RLG00000024696

casein kinase II subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38311843 .. 38312354
512 bp
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UTR
Exon/CDS
Intron
RLM00000024696

Sequence Viewer

Length: 363 bp
ATGCTGGACAAGCACCTAGAGAAGTCCTCCCCATCCACATCTAGAGGTTTGGCCAATAGTAAAGACAAAGGGAGGCTCTCTGTGCCCTCCACTTCCGCCAGAAAGTCTCAGCCCGATCACAGTGCCGCCGCCGCCGACGCTGCCTCGCTCGCCAAGAACAAATGCTCCGATGGTGGGTCTCATTTTCGATGGTTTTATGTTTTGAATTGTTGGCTGTACAAAGAGAGGCTTTCTGTGCCCTCCACTTCCGCCAGAAAGTATCAGCTCGATCACCGAGTCGCCGCCGCCTCGCTCGCCAAGAACAAATGCTCCAATGGTAGAGTGGATTTGGAGGATTTTAGTGTCATGGGTTTTGTTTCTTAG

Protein Analysis

121

Amino Acids

13.09

Weight (kDa)

9.67

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 96, 126, 129, 132, 249, 282, 285
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 205
AloI GAACNNNNNNTCC 4 cut(s) 149, 181, 293, 325
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 111, 183
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 263
BaeGI GKGCMC 2 cut(s) 87, 240
BalI TGGCCA 1 cut(s) 53
BbvI GCAGC 1 cut(s) 127
BccI CCATC 3 cut(s) 40, 164, 183
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcoDI GTCTC 2 cut(s) 111, 183
BfaI CTAG 2 cut(s) 17, 42
BisI GCNGC 6 cut(s) 126, 129, 132, 141, 282, 285
BlsI GCNGC 6 cut(s) 127, 130, 133, 142, 283, 286
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaI GGTCTC 1 cut(s) 183
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 122
BseSI GKGCMC 2 cut(s) 87, 240
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 111, 183
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 87, 240
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 2 cut(s) 115, 268
BspACI CCGC 7 cut(s) 96, 126, 129, 132, 249, 282, 285
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 216
BssMI GATC 2 cut(s) 115, 268
Bst4CI ACNGT 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 150, 294
BstDEI CTNAG 2 cut(s) 108, 360
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 2 cut(s) 118, 271
BstMAI GTCTC 2 cut(s) 111, 183
BstMBI GATC 2 cut(s) 115, 268
BstMWI GCNNNNNNNGC 8 cut(s) 10, 82, 131, 137, 140, 149, 235, 293
BstSLI GKGCMC 2 cut(s) 87, 240
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 150, 294
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 346
CviJI RGCY 6 cut(s) 53, 76, 112, 214, 229, 265
CviKI_1 RGCY 6 cut(s) 53, 76, 112, 214, 229, 265
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 108, 360
DpnI GATC 2 cut(s) 117, 270
DpnII GATC 2 cut(s) 115, 268
EaeI YGGCCR 1 cut(s) 51
EciI GGCGGA 2 cut(s) 85, 238
Eco31I GGTCTC 1 cut(s) 183
FaeI CATG 1 cut(s) 349
FaiI YATR 2 cut(s) 198, 347
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 6 cut(s) 126, 129, 132, 141, 282, 285
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 6 cut(s) 126, 129, 132, 141, 282, 285
FspBI CTAG 2 cut(s) 17, 42
GluI GCNGC 6 cut(s) 126, 129, 132, 141, 282, 285
HaeIII GGCC 1 cut(s) 53
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 349
HinfI GANTC 1 cut(s) 276
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 82, 131, 137, 140, 149, 235, 293
HpyF3I CTNAG 2 cut(s) 108, 360
Hsp92II CATG 1 cut(s) 349
Kzo9I GATC 2 cut(s) 115, 268
LmnI GCTCC 2 cut(s) 170, 314
LpnPI CCDG 2 cut(s) 112, 265
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 2 cut(s) 17, 42
MalI GATC 2 cut(s) 117, 270
MboI GATC 2 cut(s) 115, 268
MhlI GDGCHC 2 cut(s) 87, 240
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 205
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 9 cut(s) 37, 38, 66, 97, 154, 219, 250, 298, 325
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MwoI GCNNNNNNNGC 8 cut(s) 10, 82, 131, 137, 140, 149, 235, 293
NdeII GATC 2 cut(s) 115, 268
NlaIII CATG 1 cut(s) 349
PkrI GCNGC 6 cut(s) 127, 130, 133, 142, 283, 286
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 6 cut(s) 126, 129, 132, 141, 282, 285
Sau3AI GATC 2 cut(s) 115, 268
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 2 cut(s) 87, 240
SetI ASST 3 cut(s) 18, 49, 267
Sse9I AATT 1 cut(s) 205
SsiI CCGC 7 cut(s) 96, 126, 129, 132, 249, 282, 285
SspMI CTAG 2 cut(s) 17, 42
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 187, 267
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 216
TauI GCSGC 5 cut(s) 128, 131, 134, 284, 287
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 140
TspRI CASTG 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 2 cut(s) 17, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.