Rmu_sc0008085.1_g000015

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008085.1
OG0000414
Physical Location & Seq
Reverse (-)
45307 .. 45810
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008085.1_g000015.1.cds

Sequence Viewer

Length: 504 bp
atgatcattgattatggccaatttggggatgttgttagttttgatacgacatacaagattaacaaatctaatcgacctcttgctgtgttcgttggattcaatcaccaccgtgagactattatatttggggtggctttaatgtatgatgaaacagcagattcatttatatggttgtttgagacctttttgagggcaatgtctggaaaggctccaaagactatatttacagatcaagatgctgcaatggcaaaggctcttcgacatgttatgccagatgcatatcataggctttgcaaatggcatatgatgcaaaatgccataaagcatgggagtagttttttgacagaggatggtggaatcacaagtattttgtcaaggttcatggaaaatattgaggaggaagatgagtttatatctgcttgggatgctatgcttgatcaatatggtgcgcgtgacaatacttggctgagtagcatatatgatttaagagaaaagtggggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

167

Amino Acids

19.31

Weight (kDa)

5.14

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 25, 189
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 107, 173
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 95
BalI TGGCCA 1 cut(s) 18
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 344
BclI TGATCA 2 cut(s) 3, 436
BcoDI GTCTC 2 cut(s) 107, 173
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 4 cut(s) 226, 265, 297, 415
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 189
Bse3DI GCAATG 2 cut(s) 201, 249
Bse8I GATNNNNATC 1 cut(s) 279
BseGI GGATG 3 cut(s) 34, 355, 430
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 25, 189
BseMI GCAATG 2 cut(s) 201, 249
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 25, 189
BsmAI GTCTC 2 cut(s) 107, 173
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 3 cut(s) 3, 229, 436
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 201, 249
BssMI GATC 3 cut(s) 3, 229, 436
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 187
BstF5I GGATG 3 cut(s) 34, 355, 430
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 6, 232, 439
BstMAI GTCTC 2 cut(s) 107, 173
BstMBI GATC 3 cut(s) 3, 229, 436
BstMWI GCNNNNNNNGC 3 cut(s) 245, 307, 425
BstNSI RCATGY 1 cut(s) 266
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 3 cut(s) 34, 355, 430
CfoI GCGC 1 cut(s) 451
CviAII CATG 3 cut(s) 263, 326, 382
CviJI RGCY 7 cut(s) 18, 134, 209, 254, 289, 466, 501
CviKI_1 RGCY 7 cut(s) 18, 134, 209, 254, 289, 466, 501
DdeI CTNAG 1 cut(s) 467
DpnI GATC 3 cut(s) 5, 231, 438
DpnII GATC 3 cut(s) 3, 229, 436
EaeI YGGCCR 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 3 cut(s) 266, 329, 385
FatI CATG 3 cut(s) 262, 325, 381
FauNDI CATATG 1 cut(s) 303
FbaI TGATCA 2 cut(s) 3, 436
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 3 cut(s) 41, 362, 437
Fsp4HI GCNGC 1 cut(s) 240
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 18
HhaI GCGC 1 cut(s) 451
Hin1II CATG 3 cut(s) 266, 329, 385
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 3 cut(s) 96, 158, 357
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 201, 233
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 242, 278, 294, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 307, 425
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 3 cut(s) 266, 329, 385
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 2 cut(s) 3, 436
Kzo9I GATC 3 cut(s) 3, 229, 436
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 186, 285
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 226, 265, 297, 415
MaeIII GTNAC 1 cut(s) 452
MalI GATC 3 cut(s) 5, 231, 438
MboI GATC 3 cut(s) 3, 229, 436
MboII GAAGA 2 cut(s) 248, 413
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 5 cut(s) 87, 183, 340, 388, 391
Mox20I TGGCCA 1 cut(s) 18
Mph1103I ATGCAT 1 cut(s) 280
MscI TGGCCA 1 cut(s) 18
MseI TTAA 3 cut(s) 60, 137, 485
MslI CAYNNNNRTG 2 cut(s) 108, 166
Msp20I TGGCCA 1 cut(s) 18
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 245, 307, 425
NdeI CATATG 1 cut(s) 303
NdeII GATC 3 cut(s) 3, 229, 436
NlaIII CATG 3 cut(s) 266, 329, 385
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 108
PciI ACATGT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 96, 158, 357
PkrI GCNGC 1 cut(s) 241
PscI ACATGT 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 210
RseI CAYNNNNRTG 2 cut(s) 108, 166
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 60, 137, 485
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 3, 229, 436
SetI ASST 3 cut(s) 79, 185, 380
SfaNI GCATC 4 cut(s) 226, 265, 297, 415
SmiMI CAYNNNNRTG 2 cut(s) 108, 166
Sse9I AATT 1 cut(s) 20
SspI AATATT 1 cut(s) 391
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 73, 259
TasI AATT 1 cut(s) 20
TfiI GAWTC 3 cut(s) 96, 158, 357
Tru1I TTAA 3 cut(s) 60, 137, 485
Tru9I TTAA 3 cut(s) 60, 137, 485
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 150, 162, 370
XagI CCTNNNNNAGG 1 cut(s) 187
XceI RCATGY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.