FvH4_1g15941

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000414
Physical Location & Seq
Forward (+)
9067895 .. 9071057
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15941.t1

Sequence Viewer

Length: 1443 bp
ATGTCGGGAGATTCCACTCTGGGACAAGGATCCTTTCATCGACCACCATCAATCATGTCAGCTATGGCGTTAAGAGATATAACAAATATTGGTGGAGAATCTAGCTTGGCTGACACAAGTTGCAAACCGAAATTCGGTATGGAATTTGACTCTGAAGAAGCTGCTTATATATTTTACAATGAGTATGCAAGGAAGATGGGATTCAGTGTTAGAAAAGAACAGGTGGTGAAGAACAAGAAAACCGGTGAGGTGTTATCAAAGTTCATAGACAGCTATGAAGAAGAAGATGAGTTTCTAGCTGCTTGGGATGCGATGCTCACGGAGTATAATGTGCATGGAGATGAATGGTTCAAAAGAATTTTTGAAAAGATACCTCAAGTTCAGAGACCTATTAAAATGTTGATTGAAGCAGGGAATGTCTACACAAAGATTATATTTGAGGAATTTCAAAATGAGTTTGTGAGCGCTCTTGATTTTTATATAAAAACTACTGTTGATACTGGAGAAGACATTGTGTATACGGTTGGTGATTTGGACACTTCCAAGGAATTTCGTGTTATAAGGAAAAAGAGTGACAATTATGTCTCTTGTTGTTGCAAGTTGTTCGAGATGAATGGGGTGTTGTGTGGTCATGCTATAAAGATCTTAAGGGAGGTAATGAATGTAAAGGTAATTCTCAGTGAGTATATTTTGAATAGGTGGACAAGAAAAGCAAGAAGTAATAGTGTGAAGGATATGCATGGAAGGGACATACAAGTAGATACTAAGTTGCAACAGACCACTTGGTATAGGTCTTTATGCTCTATTTTTACAAAAATATCTTCAAGGGGTGCTGAGAGCAAGGAAACTTATGAAGTTGCATTTGAACATGCAAATAAGTTAAGAACCACTATCGAAGAGATGTTGAGCTCAAAACGAGATGGTACCAACCATGAAAAGGATGATCAAGGATCTGCTCCAATTACAGAAGATACTTGTGTCCAAGCAAAGGGTTTCAGGAAGAGAGGAGGTTCTCGGGGAAGAAAAAGACTGACTAGCCAATTGGAGAGAGCTTACATGAGGAAATTAGCTCAAATGAGACAACTTTTGGGTAAAAAAGGCTGCAGTGATGCTGATGTCCAAGAAAATGGTTCAAAAACAGGGAGGCAAGCTTCTGGTGGAAGAAAGAATTCTGAAACTACTTCACGGCCTGCTCAATCATCAGAAGAAGTAATAGCAAACATCTCTACTGATAATGTTGCTGATGTACAAGCAAACGGTTCAAAAAGAAGGAGGCAAGCCTCTGGAGGAAGAAAGAGTACTAAAACTACTTCACAGACTTCTCCATCATCAAAAGATGTAGGTAAAGTTGATAATCTGATACAACAAGCATCCCAACAACATCCTACTGGCCACTTAGAATCTGAACATGTTCAAGCCTTGAATAAGACCGTTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

481

Amino Acids

54.0

Weight (kDa)

8.86

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AasI GACNNNNNNGTC 1 cut(s) 581
Acc65I GGTACC 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 923
AccI GTMKAC 2 cut(s) 420, 518
AclWI GGATC 3 cut(s) 24, 37, 958
AcoI YGGCCR 1 cut(s) 1390
AcsI RAATTY 6 cut(s) 131, 143, 357, 443, 548, 1168
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 3 cut(s) 925, 1248, 1300
AfeI AGCGCT 1 cut(s) 466
AfiI CCNNNNNNNGG 3 cut(s) 134, 937, 988
AflII CTTAAG 1 cut(s) 646
AflIII ACRYGT 1 cut(s) 1408
AgeI ACCGGT 1 cut(s) 242
AluBI AGCT 9 cut(s) 62, 105, 161, 273, 299, 909, 1052, 1070, 1151
AluI AGCT 9 cut(s) 62, 105, 161, 273, 299, 909, 1052, 1070, 1151
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 3 cut(s) 379, 589, 1072
AlwI GGATC 3 cut(s) 24, 37, 958
Ama87I CYCGRG 1 cut(s) 1014
Aor51HI AGCGCT 1 cut(s) 466
AoxI GGCC 2 cut(s) 1187, 1390
ApeKI GCWGC 3 cut(s) 161, 299, 1101
ApoI RAATTY 6 cut(s) 131, 143, 357, 443, 548, 1168
AsiGI ACCGGT 1 cut(s) 242
Asp700I GAANNNNTTC 2 cut(s) 1168, 1410
Asp718I GGTACC 1 cut(s) 923
AspLEI GCGC 1 cut(s) 467
AsuHPI GGTGA 3 cut(s) 238, 257, 539
AvaI CYCGRG 1 cut(s) 1014
BaeI ACNNNNGTAYC 2 cut(s) 963, 996
BalI TGGCCA 1 cut(s) 1392
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 911
BarI GAAGNNNNNNTAC 2 cut(s) 1282, 1314
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 911
BbvI GCAGC 3 cut(s) 148, 286, 1088
BccI CCATC 4 cut(s) 55, 190, 914, 1333
BceAI ACGGC 1 cut(s) 1202
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 3 cut(s) 379, 589, 1072
BfaI CTAG 3 cut(s) 102, 296, 1035
BfmI CTRYAG 1 cut(s) 1102
BfoI RGCGCY 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 646
BglII AGATCT 1 cut(s) 642
BisI GCNGC 3 cut(s) 162, 300, 1102
BlsI GCNGC 3 cut(s) 163, 301, 1103
BmcAI AGTACT 1 cut(s) 1300
BmeT110I CYCGRG 1 cut(s) 1014
BmiI GGNNCC 2 cut(s) 31, 925
BmsI GCATC 4 cut(s) 298, 303, 1099, 1379
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 2 cut(s) 522, 1305
BpuEI CTTGAG 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 543
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 937, 988
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 505, 1393
BseDI CCNNGG 1 cut(s) 543
BseGI GGATG 4 cut(s) 313, 946, 1370, 1381
BseLI CCNNNNNNNGG 3 cut(s) 134, 937, 988
BseMII CTCAG 2 cut(s) 691, 825
BseNI ACTGG 2 cut(s) 505, 1393
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 3 cut(s) 148, 286, 1088
BshFI GGCC 2 cut(s) 1189, 1392
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 36, 761
BslI CCNNNNNNNGG 3 cut(s) 134, 937, 988
BsmAI GTCTC 3 cut(s) 379, 589, 1072
BsmFI GGGAC 2 cut(s) 36, 761
BsnI GGCC 2 cut(s) 1189, 1392
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 1014
Bsp1286I GDGCHC 1 cut(s) 911
Bsp1407I TGTACA 1 cut(s) 1246
Bsp143I GATC 4 cut(s) 29, 642, 943, 950
BspANI GGCC 2 cut(s) 1189, 1392
BspCNI CTCAG 2 cut(s) 690, 826
BspLI GGNNCC 2 cut(s) 31, 925
BspMAI CTGCAG 1 cut(s) 1106
BspPI GGATC 3 cut(s) 24, 37, 958
BspT107I GGYRCC 1 cut(s) 923
BspTI CTTAAG 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 1246
BsrI ACTGG 2 cut(s) 505, 1393
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 543
BssMI GATC 4 cut(s) 29, 642, 943, 950
BssNAI GTATAC 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 543
Bst1107I GTATAC 1 cut(s) 519
Bst4CI ACNGT 4 cut(s) 493, 523, 1259, 1432
Bst6I CTCTTC 2 cut(s) 891, 995
BstAFI CTTAAG 1 cut(s) 646
BstAUI TGTACA 1 cut(s) 1246
BstC8I GCNNGC 3 cut(s) 1149, 1191, 1278
BstDEI CTNAG 4 cut(s) 677, 765, 834, 1396
BstF5I GGATG 4 cut(s) 313, 946, 1370, 1381
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 4 cut(s) 32, 645, 946, 953
BstMAI GTCTC 3 cut(s) 379, 589, 1072
BstMBI GATC 4 cut(s) 29, 642, 943, 950
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNSI RCATGY 2 cut(s) 872, 1412
BstSFI CTRYAG 1 cut(s) 1102
BstV1I GCAGC 3 cut(s) 148, 286, 1088
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 29, 642, 950
BstXI CCANNNNNNTGG 1 cut(s) 1127
BstYI RGATCY 3 cut(s) 29, 642, 950
BstZ17I GTATAC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 1189, 1392
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 4 cut(s) 313, 946, 1370, 1381
BtsI GCAGTG 1 cut(s) 1111
BtsIMutI CAGTG 3 cut(s) 211, 685, 1111
Cac8I GCNNGC 3 cut(s) 1149, 1191, 1278
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 3 cut(s) 924, 1247, 1299
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 8 cut(s) 55, 335, 632, 740, 869, 932, 1057, 1409
CviQI GTAC 3 cut(s) 924, 1247, 1299
DdeI CTNAG 4 cut(s) 677, 765, 834, 1396
DpnI GATC 4 cut(s) 31, 644, 945, 952
DpnII GATC 4 cut(s) 29, 642, 943, 950
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 1390
Eam1104I CTCTTC 2 cut(s) 891, 995
EarI CTCTTC 2 cut(s) 891, 995
Ecl136II GAGCTC 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 911
Eco31I GGTCTC 1 cut(s) 379
Eco47III AGCGCT 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 909
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 1014
EcoICRI GAGCTC 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 1168
EcoT14I CCWWGG 1 cut(s) 543
EcoT22I ATGCAT 1 cut(s) 741
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 8 cut(s) 58, 338, 635, 743, 872, 935, 1060, 1412
FaqI GGGAC 2 cut(s) 36, 761
FatI CATG 8 cut(s) 54, 334, 631, 739, 868, 931, 1056, 1408
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 2 cut(s) 420, 518
Fnu4HI GCNGC 3 cut(s) 162, 300, 1102
FokI GGATG 4 cut(s) 320, 953, 1357, 1368
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 3 cut(s) 162, 300, 1102
FspBI CTAG 3 cut(s) 102, 296, 1035
GlaI GCGC 1 cut(s) 466
GluI GCNGC 3 cut(s) 162, 300, 1102
GsuI CTGGAG 2 cut(s) 522, 1305
HaeII RGCGCY 1 cut(s) 468
HaeIII GGCC 2 cut(s) 1189, 1392
HapII CCGG 1 cut(s) 243
HhaI GCGC 1 cut(s) 467
Hin1II CATG 8 cut(s) 58, 338, 635, 743, 872, 935, 1060, 1412
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 1149
HinfI GANTC 5 cut(s) 11, 98, 149, 201, 1400
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 238, 257, 539
Hpy166II GTNNAC 3 cut(s) 421, 519, 702
Hpy188I TCNGA 6 cut(s) 154, 384, 1174, 1204, 1359, 1405
Hpy188III TCNNGA 5 cut(s) 6, 470, 607, 997, 1284
Hpy8I GTNNAC 3 cut(s) 421, 519, 702
HpyAV CCTTC 3 cut(s) 724, 738, 1263
HpyCH4III ACNGT 4 cut(s) 493, 523, 1259, 1432
HpyCH4V TGCA 9 cut(s) 123, 188, 334, 597, 739, 772, 860, 872, 1104
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 4 cut(s) 677, 765, 834, 1396
Hsp92II CATG 8 cut(s) 58, 338, 635, 743, 872, 935, 1060, 1412
HspAI GCGC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 4 cut(s) 29, 642, 943, 950
LmnI GCTCC 1 cut(s) 961
Lsp1109I GCAGC 3 cut(s) 148, 286, 1088
LweI GCATC 4 cut(s) 298, 303, 1099, 1379
MaeI CTAG 3 cut(s) 102, 296, 1035
MaeIII GTNAC 1 cut(s) 572
MalI GATC 4 cut(s) 31, 644, 945, 952
MboI GATC 4 cut(s) 29, 642, 943, 950
MfeI CAATTG 1 cut(s) 1040
MflI RGATCY 3 cut(s) 29, 642, 950
MhlI GDGCHC 1 cut(s) 911
MlsI TGGCCA 1 cut(s) 1392
MluNI TGGCCA 1 cut(s) 1392
MlyI GAGTC 1 cut(s) 143
Mox20I TGGCCA 1 cut(s) 1392
Mph1103I ATGCAT 1 cut(s) 741
MroXI GAANNNNTTC 2 cut(s) 1168, 1410
MscI TGGCCA 1 cut(s) 1392
MseI TTAA 4 cut(s) 71, 393, 647, 881
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 1392
MspCI CTTAAG 1 cut(s) 646
MspI CCGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 1040
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 4 cut(s) 29, 642, 943, 950
NlaIII CATG 8 cut(s) 58, 338, 635, 743, 872, 935, 1060, 1412
NlaIV GGNNCC 2 cut(s) 31, 925
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 2 cut(s) 872, 1412
PciI ACATGT 1 cut(s) 1408
PdmI GAANNNNTTC 2 cut(s) 1168, 1410
PfeI GAWTC 4 cut(s) 11, 98, 201, 1400
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 163, 301, 1103
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PscI ACATGT 1 cut(s) 1408
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 911
PspN4I GGNNCC 2 cut(s) 31, 925
PstI CTGCAG 1 cut(s) 1106
PsuI RGATCY 3 cut(s) 29, 642, 950
RsaI GTAC 3 cut(s) 925, 1248, 1300
RsaNI GTAC 3 cut(s) 924, 1247, 1299
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 911
SaqAI TTAA 4 cut(s) 71, 393, 647, 881
SatI GCNGC 3 cut(s) 162, 300, 1102
Sau3AI GATC 4 cut(s) 29, 642, 943, 950
ScaI AGTACT 1 cut(s) 1300
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 911
SfaNI GCATC 4 cut(s) 298, 303, 1099, 1379
SfcI CTRYAG 1 cut(s) 1102
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 375, 646
SmoI CTYRAG 2 cut(s) 375, 646
SspI AATATT 1 cut(s) 88
SspMI CTAG 3 cut(s) 102, 296, 1035
SstI GAGCTC 1 cut(s) 911
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 4 cut(s) 493, 523, 1259, 1432
TaqI TCGA 3 cut(s) 40, 606, 894
TatI WGTACW 2 cut(s) 1246, 1298
TfiI GAWTC 4 cut(s) 11, 98, 201, 1400
Tru1I TTAA 4 cut(s) 71, 393, 647, 881
Tru9I TTAA 4 cut(s) 71, 393, 647, 881
TscAI CASTG 3 cut(s) 211, 685, 1111
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 3 cut(s) 161, 299, 1101
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 8 cut(s) 26, 253, 291, 357, 626, 674, 867, 948
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 211, 685, 1111
Vha464I CTTAAG 1 cut(s) 646
XapI RAATTY 6 cut(s) 131, 143, 357, 443, 548, 1168
XceI RCATGY 2 cut(s) 872, 1412
XmiI GTMKAC 2 cut(s) 420, 518
XmnI GAANNNNTTC 2 cut(s) 1168, 1410
XspI CTAG 3 cut(s) 102, 296, 1035
ZrmI AGTACT 1 cut(s) 1300
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.