Rmu_sc0000221.1_g000019

FAR1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000221.1
OG0000414
Physical Location & Seq
Reverse (-)
102145 .. 102963
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000221.1_g000019.1.cds

Sequence Viewer

Length: 819 bp
atggttgctgataaaaggtacaaggagttacaagcagaatatgatatgtgcttcaggttgcctattctgaaaatgcatgtcaaaatgctatatgaagcaagaaaagtttacactaaactaatatttgaagagtttcaagatcaatttgaatcgtctcttgaagcttctataacagattgtgttgatgttgatggtggaaagatatatactgtgattagagatggctactctagagaacggcaagtgaagagagatagtgatgatatactctcttgtagttgcagattatttgagatgaaaggggttgtatgtaggcacattatcaaggtccttagcgaagtgatgcaaatcaaagaaattcctgagcattatatcttaaaaagatggacaaaaaaggctcgagctgaaagtgttcaagacatgcatgagcgtgaaattcaaccagaccctaagttgcaacaagcctcttggtacagatctttatgttccacctacattagaatatcaagcagggcttctgaaaatgaaaaagcatacaaattagtcatgacaaatgcagagaagttagcaaaagaagttgaagaattgctacgatctgaaatgaatgctaatgtggatgagaatggtcatacaactcaatccactcctggacaactcaatgtagatggtaatgtggtgaatgcaaaaggtctaaagaaaaaggaaacatctaaaggaagaaaacatagaatcaagagtcaagtagagataagcatgaacaaaaataaaaaacagaggcaacccagtaaaaaagcaatggagggattcttatttctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

272

Amino Acids

31.73

Weight (kDa)

9.18

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 357, 435
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 2 cut(s) 20, 473
AgsI TTSAA 7 cut(s) 128, 137, 149, 161, 416, 440, 581
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 2 cut(s) 164, 404
AluI AGCT 2 cut(s) 164, 404
Alw26I GTCTC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 399
ApoI RAATTY 2 cut(s) 357, 435
Asp700I GAANNNNTTC 2 cut(s) 132, 411
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 688
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BccI CCATC 4 cut(s) 185, 215, 378, 659
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 648
BmrI ACTGGG 1 cut(s) 777
BmsI GCATC 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 777
Bpu10I CCTNAGC 2 cut(s) 332, 363
BsaBI GATNNNNATC 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 801
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 1 cut(s) 648
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 347
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmI GAATGC 2 cut(s) 610, 685
BsoBI CYCGRG 1 cut(s) 399
Bsp143I GATC 3 cut(s) 139, 476, 593
BspCNI CTCAG 1 cut(s) 355
BspHI TCATGA 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 1 cut(s) 783
BssMI GATC 3 cut(s) 139, 476, 593
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 123, 242
BstDEI CTNAG 3 cut(s) 332, 363, 450
BstF5I GGATG 1 cut(s) 622
BstKTI GATC 3 cut(s) 142, 479, 596
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 139, 476, 593
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 2 cut(s) 80, 424
BstSCI CCNGG 1 cut(s) 646
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtsCI GGATG 1 cut(s) 622
CciI TCATGA 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 19, 472
CviAII CATG 5 cut(s) 77, 421, 425, 547, 754
CviJI RGCY 6 cut(s) 164, 225, 398, 404, 464, 515
CviKI_1 RGCY 6 cut(s) 164, 225, 398, 404, 464, 515
CviQI GTAC 2 cut(s) 19, 472
DdeI CTNAG 3 cut(s) 332, 363, 450
DpnI GATC 3 cut(s) 141, 478, 595
DpnII GATC 3 cut(s) 139, 476, 593
Eam1104I CTCTTC 2 cut(s) 123, 242
EarI CTCTTC 2 cut(s) 123, 242
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 646
EcoT22I ATGCAT 2 cut(s) 78, 426
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 5 cut(s) 80, 424, 428, 550, 757
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FatI CATG 5 cut(s) 76, 420, 424, 546, 753
FokI GGATG 1 cut(s) 629
FspBI CTAG 1 cut(s) 231
Hin1II CATG 5 cut(s) 80, 424, 428, 550, 757
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 149, 729, 736, 804
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 69, 520, 598
Hpy188III TCNNGA 7 cut(s) 137, 158, 231, 362, 416, 547, 733
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 7 cut(s) 76, 282, 346, 424, 457, 557, 683
HpyF3I CTNAG 3 cut(s) 332, 363, 450
Hsp92II CATG 5 cut(s) 80, 424, 428, 550, 757
Kzo9I GATC 3 cut(s) 139, 476, 593
LpnPI CCDG 7 cut(s) 40, 375, 456, 496, 633, 660, 796
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 27
MalI GATC 3 cut(s) 141, 478, 595
MboI GATC 3 cut(s) 139, 476, 593
MboII GAAGA 4 cut(s) 140, 259, 593, 729
MflI RGATCY 1 cut(s) 476
MluCI AATT 5 cut(s) 143, 357, 435, 539, 584
MlyI GAGTC 1 cut(s) 745
MnlI CCTC 3 cut(s) 475, 768, 793
Mph1103I ATGCAT 2 cut(s) 78, 426
MroXI GAANNNNTTC 2 cut(s) 132, 411
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 648
Mva1269I GAATGC 2 cut(s) 610, 685
MvaI CCWGG 1 cut(s) 648
NdeII GATC 3 cut(s) 139, 476, 593
NlaIII CATG 5 cut(s) 80, 424, 428, 550, 757
NsiI ATGCAT 2 cut(s) 78, 426
NspI RCATGY 2 cut(s) 80, 424
PaeR7I CTCGAG 1 cut(s) 399
PagI TCATGA 1 cut(s) 546
PctI GAATGC 2 cut(s) 610, 685
PdmI GAANNNNTTC 2 cut(s) 132, 411
PfeI GAWTC 3 cut(s) 149, 729, 804
PfoI TCCNGGA 1 cut(s) 646
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 399
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 2 cut(s) 20, 473
RsaNI GTAC 2 cut(s) 19, 472
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 377
Sau3AI GATC 3 cut(s) 139, 476, 593
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 745
ScrFI CCNGG 1 cut(s) 648
SetI ASST 7 cut(s) 20, 59, 166, 330, 406, 494, 691
SfaNI GCATC 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 5 cut(s) 143, 357, 435, 539, 584
SspI AATATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 646
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 400
TasI AATT 5 cut(s) 143, 357, 435, 539, 584
TfiI GAWTC 3 cut(s) 149, 729, 804
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TspDTI ATGAA 5 cut(s) 108, 311, 540, 617, 770
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 2 cut(s) 357, 435
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 2 cut(s) 80, 424
XhoI CTCGAG 1 cut(s) 399
XmnI GAANNNNTTC 2 cut(s) 132, 411
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 2 cut(s) 78, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.