Rmu_sc0003275.1_g000010

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003275.1
OG0000414
Physical Location & Seq
Forward (+)
41515 .. 42918
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003275.1_g000010.1.cds

Sequence Viewer

Length: 1404 bp
atggataattcattgggtgctgcagacattgatattgagaattctgatttggagttggattggaaacctagaaaaggaatggagtttgattctgaacaagcagcttatgacttctacaatagatatggaggaaaaaaggggtttagtattagaagggagactcatggtaagaataaaagaacaaaagaactcacttcaagattatttgtttgctgtaaggaaggtattcgatccaaagataagagggattacatgatcagaaaacccagagcagagacaagaacaggttgcggtgctaaactttgtattaaattgaataggaggaacaataagttctttgttacccattttgttgaagggcacaatcatcctcttgtggggaaagaatgttcccacatgctaccttcgcaacggaaagtacaagactctcaaggcattgacatagacttagcacacgattctggaattggtgtgacttctctatatgaattgatgggtaagaaagcaggtggaagagatgctgttgggtatacaaaacaggatgtaaaaaactaccttcgatcaaggagacagagaagcttggagtatggagaagctggatatattatgaaatatttttcagatcaaacattggaaaacccttcattctaccatgctatgcaattagatagtgaggagcaaataacaaacttattttgggcagatgctaaaatgatcattgattatggccaatttggggatgttgttagttttgatacaacatacaaggttaacaaatctaatcgacctcttgctgtgtttgtaggattcaatcatcaccgcgagactattatatttggggtggctctaatgtatgatgaaacagccgattcatttatatggttgtttgagacatttttgagggcaatgtctggaaaggctccaaaaacaatatttacagatcaagatgctgcaatggcaaaggctcttcgacatgttatgcctgatgtatatcataggctttgcaaatggcatatgatgcaaaatgccatcaagcatggacatagttttttgacagaagaaggtgggatcacaagtgttttgtcaaggttcatggaaaatattgaggaggaagatgagtttatatctgcttgggatgctatgcttgataaatatggtgctcgtgacaatacttggttaagtagcatatatgatttaagagaaaaatggggcttttcttatgttaagcgagcatggtcagctggaataagaagcactcaattgagtgaaagttttaactcggccttgaaaaaatatttagactctgaccataatctatcagagttttttatacactttgagaggatggttgctgataaaaggtacaaggagttagaagcagaatatgatatgtggttcaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

467

Amino Acids

54.32

Weight (kDa)

7.26

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 530
AccII CGCG 1 cut(s) 822
AciI CCGC 2 cut(s) 291, 820
AclWI GGATC 2 cut(s) 225, 1076
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 2 cut(s) 420, 1364
AfiI CCNNNNNNNGG 3 cut(s) 74, 377, 736
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 5 cut(s) 198, 316, 356, 811, 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 4 cut(s) 104, 579, 596, 1241
AluI AGCT 4 cut(s) 104, 579, 596, 1241
Alw21I GWGCWC 1 cut(s) 1162
Alw26I GTCTC 5 cut(s) 152, 269, 562, 818, 884
AlwI GGATC 2 cut(s) 225, 1076
AoxI GGCC 2 cut(s) 727, 1281
ApeKI GCWGC 3 cut(s) 20, 101, 950
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 1 cut(s) 729
BauI CACGAG 1 cut(s) 1161
Bbv12I GWGCWC 1 cut(s) 1162
BbvI GCAGC 3 cut(s) 7, 113, 937
BccI CCATC 3 cut(s) 487, 1037, 1339
BclI TGATCA 2 cut(s) 255, 714
BcoDI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 3 cut(s) 21, 102, 951
BlsI GCNGC 3 cut(s) 22, 103, 952
BmiI GGNNCC 1 cut(s) 921
BmsI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
BpuEI CTTGAG 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 990
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 377, 736
Bse3DI GCAATG 2 cut(s) 912, 960
Bse8I GATNNNNATC 1 cut(s) 990
BseGI GGATG 5 cut(s) 367, 547, 745, 1141, 1350
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 74, 377, 736
BseMI GCAATG 2 cut(s) 912, 960
BseRI GAGGAG 2 cut(s) 689, 1121
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 7, 113, 937
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 2 cut(s) 729, 1283
BsiHKAI GWGCWC 1 cut(s) 1162
BslI CCNNNNNNNGG 3 cut(s) 74, 377, 736
BsmAI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BsnI GGCC 2 cut(s) 729, 1283
Bsp1286I GDGCHC 2 cut(s) 363, 1162
Bsp143I GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
BspACI CCGC 2 cut(s) 291, 820
BspANI GGCC 2 cut(s) 729, 1283
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 921
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 2 cut(s) 225, 1076
BspQI GCTCTTC 1 cut(s) 972
BsrDI GCAATG 2 cut(s) 912, 960
BssMI GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
BssNAI GTATAC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 1161
Bst1107I GTATAC 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 1161
Bst6I CTCTTC 2 cut(s) 508, 972
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstC8I GCNNGC 1 cut(s) 1230
BstDEI CTNAG 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 5 cut(s) 367, 547, 745, 1141, 1350
BstFNI CGCG 1 cut(s) 822
BstKTI GATC 7 cut(s) 233, 258, 563, 625, 717, 943, 1071
BstMAI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BstMBI GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
BstMWI GCNNNNNNNGC 5 cut(s) 406, 956, 1018, 1136, 1238
BstNSI RCATGY 2 cut(s) 400, 977
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 3 cut(s) 7, 113, 937
BstZ17I GTATAC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 729, 1283
BtsCI GGATG 5 cut(s) 367, 547, 745, 1141, 1350
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 1230
Csp6I GTAC 2 cut(s) 419, 1363
CviAII CATG 8 cut(s) 164, 253, 397, 653, 974, 1037, 1093, 1233
CviQI GTAC 2 cut(s) 419, 1363
DdeI CTNAG 1 cut(s) 448
DpnI GATC 7 cut(s) 232, 257, 562, 624, 716, 942, 1070
DpnII GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 508, 972
EarI CTCTTC 2 cut(s) 508, 972
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 40
FaeI CATG 8 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1236
FatI CATG 8 cut(s) 163, 252, 396, 652, 973, 1036, 1092, 1232
FauNDI CATATG 1 cut(s) 1014
FbaI TGATCA 2 cut(s) 255, 714
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 3 cut(s) 21, 102, 951
FokI GGATG 5 cut(s) 354, 554, 752, 1148, 1357
Fsp4HI GCNGC 3 cut(s) 21, 102, 951
FspBI CTAG 1 cut(s) 69
GluI GCNGC 3 cut(s) 21, 102, 951
HaeIII GGCC 2 cut(s) 729, 1283
Hin1II CATG 8 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1236
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 7 cut(s) 89, 160, 425, 458, 807, 869, 1301
HpaI GTTAAC 1 cut(s) 772
HphI GGTGA 1 cut(s) 809
Hpy166II GTNNAC 2 cut(s) 531, 772
Hpy188I TCNGA 6 cut(s) 46, 94, 260, 622, 1306, 1321
Hpy188III TCNNGA 5 cut(s) 198, 462, 912, 944, 1163
Hpy8I GTNNAC 2 cut(s) 531, 772
HpyAV CCTTC 7 cut(s) 147, 215, 350, 414, 566, 651, 1055
HpyCH4V TGCA 5 cut(s) 23, 661, 953, 1005, 1021
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 956, 1018, 1136, 1238
HpyF3I CTNAG 1 cut(s) 448
Hsp92II CATG 8 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1236
Ksp22I TGATCA 2 cut(s) 255, 714
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 2 cut(s) 676, 925
Lsp1109I GCAGC 3 cut(s) 7, 113, 937
LweI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 3 cut(s) 340, 472, 1163
MalI GATC 7 cut(s) 232, 257, 562, 624, 716, 942, 1070
MboI GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
MboII GAAGA 4 cut(s) 525, 959, 1070, 1124
MfeI CAATTG 1 cut(s) 1259
MhlI GDGCHC 2 cut(s) 363, 1162
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 8 cut(s) 7, 40, 311, 465, 488, 662, 731, 1259
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 3 cut(s) 154, 419, 1295
MmeI TCCRAC 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 729
MseI TTAA 6 cut(s) 309, 771, 1178, 1196, 1224, 1275
MslI CAYNNNNRTG 1 cut(s) 877
Msp20I TGGCCA 1 cut(s) 729
MspA1I CMGCKG 1 cut(s) 1241
MunI CAATTG 1 cut(s) 1259
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 5 cut(s) 406, 956, 1018, 1136, 1238
NdeI CATATG 1 cut(s) 1014
NdeII GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
NlaIII CATG 8 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1236
NlaIV GGNNCC 1 cut(s) 921
NmeAIII GCCGAG 1 cut(s) 1259
NmuCI GTSAC 2 cut(s) 472, 1163
NspI RCATGY 2 cut(s) 400, 977
PaqCI CACCTGC 1 cut(s) 497
PciI ACATGT 1 cut(s) 973
PciSI GCTCTTC 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 89, 458, 807, 869
PkrI GCNGC 3 cut(s) 22, 103, 952
PleI GAGTC 3 cut(s) 154, 419, 1295
PpsI GAGTC 3 cut(s) 154, 419, 1295
PscI ACATGT 1 cut(s) 973
PspN4I GGNNCC 1 cut(s) 921
PstI CTGCAG 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 1241
RsaI GTAC 2 cut(s) 420, 1364
RsaNI GTAC 2 cut(s) 419, 1363
RseI CAYNNNNRTG 1 cut(s) 877
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 6 cut(s) 309, 771, 1178, 1196, 1224, 1275
SatI GCNGC 3 cut(s) 21, 102, 951
Sau3AI GATC 7 cut(s) 230, 255, 560, 622, 714, 940, 1068
SchI GAGTC 3 cut(s) 154, 419, 1295
SduI GDGCHC 2 cut(s) 363, 1162
SfaNI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 877
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 8 cut(s) 7, 40, 311, 465, 488, 662, 731, 1259
SsiI CCGC 2 cut(s) 291, 820
SspI AATATT 4 cut(s) 614, 933, 1102, 1295
SspMI CTAG 1 cut(s) 69
TaqI TCGA 4 cut(s) 229, 559, 784, 970
TasI AATT 8 cut(s) 7, 40, 311, 465, 488, 662, 731, 1259
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 4 cut(s) 89, 458, 807, 869
Tru1I TTAA 6 cut(s) 309, 771, 1178, 1196, 1224, 1275
Tru9I TTAA 6 cut(s) 309, 771, 1178, 1196, 1224, 1275
TseFI GTSAC 2 cut(s) 472, 1163
TseI GCWGC 3 cut(s) 20, 101, 950
Tsp45I GTSAC 2 cut(s) 472, 1163
TspDTI ATGAA 6 cut(s) 501, 623, 633, 861, 873, 1081
TspGWI ACGGA 1 cut(s) 427
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 40
XceI RCATGY 2 cut(s) 400, 977
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.