(s) | 127, 154, 3162, 3280 |
| PmaCI | CACGTG | 1 cut(s) | 2615 |
| PmlI | CACGTG | 1 cut(s) | 2615 |
| PpsI | GAGTC | 4 cut(s) | 127, 154, 3162, 3280 |
| Ppu21I | YACGTR | 1 cut(s) | 2615 |
| PpuMI | RGGWCCY | 1 cut(s) | 1296 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2869 |
| PshBI | ATTAAT | 1 cut(s) | 2675 |
| Psp1406I | AACGTT | 2 cut(s) | 1466, 2354 |
| Psp5II | RGGWCCY | 1 cut(s) | 1296 |
| Psp6I | CCWGG | 5 cut(s) | 292, 337, 628, 1315, 3266 |
| PspCI | CACGTG | 1 cut(s) | 2615 |
| PspEI | GGTNACC | 3 cut(s) | 360, 492, 1029 |
| PspGI | CCWGG | 5 cut(s) | 292, 337, 628, 1315, 3266 |
| PspN4I | GGNNCC | 3 cut(s) | 36, 1608, 2544 |
| PspOMI | GGGCCC | 1 cut(s) | 1606 |
| PspPI | GGNCC | 4 cut(s) | 1296, 1606, 1607, 3005 |
| PspPPI | RGGWCCY | 1 cut(s) | 1296 |
| PstI | CTGCAG | 1 cut(s) | 547 |
| PsuI | RGATCY | 4 cut(s) | 1414, 2425, 3178, 3187 |
| PvuII | CAGCTG | 3 cut(s) | 905, 2810, 3251 |
| RruI | TCGCGA | 1 cut(s) | 131 |
| RsaI | GTAC | 8 cut(s) | 895, 987, 1257, 2482, 2544, 2883, 2891, 3095 |
| RsaNI | GTAC | 8 cut(s) | 894, 986, 1256, 2481, 2543, 2882, 2890, 3094 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2112, 2136 |
| SacII | CCGCGG | 1 cut(s) | 414 |
| Sau96I | GGNCC | 4 cut(s) | 1296, 1606, 1607, 3005 |
| ScaI | AGTACT | 1 cut(s) | 2482 |
| SchI | GAGTC | 4 cut(s) | 127, 155, 3163, 3280 |
| ScrFI | CCNGG | 7 cut(s) | 294, 339, 630, 898, 1317, 2901, 3268 |
| SduI | GDGCHC | 1 cut(s) | 1610 |
| SfaNI | GCATC | 5 cut(s) | 198, 1515, 1873, 2578, 3361 |
| SfcI | CTRYAG | 2 cut(s) | 543, 1640 |
| Sfr274I | CTCGAG | 1 cut(s) | 468 |
| Sfr303I | CCGCGG | 1 cut(s) | 414 |
| SgrBI | CCGCGG | 1 cut(s) | 414 |
| SinI | GGWCC | 2 cut(s) | 1296, 3005 |
| SlaI | CTCGAG | 1 cut(s) | 468 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2112, 2136 |
| SmlI | CTYRAG | 3 cut(s) | 468, 2249, 3067 |
| SmoI | CTYRAG | 3 cut(s) | 468, 2249, 3067 |
| SpeI | ACTAGT | 1 cut(s) | 2884 |
| SphI | GCATGC | 1 cut(s) | 1961 |
| SspI | AATATT | 1 cut(s) | 1451 |
| StyD4I | CCNGG | 7 cut(s) | 292, 337, 628, 896, 1315, 2899, 3266 |
| StyI | CCWWGG | 4 cut(s) | 98, 2052, 2489, 3110 |
| TaiI | ACGT | 8 cut(s) | 285, 1469, 1563, 1578, 1584, 2357, 2617, 3013 |
| TatI | WGTACW | 4 cut(s) | 985, 1255, 2480, 2889 |
| TauI | GCSGC | 5 cut(s) | 40, 413, 950, 1427, 1783 |
| TfiI | GAWTC | 8 cut(s) | 1544, 1765, 2090, 2148, 2395, 2705, 2786, 2957 |
| TscAI | CASTG | 2 cut(s) | 2321, 2344 |
| TseFI | GTSAC | 9 cut(s) | 353, 360, 415, 492, 758, 777, 952, 1029, 3299 |
| TseI | GCWGC | 5 cut(s) | 124, 542, 1886, 2618, 3248 |
| Tsp45I | GTSAC | 9 cut(s) | 353, 360, 415, 492, 758, 777, 952, 1029, 3299 |
| TspGWI | ACGGA | 2 cut(s) | 240, 1355 |
| TspRI | CASTG | 2 cut(s) | 2321, 2344 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2581 |
| VpaK11BI | GGWCC | 2 cut(s) | 1296, 3005 |
| VspI | ATTAAT | 1 cut(s) | 2675 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1167 |
| XapI | RAATTY | 4 cut(s) | 1361, 1479, 1531, 2552 |
| XbaI | TCTAGA | 4 cut(s) | 619, 2698, 3181, 3367 |
| XceI | RCATGY | 1 cut(s) | 1961 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3108 |
| XhoI | CTCGAG | 1 cut(s) | 468 |
| XmaJI | CCTAGG | 1 cut(s) | 2489 |
| XmiI | GTMKAC | 3 cut(s) | 43, 848, 977 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1272, 3189 |
| ZrmI | AGTACT | 1 cut(s) | 2482 |
| Zsp2I | ATGCAT | 3 cut(s) | 1508, 1959, 2535 |