Rw6G036920

FAR1-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
61390113 .. 61396002
5890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036920.1

Sequence Viewer

Length: 1824 bp
ATGGATAATTCATTGGGTGCTACAGACATTGATATTGAGAATTCTGATTTGGAGTTGGATTGGAAACCTAGAAAAGGAATGGAGTTTGATTTTGAACAAGCAGCTTATGACTTCTACAATAGATATGGAGGAAAAAAGGGGTTTAGTATTAGAAGGGAGACTCATGGTAAGAATAAAAGAACAAAAGAACTCACTTCAAGATTATTTGTTTGCTGTAAGGAAGGTTTTCGATCCAAAGATAAGAGGGATTACATGATCAGAAAACCCAGAGCAGAGACAAGAACAGGTTGCGGTGCTCAACTTTGTATTAAATTGAATAGGAGGAACAATAAGTTCTTTGTTACCCATTTTGTTGAAGAGCACAATCATCCTCTTGTGGGGAAAGAATGTTCCCACATGCTACCTTCGCAACGGAAAGTACAAGACTCTCAAGGCATTGACATAGACTTAGCACACGATTCTGGAATTGGTGTGACTTCTTTATATGAATTGATGGGTAAGCAAGCAGGTGGAAGAGATGCTGTTGGGTATACAAAACAGGATGTAAAAAACTACCTTCGATCAAGGAGACAGAGAAGCTTGGAGTATGGAGAAGCTGGATATATTATGAAATATTTTTCAGATCAAACATTGGAAAACCCTTCATTCTACCATGCTATGCAATTAGATAGTGAGGAGCAAATAACAAACTTATTTTGGGCAGATGCTAAAATGATCATTGATTATGGCCAATTTGGGGATGTTGTTAGTTTTGATACAACATACAAGGTTAACAAATCTAATCGACCTCTTGCTGTGTTTGTAGGATTCAATCATCACCGCGAGACTATTATATTTGGGGTGGCTCTAATGTATGATGAAACAGCTGATTCATTTATATGGTTGTTTGAGACATTTTTTAGGGCAATGTCTGGAAAGGCTCCAAAGACAATATTTACAGATCAAGATGCTGCAATGGCAAAGGCTCTTCGACATGTTATGCCTGATTCATATCATAGGCTTTGCAAATGGCATATGATGCAAAATGCCATAAAGCATGGACATAGTTTTTTGACAGAAGAAGGTGGGATCACAAGTGTTTTGTCAAGGTTCATGGAAAATATTGAGGAGGAAGATGAGTTTATATCTGCTTGGGATGCTATGCTTGATAAATATGGTGCTCGTGACAATACTTGTTTTAACTCGGCCTTGAAAAAATATTTAGACTCTGACCATAATTTGTCAGAGTTTTTTATACACTTTGAGAGGATGGTTGCTGATAAAAGGTATAAGGAGTTAGAAGCAGAATATGATATGTGCTTCAGGTTGCCTATTCTGAAAATGCATATATATACAGTTATTAGAGATGGTTACTCTAGAGAACGCCAAGTGAAAAGAGATACCTCTTGGTACAGATCCTTATGTTCCACCTACATTAGGATATCAAACAGGGCTTCTGAAAATGAAAAGGCATACAAATTAGCAATGATACATGCAGAGAAATTAGCAAAAGAAATTGAAGACTTGCTACGGTCTGAAATGAATGCTAATGGGGATGAGAATGAACATACAACTCAATCTACTCCTATTGAACAACTCAATGGTAATGTGGTGAATGCAAAGGGACTGAAGAAAAAGGAATCTTCTAGAGGAAGAAAACGGCGAATCAAGAGTCAATTGGAGATGAGCATGGAAAAAAATAAAAGACAGAAACAATCTAGTAAAAAAGCTATTGAGGGTATGGATCAATCCAACACTCATCGTTCTTCCCCAGATAATTCAGTATTAATTGAAAATTGCAATGGGTCATTCATACCCAGCAAAATGCCAATACATCAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

70.47

Weight (kDa)

8.54

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 37 - 126 2.2e-23 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 217 - 329 1.1e-11 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 248 - 342 1.3e-29 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 530
AccII CGCG 1 cut(s) 822
AciI CCGC 2 cut(s) 291, 820
AclWI GGATC 4 cut(s) 225, 1076, 1389, 1731
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 1285, 1628
AfaI GTAC 2 cut(s) 420, 1391
AfiI CCNNNNNNNGG 4 cut(s) 74, 377, 736, 1416
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 9 cut(s) 95, 198, 316, 356, 811, 1192, 1499, 1571, 1772
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 5 cut(s) 104, 579, 596, 866, 1709
AluI AGCT 5 cut(s) 104, 579, 596, 866, 1709
Alw21I GWGCWC 3 cut(s) 298, 363, 1162
Alw26I GTCTC 5 cut(s) 152, 269, 562, 818, 884
AlwI GGATC 4 cut(s) 225, 1076, 1389, 1731
AoxI GGCC 2 cut(s) 727, 1185
ApeKI GCWGC 2 cut(s) 101, 950
ApoI RAATTY 1 cut(s) 40
ArsI GACNNNNNNTTYG 2 cut(s) 1636, 1668
AseI ATTAAT 1 cut(s) 1766
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 809, 1603
BalI TGGCCA 1 cut(s) 729
BarI GAAGNNNNNNTAC 2 cut(s) 1491, 1523
BauI CACGAG 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 1506
Bbv12I GWGCWC 3 cut(s) 298, 363, 1162
BbvI GCAGC 2 cut(s) 113, 937
BccI CCATC 3 cut(s) 487, 1243, 1340
BceAI ACGGC 1 cut(s) 1655
BclI TGATCA 2 cut(s) 255, 714
BcoDI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BfaI CTAG 4 cut(s) 69, 1356, 1626, 1698
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 2 cut(s) 102, 951
BlsI GCNGC 2 cut(s) 103, 952
BmiI GGNNCC 1 cut(s) 921
BmsI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
BpiI GAAGAC 1 cut(s) 1506
BpuEI CTTGAG 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 990
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 377, 736, 1416
Bse3DI GCAATG 4 cut(s) 912, 960, 1470, 1786
Bse8I GATNNNNATC 1 cut(s) 990
BseGI GGATG 6 cut(s) 367, 547, 745, 1141, 1254, 1540
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 4 cut(s) 74, 377, 736, 1416
BseMI GCAATG 4 cut(s) 912, 960, 1470, 1786
BseRI GAGGAG 2 cut(s) 689, 1121
BseXI GCAGC 2 cut(s) 113, 937
BseYI CCCAGC 1 cut(s) 1796
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 2 cut(s) 729, 1187
BsiHKAI GWGCWC 3 cut(s) 298, 363, 1162
BslFI GGGAC 1 cut(s) 1617
BslI CCNNNNNNNGG 4 cut(s) 74, 377, 736, 1416
BsmAI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BsmFI GGGAC 1 cut(s) 1617
BsmI GAATGC 2 cut(s) 1528, 1600
BsnI GGCC 2 cut(s) 729, 1187
Bsp1286I GDGCHC 3 cut(s) 298, 363, 1162
Bsp143I GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
BspACI CCGC 2 cut(s) 291, 820
BspANI GGCC 2 cut(s) 729, 1187
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 921
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 4 cut(s) 225, 1076, 1389, 1731
BspQI GCTCTTC 2 cut(s) 351, 972
BsrDI GCAATG 4 cut(s) 912, 960, 1470, 1786
BssMI GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
BssNAI GTATAC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 1161
Bst1107I GTATAC 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 1161
Bst4CI ACNGT 2 cut(s) 1336, 1512
Bst6I CTCTTC 3 cut(s) 351, 508, 972
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 448
BstENI CCTNNNNNAGG 2 cut(s) 72, 1414
BstF5I GGATG 6 cut(s) 367, 547, 745, 1141, 1254, 1540
BstFNI CGCG 1 cut(s) 822
BstKTI GATC 9 cut(s) 233, 258, 563, 625, 717, 943, 1071, 1397, 1726
BstMAI GTCTC 5 cut(s) 152, 269, 562, 818, 884
BstMBI GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
BstMWI GCNNNNNNNGC 4 cut(s) 406, 956, 1018, 1136
BstNSI RCATGY 3 cut(s) 400, 977, 1475
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 2 cut(s) 113, 937
BstV2I GAAGAC 1 cut(s) 1506
BstX2I RGATCY 1 cut(s) 1394
BstYI RGATCY 1 cut(s) 1394
BstZ17I GTATAC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 729, 1187
BtsCI GGATG 6 cut(s) 367, 547, 745, 1141, 1254, 1540
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 504
Csp6I GTAC 2 cut(s) 419, 1390
CviAII CATG 9 cut(s) 164, 253, 397, 653, 974, 1037, 1093, 1472, 1669
CviQI GTAC 2 cut(s) 419, 1390
DdeI CTNAG 1 cut(s) 448
DpnI GATC 9 cut(s) 232, 257, 562, 624, 716, 942, 1070, 1396, 1725
DpnII GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 3 cut(s) 351, 508, 972
EarI CTCTTC 3 cut(s) 351, 508, 972
Eco32I GATATC 1 cut(s) 1422
Eco57I CTGAAG 2 cut(s) 1285, 1628
EcoNI CCTNNNNNAGG 2 cut(s) 72, 1414
EcoRI GAATTC 1 cut(s) 40
EcoRV GATATC 1 cut(s) 1422
EcoT22I ATGCAT 1 cut(s) 1326
FaeI CATG 9 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1475, 1672
FaqI GGGAC 1 cut(s) 1617
FatI CATG 9 cut(s) 163, 252, 396, 652, 973, 1036, 1092, 1471, 1668
FauNDI CATATG 1 cut(s) 1014
FbaI TGATCA 2 cut(s) 255, 714
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 102, 951
FokI GGATG 6 cut(s) 354, 554, 752, 1148, 1261, 1547
Fsp4HI GCNGC 2 cut(s) 102, 951
FspBI CTAG 4 cut(s) 69, 1356, 1626, 1698
GluI GCNGC 2 cut(s) 102, 951
GsaI CCCAGC 1 cut(s) 1800
HaeIII GGCC 2 cut(s) 729, 1187
Hin1II CATG 9 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1475, 1672
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 577
HpaI GTTAAC 1 cut(s) 772
HphI GGTGA 2 cut(s) 809, 1603
Hpy166II GTNNAC 2 cut(s) 531, 772
Hpy188I TCNGA 8 cut(s) 46, 260, 622, 1210, 1225, 1317, 1438, 1516
Hpy188III TCNNGA 8 cut(s) 198, 462, 912, 944, 1163, 1356, 1626, 1648
Hpy8I GTNNAC 2 cut(s) 531, 772
HpyAV CCTTC 6 cut(s) 147, 215, 414, 566, 651, 1055
HpyCH4III ACNGT 2 cut(s) 1336, 1512
HpyCH4V TGCA 8 cut(s) 661, 953, 1005, 1021, 1324, 1475, 1598, 1779
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 956, 1018, 1136
HpyF3I CTNAG 1 cut(s) 448
Hsp92II CATG 9 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1475, 1672
Ksp22I TGATCA 2 cut(s) 255, 714
KspAI GTTAAC 1 cut(s) 772
Kzo9I GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
LguI GCTCTTC 2 cut(s) 351, 972
LmnI GCTCC 2 cut(s) 676, 925
Lsp1109I GCAGC 2 cut(s) 113, 937
LweI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
MaeI CTAG 4 cut(s) 69, 1356, 1626, 1698
MaeIII GTNAC 4 cut(s) 340, 472, 1163, 1349
MalI GATC 9 cut(s) 232, 257, 562, 624, 716, 942, 1070, 1396, 1725
MboI GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
MfeI CAATTG 1 cut(s) 1655
MflI RGATCY 1 cut(s) 1394
MhlI GDGCHC 3 cut(s) 298, 363, 1162
MlsI TGGCCA 1 cut(s) 729
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 4 cut(s) 154, 419, 1199, 1660
MmeI TCCRAC 2 cut(s) 36, 1755
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 1326
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 729
MseI TTAA 4 cut(s) 309, 771, 1179, 1766
MslI CAYNNNNRTG 1 cut(s) 877
Msp20I TGGCCA 1 cut(s) 729
MspA1I CMGCKG 1 cut(s) 866
MunI CAATTG 1 cut(s) 1655
Mva1269I GAATGC 2 cut(s) 1528, 1600
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 4 cut(s) 406, 956, 1018, 1136
NdeI CATATG 1 cut(s) 1014
NdeII GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
NlaIII CATG 9 cut(s) 167, 256, 400, 656, 977, 1040, 1096, 1475, 1672
NlaIV GGNNCC 1 cut(s) 921
NmeAIII GCCGAG 1 cut(s) 1163
NmuCI GTSAC 2 cut(s) 472, 1163
NsiI ATGCAT 1 cut(s) 1326
NspI RCATGY 3 cut(s) 400, 977, 1475
PaqCI CACCTGC 1 cut(s) 497
PciI ACATGT 1 cut(s) 973
PciSI GCTCTTC 2 cut(s) 351, 972
PctI GAATGC 2 cut(s) 1528, 1600
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 6 cut(s) 458, 807, 869, 986, 1619, 1644
PkrI GCNGC 2 cut(s) 103, 952
PleI GAGTC 4 cut(s) 154, 419, 1199, 1659
PpsI GAGTC 4 cut(s) 154, 419, 1199, 1659
PscI ACATGT 1 cut(s) 973
PshBI ATTAAT 1 cut(s) 1766
PspFI CCCAGC 1 cut(s) 1796
PspN4I GGNNCC 1 cut(s) 921
PsuI RGATCY 1 cut(s) 1394
PvuII CAGCTG 1 cut(s) 866
RsaI GTAC 2 cut(s) 420, 1391
RsaNI GTAC 2 cut(s) 419, 1390
RseI CAYNNNNRTG 1 cut(s) 877
SapI GCTCTTC 2 cut(s) 351, 972
SaqAI TTAA 4 cut(s) 309, 771, 1179, 1766
SatI GCNGC 2 cut(s) 102, 951
Sau3AI GATC 9 cut(s) 230, 255, 560, 622, 714, 940, 1068, 1394, 1723
SchI GAGTC 4 cut(s) 154, 419, 1199, 1660
SduI GDGCHC 3 cut(s) 298, 363, 1162
SfaNI GCATC 5 cut(s) 508, 694, 937, 1008, 1126
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 877
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SsiI CCGC 2 cut(s) 291, 820
SspI AATATT 4 cut(s) 614, 933, 1102, 1199
SspMI CTAG 4 cut(s) 69, 1356, 1626, 1698
TaaI ACNGT 2 cut(s) 1336, 1512
TaqI TCGA 4 cut(s) 229, 559, 784, 970
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 6 cut(s) 458, 807, 869, 986, 1619, 1644
Tru1I TTAA 4 cut(s) 309, 771, 1179, 1766
Tru9I TTAA 4 cut(s) 309, 771, 1179, 1766
TseFI GTSAC 2 cut(s) 472, 1163
TseI GCWGC 2 cut(s) 101, 950
Tsp45I GTSAC 2 cut(s) 472, 1163
TspGWI ACGGA 1 cut(s) 427
VspI ATTAAT 1 cut(s) 1766
XagI CCTNNNNNAGG 2 cut(s) 72, 1414
XapI RAATTY 1 cut(s) 40
XbaI TCTAGA 2 cut(s) 1355, 1625
XceI RCATGY 3 cut(s) 400, 977, 1475
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 4 cut(s) 69, 1356, 1626, 1698
Zsp2I ATGCAT 1 cut(s) 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.