Rh2CG468700

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000414
Physical Location & Seq
Reverse (-)
63282435 .. 63283026
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG468700.1

Sequence Viewer

Length: 462 bp
ATGGACGATAAGAAATTGACTATAGCTGAGCGATATAGAACAGCTTGCCCTATATTAGTTGATATTGCATCTCAAGCATCTGGAGATGAAAAAGCCTTTGAATTGGTAATGAAAGTCGCACATGAGTTAAGAAAACAAGTTGAAGACATCTTCTTGGACAACTCAACAACAAGTCATGATGAACTGCCTAATTCTTTACAAGGTGGGAGTGAGAGGATGGTTCAAGAAAGTCAAATTGAAAGCTTACTTCAAAAGGCAAAAGGCTTGAAGAAGAAAAAAAGTTGCAAAGGTCGCAAAAAACGCCCCAAGGCTTGTCATGAGAATAAAGGCAAGGGAAAGAAAAAATCTTCTAGGAAAGATAATTCAATTCAAGAATCATATCAGGGTCAAGAAGTTGAACCATCGAAAAAGATAAATAAGAAATCATCTGATAAGGATCAATCAATGACTCAACAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

153

Amino Acids

17.31

Weight (kDa)

9.5

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 444
AgsI TTSAA 9 cut(s) 101, 143, 224, 239, 251, 268, 366, 371, 398
AluBI AGCT 3 cut(s) 26, 44, 243
AluI AGCT 3 cut(s) 26, 44, 243
AlwI GGATC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 2 cut(s) 211, 409
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 21
BlpI GCTNAGC 1 cut(s) 27
BmsI GCATC 2 cut(s) 77, 86
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 435
BseMII CTCAG 1 cut(s) 18
Bsp143I GATC 1 cut(s) 436
Bsp1720I GCTNAGC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 2 cut(s) 175, 316
BspPI GGATC 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 439
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 3 cut(s) 74, 291, 300
BstSFI CTRYAG 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 2 cut(s) 175, 316
CviAII CATG 3 cut(s) 122, 176, 317
CviJI RGCY 6 cut(s) 26, 44, 95, 243, 264, 311
CviKI_1 RGCY 6 cut(s) 26, 44, 95, 243, 264, 311
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 125, 179, 320
FaiI YATR 7 cut(s) 23, 36, 53, 123, 177, 318, 379
FatI CATG 3 cut(s) 121, 175, 316
FokI GGATG 1 cut(s) 229
FspBI CTAG 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 102
Hin1II CATG 3 cut(s) 125, 179, 320
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 2 cut(s) 374, 448
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 6 cut(s) 81, 176, 224, 317, 371, 389
HpyCH4V TGCA 2 cut(s) 68, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 291, 300
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 125, 179, 320
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 2 cut(s) 66, 368
LweI GCATC 2 cut(s) 77, 86
MaeI CTAG 1 cut(s) 351
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 5 cut(s) 142, 155, 280, 283, 339
MluCI AATT 7 cut(s) 14, 101, 190, 234, 361, 366, 455
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 1 cut(s) 207
MseI TTAA 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 74, 291, 300
NdeII GATC 1 cut(s) 436
NlaIII CATG 3 cut(s) 125, 179, 320
PagI TCATGA 2 cut(s) 175, 316
PfeI GAWTC 1 cut(s) 374
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 128
Sau3AI GATC 1 cut(s) 436
SchI GAGTC 1 cut(s) 442
SetI ASST 5 cut(s) 28, 46, 205, 245, 292
SfaNI GCATC 2 cut(s) 77, 86
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 7 cut(s) 14, 101, 190, 234, 361, 366, 455
SspMI CTAG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 1 cut(s) 404
TasI AATT 7 cut(s) 14, 101, 190, 234, 361, 366, 455
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 102, 125, 195
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.