FvH4_4g06832

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000414
Physical Location & Seq
Forward (+)
6154624 .. 6156185
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06832.t1

Sequence Viewer

Length: 1092 bp
ATGGAGAAGCAAGGATGCTTATTGAAATACTTCCAAAATCAAGCATTAGAAAATCCCTCATTTTTCTATGATGTGCAATTGGATAGTGATGAACAAATAACCAATATATTTTGGGCCGATGTTGGGATGATAGTTGATTATGGTTTATTTGGTGATGTTGTGAGTTTTGACACTACATATAAAACCAGTGAAGCCAATCGTCCATTTGGAGTATTTGTGGGATTTAATCATCATCGTGAGACTGTAATCTTTGGGGCAGCATTGATGTATGATGAGACTTCTGATTCCTTTACATGGTTATTTGAGACATTTTTGGAGGCAATGTCCAACAAGGCTCCAAAGTCTATCTTTACTGATCAGGATGCTGCAATGGCTAAAGCTTGTGCAAATGTGATGCCTAACACATATCACATGCTTTGCACATGGCATATAATGAACAATGCCATTAAAAATGCAAGCAGTATATTTAAGGGTGATGATCAGGTCATTGCCTTTTTATCAACATGTATGAAGAACTATGAAGAAGAGGATGAGTTCCTGCATGCATGGGAAGAAATGCTCAACACATATAATGCACATGGAAATCCTTGGTTGAGTAGTATATTTCGGTTAAAGGAGAAATGGGCAAAACCATATGTCAATTGGGCATGGTCTGCTGGAATGCATAACACACAACTAAGTGAGAGTTTCAATGCTAGCCTAAAATCATATGTGAAGTCAGACTATGATGTGGTTGAGTTTTTCAAGCACTTCGATAGATTGCTCAACGATAAGTGGTATAAAGAGTTAGAGGCAGAGTATGCTTTGTGCTACAAGTTACCTAGTGTTGCCATATTTACATCAATGGTGATCAAGGCTGGAAATACTTACACTAAAGCTATATTTGATGAATTCCAAATTCAGTATGAGAAGTCTCTTGATTACAATTTAGTTGGATGTATTCAAGATGGTGATGACATTGTGTTTAAAGTTGCCTTTAATGGTCATCCAAAGGAGAGATGTGTTAGGGTGAAGAAAGACAATACAATATCATGTAGTTGCAGGTTGTTTGAGATTGAAGGTGGACAAGAAAAGCAAGATCTAAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

364

Amino Acids

41.97

Weight (kDa)

4.97

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 21 - 134 1.9e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 53 - 147 1.4e-28 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1032
AcsI RAATTY 2 cut(s) 890, 897
AfiI CCNNNNNNNGG 2 cut(s) 123, 294
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 5 cut(s) 25, 691, 745, 944, 1058
AluBI AGCT 2 cut(s) 380, 878
AluI AGCT 2 cut(s) 380, 878
Alw26I GTCTC 4 cut(s) 233, 269, 299, 918
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 257, 365
ApoI RAATTY 2 cut(s) 890, 897
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 5 cut(s) 164, 485, 859, 962, 1021
AsuNHI GCTAGC 1 cut(s) 695
BbvI GCAGC 2 cut(s) 269, 352
BccI CCATC 1 cut(s) 941
BclI TGATCA 3 cut(s) 355, 478, 849
BcoDI GTCTC 4 cut(s) 233, 269, 299, 918
BfaI CTAG 2 cut(s) 696, 822
BfuAI ACCTGC 1 cut(s) 1032
BglII AGATCT 1 cut(s) 1078
BisI GCNGC 2 cut(s) 258, 366
BlsI GCNGC 2 cut(s) 259, 367
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 3 cut(s) 5, 352, 384
BmtI GCTAGC 1 cut(s) 699
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 4 cut(s) 201, 231, 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 294
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 3 cut(s) 327, 375, 486
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 6 cut(s) 20, 132, 367, 535, 941, 985
BseLI CCNNNNNNNGG 2 cut(s) 123, 294
BseMI GCAATG 3 cut(s) 327, 375, 486
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 269, 352
BshFI GGCC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 123, 294
BsmAI GTCTC 4 cut(s) 233, 269, 299, 918
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 355, 478, 849, 1078
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 1032
BspOI GCTAGC 1 cut(s) 699
BsrDI GCAATG 3 cut(s) 327, 375, 486
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 4 cut(s) 355, 478, 849, 1078
BssT1I CCWWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 2 cut(s) 653, 800
BstC8I GCNNGC 3 cut(s) 457, 543, 697
BstDEI CTNAG 1 cut(s) 677
BstF5I GGATG 6 cut(s) 20, 132, 367, 535, 941, 985
BstKTI GATC 4 cut(s) 358, 481, 852, 1081
BstMAI GTCTC 4 cut(s) 233, 269, 299, 918
BstMBI GATC 4 cut(s) 355, 478, 849, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 371, 653, 800
BstNSI RCATGY 3 cut(s) 415, 507, 545
BstV1I GCAGC 2 cut(s) 269, 352
BstX2I RGATCY 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 1078
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 6 cut(s) 20, 132, 367, 535, 941, 985
BtsIMutI CAGTG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 1032
Cac8I GCNNGC 3 cut(s) 457, 543, 697
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 9 cut(s) 294, 412, 423, 504, 542, 546, 578, 648, 1032
CviJI RGCY 8 cut(s) 116, 194, 335, 374, 380, 699, 857, 878
CviKI_1 RGCY 8 cut(s) 116, 194, 335, 374, 380, 699, 857, 878
DdeI CTNAG 1 cut(s) 677
DpnI GATC 4 cut(s) 357, 480, 851, 1080
DpnII GATC 4 cut(s) 355, 478, 849, 1078
DraI TTTAAA 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 587
EcoRI GAATTC 1 cut(s) 890
EcoT14I CCWWGG 1 cut(s) 587
EcoT22I ATGCAT 2 cut(s) 547, 666
ErhI CCWWGG 1 cut(s) 587
FaeI CATG 9 cut(s) 297, 415, 426, 507, 545, 549, 581, 651, 1035
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 9 cut(s) 293, 411, 422, 503, 541, 545, 577, 647, 1031
FauNDI CATATG 2 cut(s) 634, 709
FbaI TGATCA 3 cut(s) 355, 478, 849
Fnu4HI GCNGC 2 cut(s) 258, 366
FokI GGATG 6 cut(s) 27, 139, 374, 542, 948, 972
Fsp4HI GCNGC 2 cut(s) 258, 366
FspBI CTAG 2 cut(s) 696, 822
GluI GCNGC 2 cut(s) 258, 366
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 9 cut(s) 297, 415, 426, 507, 545, 549, 581, 651, 1035
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 1 cut(s) 284
HphI GGTGA 5 cut(s) 164, 485, 859, 962, 1021
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 2 cut(s) 283, 721
Hpy188III TCNNGA 4 cut(s) 236, 359, 917, 944
Hpy8I GTNNAC 1 cut(s) 1064
HpyAV CCTTC 1 cut(s) 1052
HpyCH4III ACNGT 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 653, 800
HpyF3I CTNAG 1 cut(s) 677
Hsp92II CATG 9 cut(s) 297, 415, 426, 507, 545, 549, 581, 651, 1035
Ksp22I TGATCA 3 cut(s) 355, 478, 849
Kzo9I GATC 4 cut(s) 355, 478, 849, 1078
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 7 cut(s) 199, 344, 467, 551, 642, 843, 1027
Lsp1109I GCAGC 2 cut(s) 269, 352
LweI GCATC 3 cut(s) 5, 352, 384
MaeI CTAG 2 cut(s) 696, 822
MaeIII GTNAC 1 cut(s) 816
MalI GATC 4 cut(s) 357, 480, 851, 1080
MboI GATC 4 cut(s) 355, 478, 849, 1078
MboII GAAGA 5 cut(s) 523, 533, 536, 563, 1024
MfeI CAATTG 2 cut(s) 77, 640
MflI RGATCY 1 cut(s) 1078
MluCI AATT 5 cut(s) 77, 640, 890, 897, 925
MmeI TCCRAC 2 cut(s) 351, 913
MnlI CCTC 4 cut(s) 67, 310, 520, 784
Mph1103I ATGCAT 2 cut(s) 547, 666
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 6 cut(s) 225, 447, 468, 611, 966, 978
MslI CAYNNNNRTG 1 cut(s) 234
MunI CAATTG 2 cut(s) 77, 640
Mva1269I GAATGC 1 cut(s) 666
MwoI GCNNNNNNNGC 3 cut(s) 371, 653, 800
NdeI CATATG 2 cut(s) 634, 709
NdeII GATC 4 cut(s) 355, 478, 849, 1078
NheI GCTAGC 1 cut(s) 695
NlaIII CATG 9 cut(s) 297, 415, 426, 507, 545, 549, 581, 651, 1035
NlaIV GGNNCC 1 cut(s) 336
NsiI ATGCAT 2 cut(s) 547, 666
NspI RCATGY 3 cut(s) 415, 507, 545
PaeI GCATGC 1 cut(s) 545
PciI ACATGT 1 cut(s) 503
PctI GAATGC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 259, 367
PscI ACATGT 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 1078
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 6 cut(s) 225, 447, 468, 611, 966, 978
SatI GCNGC 2 cut(s) 258, 366
Sau3AI GATC 4 cut(s) 355, 478, 849, 1078
Sau96I GGNCC 1 cut(s) 114
SetI ASST 6 cut(s) 382, 486, 823, 880, 1046, 1063
SfaNI GCATC 3 cut(s) 5, 352, 384
SmiMI CAYNNNNRTG 1 cut(s) 234
SphI GCATGC 1 cut(s) 545
Sse9I AATT 5 cut(s) 77, 640, 890, 897, 925
SspMI CTAG 2 cut(s) 696, 822
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 753
TasI AATT 5 cut(s) 77, 640, 890, 897, 925
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 6 cut(s) 225, 447, 468, 611, 966, 978
Tru9I TTAA 6 cut(s) 225, 447, 468, 611, 966, 978
TscAI CASTG 1 cut(s) 193
TseI GCWGC 2 cut(s) 257, 365
TspDTI ATGAA 5 cut(s) 105, 449, 524, 534, 903
TspRI CASTG 1 cut(s) 193
XapI RAATTY 2 cut(s) 890, 897
XceI RCATGY 3 cut(s) 415, 507, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 696, 822
Zsp2I ATGCAT 2 cut(s) 547, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.