Rw3G027930

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000414
Physical Location & Seq
Reverse (-)
40662621 .. 40663644
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027930.1

Sequence Viewer

Length: 819 bp
ATGCAGTTGGGTAGTGATGAGCAAATAACTAATATTTTTTGGGCTGATGCTAGGATGATACTTGATTATTGTTTATTTGGTGATGTTGTGAGTTTTGACACTACATGTAGAACTAATGAAGCCAATTGTCCATTTGGAGTATTTGTGAGATTTAATCATCATCATCATGAGATTGTAATCTTTGGGGCAGCATTGATGTATGATGAAACTTCTAATTCATCTATATGGTTATTTGTGACGTTTTTGGAGGCAAGGCTTCAAACAAGTAGTATATTCAAGGGTGAGGAACGGGTCACCACCTTTTTATCAAAATGTATGAATAACTACGGAGAGGAGGATGAGTTCCTAGTTGCATGGGAAGCAATGCTCAATGAATATAGTGTACATGAAAATCCTTGGTTAAGTAGTATATTTCAATTAAAGAAGAAATTGGCAAAACCATATGTCAAGTGGGCATATGAGAGTTTCAATGCTAGCCTAAAACCATATGTTAAGTTAGACTATGATATGGTTCAGTTTTTCAAGCACTTTGATAGATTGCTCAACAATAAGCGGTATAAAGAGTTAGAGGCAGCTGGAAATATTTACACTAAAGCTATATTTGAAGAATTTCAGATTCAGTATGAGAAGTCTCTTGATTACCATTTAGTTGGATGTATTCAAGATAGAGATGACATTGTGTATAAAGTTGCCTTTAATGGTCATCCAAAGGAGAGATATGTTAGGGTGAAGAAAGACCGTACAGTATCTTGTAGTTGCAAGTTGTTTGAGATTGAAGGTATTTTGTGCGGCCATGCAATAAAAATTCTTATTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

272

Amino Acids

31.94

Weight (kDa)

5.87

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 29 - 83 8.5e-06 MULE transposase domain
SWIM PF04434 247 - 271 9.7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 553, 789
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 2 cut(s) 608, 804
AfaI GTAC 2 cut(s) 384, 742
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 8 cut(s) 260, 277, 416, 469, 523, 605, 662, 776
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 575, 596
AluI AGCT 2 cut(s) 575, 596
Alw26I GTCTC 1 cut(s) 636
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 2 cut(s) 188, 572
ApoI RAATTY 2 cut(s) 608, 804
Asp700I GAANNNNTTC 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 92, 286, 293, 739
AsuNHI GCTAGC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 200, 584
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 4 cut(s) 51, 347, 474, 817
BisI GCNGC 3 cut(s) 189, 573, 790
BlsI GCNGC 3 cut(s) 190, 574, 791
BmsI GCATC 1 cut(s) 37
BmtI GCTAGC 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 395
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 326, 356
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 4 cut(s) 60, 343, 659, 703
BseJI GATNNNNATC 1 cut(s) 176
BseMI GCAATG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 200, 584
BshFI GGCC 1 cut(s) 792
BsmAI GTCTC 1 cut(s) 636
BsnI GGCC 1 cut(s) 792
Bsp1407I TGTACA 1 cut(s) 382
BspACI CCGC 2 cut(s) 553, 789
BspANI GGCC 1 cut(s) 792
BspHI TCATGA 1 cut(s) 166
BspOI GCTAGC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 740, 745
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 475
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 4 cut(s) 60, 343, 659, 703
BstMAI GTCTC 1 cut(s) 636
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 200, 584
BstXI CCANNNNNNTGG 1 cut(s) 650
BsuRI GGCC 1 cut(s) 792
BtsCI GGATG 4 cut(s) 60, 343, 659, 703
Cac8I GCNNGC 1 cut(s) 475
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 2 cut(s) 383, 741
CviAII CATG 5 cut(s) 105, 167, 354, 386, 794
CviJI RGCY 7 cut(s) 44, 122, 256, 477, 575, 596, 792
CviKI_1 RGCY 7 cut(s) 44, 122, 256, 477, 575, 596, 792
CviQI GTAC 2 cut(s) 383, 741
EaeI YGGCCR 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 395
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 5 cut(s) 108, 170, 357, 389, 797
FatI CATG 5 cut(s) 104, 166, 353, 385, 793
FauNDI CATATG 3 cut(s) 442, 457, 487
Fnu4HI GCNGC 3 cut(s) 189, 573, 790
FokI GGATG 4 cut(s) 67, 350, 666, 690
Fsp4HI GCNGC 3 cut(s) 189, 573, 790
FspBI CTAG 4 cut(s) 51, 347, 474, 817
GluI GCNGC 3 cut(s) 189, 573, 790
HaeIII GGCC 1 cut(s) 792
Hin1II CATG 5 cut(s) 108, 170, 357, 389, 797
HinfI GANTC 1 cut(s) 616
HphI GGTGA 4 cut(s) 92, 286, 293, 739
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 3 cut(s) 167, 635, 662
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 770
HpyCH4III ACNGT 2 cut(s) 740, 745
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 4, 353, 759, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 5 cut(s) 108, 170, 357, 389, 797
LpnPI CCDG 1 cut(s) 561
Lsp1109I GCAGC 2 cut(s) 200, 584
LweI GCATC 1 cut(s) 37
MaeI CTAG 4 cut(s) 51, 347, 474, 817
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 235, 292
MboII GAAGA 3 cut(s) 436, 617, 742
MfeI CAATTG 1 cut(s) 124
MluCI AATT 6 cut(s) 124, 214, 416, 428, 608, 804
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 5 cut(s) 241, 277, 325, 328, 562
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 6 cut(s) 153, 401, 419, 492, 696, 813
MslI CAYNNNNRTG 2 cut(s) 165, 223
MspA1I CMGCKG 1 cut(s) 575
MunI CAATTG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 3 cut(s) 442, 457, 487
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 5 cut(s) 108, 170, 357, 389, 797
NmuCI GTSAC 2 cut(s) 235, 292
NspI RCATGY 1 cut(s) 108
PagI TCATGA 1 cut(s) 166
PciI ACATGT 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 616
PkrI GCNGC 3 cut(s) 190, 574, 791
PscI ACATGT 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 384, 742
RsaNI GTAC 2 cut(s) 383, 741
RseI CAYNNNNRTG 2 cut(s) 165, 223
SaqAI TTAA 6 cut(s) 153, 401, 419, 492, 696, 813
SatI GCNGC 3 cut(s) 189, 573, 790
SetI ASST 5 cut(s) 242, 302, 577, 598, 781
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 165, 223
Sse9I AATT 6 cut(s) 124, 214, 416, 428, 608, 804
SsiI CCGC 2 cut(s) 553, 789
SspI AATATT 2 cut(s) 34, 583
SspMI CTAG 4 cut(s) 51, 347, 474, 817
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 740, 745
TaiI ACGT 1 cut(s) 242
TasI AATT 6 cut(s) 124, 214, 416, 428, 608, 804
TatI WGTACW 1 cut(s) 382
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 6 cut(s) 153, 401, 419, 492, 696, 813
Tru9I TTAA 6 cut(s) 153, 401, 419, 492, 696, 813
TseFI GTSAC 2 cut(s) 235, 292
TseI GCWGC 2 cut(s) 188, 572
Tsp45I GTSAC 2 cut(s) 235, 292
TspDTI ATGAA 6 cut(s) 132, 207, 219, 332, 387, 402
TspGWI ACGGA 1 cut(s) 342
XapI RAATTY 2 cut(s) 608, 804
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 51, 347, 474, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.